HEADER OXIDOREDUCTASE 06-APR-12 4EJ6 TITLE CRYSTAL STRUCTURE OF A PUTATIVE ZINC-BINDING DEHYDROGENASE (TARGET TITLE 2 PSI-012003) FROM SINORHIZOBIUM MELILOTI 1021 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ZINC-BINDING DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SINORHIZOBIUM MELILOTI; SOURCE 3 ORGANISM_COMMON: ENSIFER MELILOTI; SOURCE 4 ORGANISM_TAXID: 266834; SOURCE 5 STRAIN: 1021; SOURCE 6 GENE: R01577, SMC01214; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PSGC KEYWDS STRUCTURAL GENOMICS, NYSGRC, PSI-BIOLOGY, NEW YORK STRUCTURAL KEYWDS 2 GENOMICS RESEARCH CONSORTIUM, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.SAMPATHKUMAR,S.C.ALMO,NEW YORK STRUCTURAL GENOMICS RESEARCH AUTHOR 2 CONSORTIUM (NYSGRC) REVDAT 3 20-NOV-24 4EJ6 1 REMARK SEQADV LINK REVDAT 2 15-NOV-17 4EJ6 1 REMARK REVDAT 1 02-MAY-12 4EJ6 0 JRNL AUTH P.SAMPATHKUMAR,N.BANU,R.BHOSLE,J.BONANNO,S.CHAMALA, JRNL AUTH 2 S.CHOWDHURY,A.FISER,A.GIZZI,A.S.GLENN,J.HAMMONDS, JRNL AUTH 3 B.HILLERICH,K.KHAFIZOV,J.D.LOVE,B.MATIKAINEN,Y.PATSKOVSKY, JRNL AUTH 4 R.SEIDEL,R.TORO,W.ZENCHECK,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE ZINC-BINDING DEHYDROGENASE JRNL TITL 2 FROM SINORHIZOBIUM MELILOTI 1021 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 32166 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1627 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2019 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2492 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 185 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.24000 REMARK 3 B22 (A**2) : -1.24000 REMARK 3 B33 (A**2) : 2.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.129 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.118 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.727 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2636 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1846 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3561 ; 1.332 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4507 ; 0.890 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 358 ; 6.171 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ;34.194 ;23.021 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 417 ;11.034 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;22.218 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 427 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2926 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 491 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4EJ6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000071684. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32173 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 23.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08300 REMARK 200 FOR THE DATA SET : 33.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 20.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.80000 REMARK 200 FOR SHELL : 5.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX C, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (20 MM HEPES, PH 7.5, 150 MM REMARK 280 NACL, 10% GLYCEROL; RESERVOIR (MCSG1 #3: 0.2 M SODIUM CHLORIDE REMARK 280 0.1 M NA2HPO4:KH2PO4 10% (W/V) PEG 8000 ); CRYOPROTECTION (30% REMARK 280 ETHYLENE GLYCOL), TEMPERATURE 298K, VAPOR DIFFUSION, SITTING REMARK 280 DROP, PH 6.