data_4EK2 # _entry.id 4EK2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.393 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4EK2 pdb_00004ek2 10.2210/pdb4ek2/pdb RCSB RCSB071716 ? ? WWPDB D_1000071716 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-05-09 2 'Structure model' 1 1 2013-10-30 3 'Structure model' 1 2 2023-09-13 4 'Structure model' 2 0 2024-05-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' 6 4 'Structure model' 'Atomic model' 7 4 'Structure model' 'Data collection' 8 4 'Structure model' 'Derived calculations' 9 4 'Structure model' 'Non-polymer description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_ref_seq_dif 6 3 'Structure model' struct_site 7 4 'Structure model' atom_site 8 4 'Structure model' chem_comp 9 4 'Structure model' chem_comp_atom 10 4 'Structure model' chem_comp_bond 11 4 'Structure model' pdbx_entity_nonpoly 12 4 'Structure model' pdbx_nonpoly_scheme 13 4 'Structure model' struct_site 14 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' 7 4 'Structure model' '_atom_site.B_iso_or_equiv' 8 4 'Structure model' '_atom_site.Cartn_x' 9 4 'Structure model' '_atom_site.Cartn_y' 10 4 'Structure model' '_atom_site.Cartn_z' 11 4 'Structure model' '_atom_site.auth_atom_id' 12 4 'Structure model' '_atom_site.auth_comp_id' 13 4 'Structure model' '_atom_site.label_atom_id' 14 4 'Structure model' '_atom_site.label_comp_id' 15 4 'Structure model' '_atom_site.type_symbol' 16 4 'Structure model' '_chem_comp.id' 17 4 'Structure model' '_chem_comp.mon_nstd_flag' 18 4 'Structure model' '_chem_comp.type' 19 4 'Structure model' '_chem_comp_atom.atom_id' 20 4 'Structure model' '_chem_comp_atom.comp_id' 21 4 'Structure model' '_chem_comp_atom.pdbx_aromatic_flag' 22 4 'Structure model' '_chem_comp_atom.pdbx_stereo_config' 23 4 'Structure model' '_chem_comp_atom.type_symbol' 24 4 'Structure model' '_chem_comp_bond.atom_id_1' 25 4 'Structure model' '_chem_comp_bond.atom_id_2' 26 4 'Structure model' '_chem_comp_bond.comp_id' 27 4 'Structure model' '_chem_comp