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 53.80350 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 53.80350 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 68.58000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 53.80350 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 53.80350 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 68.58000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 53.80350 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 53.80350 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 68.58000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 53.80350 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 53.80350 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 68.58000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 53.80350 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 53.80350 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 68.58000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 53.80350 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 53.80350 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 68.58000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 53.80350 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 53.80350 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 68.58000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 53.80350 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 53.80350 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 68.58000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 577 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 SER A -15 REMARK 465 SER A -14 REMARK 465 GLY A -13 REMARK 465 VAL A -12 REMARK 465 ASP A -11 REMARK 465 LEU A -10 REMARK 465 GLY A -9 REMARK 465 THR A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 ALA A 341 REMARK 465 GLU A 342 REMARK 465 ARG A 343 REMARK 465 VAL A 344 REMARK 465 ALA A 345 REMARK 465 GLN A 346 REMARK 465 GLN A 347 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 72 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 110 -60.72 -132.27 REMARK 500 GLU A 280 57.81 38.63 REMARK 500 ILE A 288 -139.04 40.32 REMARK 500 VAL A 333 -76.49 -112.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 418 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 88 SG REMARK 620 2 CYS A 91 SG 107.2 REMARK 620 3 CYS A 94 SG 120.6 105.0 REMARK 620 4 CYS A 102 SG 102.9 120.4 101.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 418 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 419 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-012003 RELATED DB: TARGETTRACK DBREF 4EJ6 A 1 347 UNP Q92PZ3 Q92PZ3_RHIME 1 347 SEQADV 4EJ6 MSE A -22 UNP Q92PZ3 EXPRESSION TAG SEQADV 4EJ6 HIS A -21 UNP Q92PZ3 EXPRESSION TAG SEQADV 4EJ6 HIS A -20 UNP Q92PZ3 EXPRESSION TAG SEQADV 4EJ6 HIS A -19 UNP Q92PZ3 EXPRESSION TAG SEQADV 4EJ6 HIS A -18 UNP Q92PZ3 EXPRESSION TAG SEQADV 4EJ6 HIS A -17 UNP Q92PZ3 EXPRESSION TAG SEQADV 4EJ6 HIS A -16 UNP Q92PZ3 EXPRESSION TAG SEQADV 4EJ6 SER A -15 UNP Q92PZ3 EXPRESSION TAG SEQADV 4EJ6 SER A -14 UNP Q92PZ3 EXPRESSION TAG SEQADV 4EJ6 GLY A -13 UNP Q92PZ3 EXPRESSION TAG SEQADV 4EJ6 VAL A -12 UNP Q92PZ3 EXPRESSION TAG SEQADV 4EJ6 ASP A -11 UNP Q92PZ3 EXPRESSION TAG SEQADV 4EJ6 LEU A -10 UNP Q92PZ3 EXPRESSION TAG SEQADV 4EJ6 GLY A -9 UNP Q92PZ3 EXPRESSION TAG SEQADV 4EJ6 THR A -8 UNP Q92PZ3 EXPRESSION TAG SEQADV 4EJ6 GLU A -7 UNP Q92PZ3 EXPRESSION TAG SEQADV 4EJ6 ASN A -6 UNP Q92PZ3 EXPRESSION TAG SEQADV 4EJ6 LEU A -5 UNP Q92PZ3 EXPRESSION TAG SEQADV 4EJ6 TYR A -4 UNP Q92PZ3 EXPRESSION TAG SEQADV 4EJ6 PHE A -3 UNP Q92PZ3 EXPRESSION TAG SEQADV 4EJ6 GLN A -2 UNP Q92PZ3 EXPRESSION TAG SEQADV 4EJ6 SER A -1 UNP Q92PZ3 EXPRESSION TAG SEQADV 4EJ6 MSE A 0 UNP Q92PZ3 EXPRESSION TAG SEQRES 1 A 370 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 370 GLY THR GLU ASN LEU TYR PHE GLN SER MSE MSE LYS ALA SEQRES 3 A 370 VAL ARG LEU GLU SER VAL GLY ASN ILE SER VAL ARG ASN SEQRES 4 A 370 VAL GLY ILE PRO GLU PRO GLY PRO ASP ASP LEU LEU VAL SEQRES 5 A 370 LYS VAL GLU ALA CYS GLY ILE CYS GLY THR ASP ARG HIS SEQRES 6 A 370 LEU LEU HIS GLY GLU PHE PRO SER THR PRO PRO VAL THR SEQRES 7 A 370 LEU GLY HIS GLU PHE CYS GLY ILE VAL VAL GLU ALA GLY SEQRES 8 A 370 SER ALA VAL ARG ASP ILE ALA PRO GLY ALA ARG ILE THR SEQRES 9 A 370 GLY ASP PRO ASN ILE SER CYS GLY ARG CYS PRO GLN CYS SEQRES 10 A 370 GLN ALA GLY ARG VAL ASN LEU CYS ARG ASN LEU ARG ALA SEQRES 11 A 370 ILE GLY ILE HIS ARG ASP GLY GLY PHE ALA GLU TYR VAL SEQRES 12 A 370 LEU VAL PRO ARG LYS GLN ALA PHE GLU ILE PRO LEU THR SEQRES 13 A 370 LEU ASP PRO VAL HIS GLY ALA PHE CYS GLU PRO LEU ALA SEQRES 14 A 370 CYS CYS LEU HIS GLY VAL ASP LEU SER GLY ILE LYS ALA SEQRES 15 A 370 GLY SER THR VAL ALA ILE LEU GLY GLY GLY VAL ILE GLY SEQRES 16 A 370 LEU LEU THR VAL GLN LEU ALA ARG LEU ALA GLY ALA THR SEQRES 17 A 370 THR VAL ILE LEU SER THR ARG GLN ALA THR LYS ARG ARG SEQRES 18 A 370 LEU ALA GLU GLU VAL GLY ALA THR ALA THR VAL ASP PRO SEQRES 19 A 370 SER ALA GLY ASP VAL VAL GLU ALA ILE ALA GLY PRO VAL SEQRES 20 A 370 GLY LEU VAL PRO GLY GLY VAL ASP VAL VAL ILE GLU CYS SEQRES 21 A 370 ALA GLY VAL ALA GLU THR VAL LYS GLN SER THR ARG LEU SEQRES 22 A 370 ALA LYS ALA GLY GLY THR VAL VAL ILE LEU GLY VAL LEU SEQRES 23 A 370 PRO GLN GLY GLU LYS VAL GLU ILE GLU PRO PHE ASP ILE SEQRES 24 A 370 LEU PHE ARG GLU LEU ARG VAL LEU GLY SER PHE ILE ASN SEQRES 25 A 370 PRO PHE VAL HIS ARG ARG ALA ALA ASP LEU VAL ALA THR SEQRES 26 A 370 GLY ALA ILE GLU ILE ASP ARG MSE ILE SER ARG ARG ILE SEQRES 27 A 370 SER LEU ASP GLU ALA PRO ASP VAL ILE SER ASN PRO ALA SEQRES 28 A 370 ALA ALA GLY GLU VAL LYS VAL LEU VAL ILE PRO SER ALA SEQRES 29 A 370 GLU ARG VAL ALA GLN GLN MODRES 4EJ6 MSE A 0 MET SELENOMETHIONINE MODRES 4EJ6 MSE A 1 MET SELENOMETHIONINE MODRES 4EJ6 MSE A 310 MET SELENOMETHIONINE HET MSE A 0 8 HET MSE A 1 8 HET MSE A 310 8 HET EDO A 401 4 HET EDO A 402 4 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET EDO A 407 4 HET EDO A 408 4 HET EDO A 409 4 HET EDO A 410 4 HET EDO A 411 4 HET EDO A 412 4 HET EDO A 413 4 HET EDO A 414 4 HET EDO A 415 4 HET EDO A 416 4 HET EDO A 417 4 HET ZN A 418 1 HET CL A 419 1 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 EDO 17(C2 H6 O2) FORMUL 19 ZN ZN 2+ FORMUL 20 CL CL 1- FORMUL 21 HOH *185(H2 O) HELIX 1 1 CYS A 37 HIS A 45 1 9 HELIX 2 2 CYS A 91 ALA A 96 1 6 HELIX 3 3 ARG A 98 CYS A 102 5 5 HELIX 4 4 VAL A 137 ALA A 140 5 4 HELIX 5 5 PHE A 141 GLY A 156 1 16 HELIX 6 6 GLY A 169 ALA A 182 1 14 HELIX 7 7 GLN A 193 VAL A 203 1 11 HELIX 8 8 ASP A 215 GLY A 222 1 8 HELIX 9 9 VAL A 240 LEU A 250 1 11 HELIX 10 10 GLU A 272 ARG A 279 1 8 HELIX 11 11 VAL A 292 THR A 302 1 11 HELIX 12 12 ILE A 307 ARG A 309 5 3 HELIX 13 13 SER A 316 ASP A 318 5 3 HELIX 14 14 GLU A 319 ASN A 326 1 8 SHEET 1 A 3 ASN A 11 GLY A 18 0 SHEET 2 A 3 MSE A 0 SER A 8 -1 N SER A 8 O ASN A 11 SHEET 3 A 3 VAL A 54 THR A 55 -1 O VAL A 54 N LEU A 6 SHEET 1 B 5 TYR A 119 PRO A 123 0 SHEET 2 B 5 ASP A 26 GLY A 35 -1 N VAL A 29 O VAL A 120 SHEET 3 B 5 PHE A 60 ALA A 67 -1 O ILE A 63 N LYS A 30 SHEET 4 B 5 ARG A 79 GLY A 82 -1 O ILE A 80 N GLY A 62 SHEET 5 B 5 ALA A 127 ILE A 130 -1 O PHE A 128 N THR A 81 SHEET 1 C 4 TYR A 119 PRO A 123 0 SHEET 2 C 4 ASP A 26 GLY A 35 -1 N VAL A 29 O VAL A 120 SHEET 3 C 4 LYS A 334 VAL A 337 -1 O VAL A 337 N CYS A 34 SHEET 4 C 4 ILE A 311 ILE A 315 1 N ILE A 315 O LEU A 336 SHEET 1 D 2 ASN A 85 ILE A 86 0 SHEET 2 D 2 ARG A 106 ALA A 107 -1 O ARG A 106 N ILE A 86 SHEET 1 E 6 ALA A 207 VAL A 209 0 SHEET 2 E 6 THR A 186 SER A 190 1 N LEU A 189 O VAL A 209 SHEET 3 E 6 THR A 162 LEU A 166 1 N ILE A 165 O ILE A 188 SHEET 4 E 6 VAL A 231 GLU A 236 1 O VAL A 233 N ALA A 164 SHEET 5 E 6 ALA A 251 ILE A 259 1 O VAL A 258 N VAL A 234 SHEET 6 E 6 ARG A 282 GLY A 285 1 O ARG A 282 N VAL A 257 LINK C SER A -1 N MSE A 0 1555 1555 1.33 LINK C MSE A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C ARG A 309 N MSE A 310 1555 1555 1.33 LINK C MSE A 310 N ILE A 311 1555 1555 1.33 LINK SG CYS A 88 ZN ZN A 418 1555 1555 2.33 LINK SG CYS A 91 ZN ZN A 418 1555 1555 2.32 LINK SG CYS A 94 ZN ZN A 418 1555 1555 2.34 LINK SG CYS A 102 ZN ZN A 418 1555 1555 2.37 CISPEP 1 PRO A 52 PRO A 53 0 0.27 SITE 1 AC1 7 ASP A 83 GLN A 95 LYS A 125 PHE A 128 SITE 2 AC1 7 HOH A 524 HOH A 552 HOH A 569 SITE 1 AC2 4 GLN A 265 GLU A 272 PHE A 274 ASP A 275 SITE 1 AC3 1 ARG A 197 SITE 1 AC4 4 PHE A 48 PRO A 264 GLN A 265 HOH A 655 SITE 1 AC5 1 GLU A 32 SITE 1 AC6 5 GLN A 177 ARG A 180 VAL A 203 GLY A 204 SITE 2 AC6 5 HOH A 634 SITE 1 AC7 4 GLY A 168 THR A 191 ARG A 192 GLN A 193 SITE 1 AC8 4 THR A 51 PRO A 53 HIS A 111 ASP A 113 SITE 1 AC9 5 GLY A 229 LYS A 252 ALA A 253 ARG A 279 SITE 2 AC9 5 HOH A 662 SITE 1 BC1 6 THR A 195 LEU A 199 GLU A 202 ASP A 308 SITE 2 BC1 6 HOH A 544 HOH A 584 SITE 1 BC2 5 ASP A 308 ARG A 309 ILE A 311 HOH A 544 SITE 2 BC2 5 HOH A 577 SITE 1 BC3 2 GLU A 218 EDO A 415 SITE 1 BC4 4 LEU A 101 PHE A 278 ARG A 279 HOH A 674 SITE 1 BC5 3 SER A 13 VAL A 14 ASP A 318 SITE 1 BC6 3 ARG A 249 EDO A 412 HOH A 542 SITE 1 BC7 4 PRO A 92 GLN A 93 LYS A 252 HOH A 676 SITE 1 BC8 5 GLU A 129 ILE A 130 PRO A 131 HOH A 608 SITE 2 BC8 5 HOH A 681 SITE 1 BC9 4 CYS A 88 CYS A 91 CYS A 94 CYS A 102 SITE 1 CC1 4 GLY A 167 GLY A 169 GLY A 172 CYS A 237 CRYST1 107.607 107.607 137.160 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009293 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009293 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007291 0.00000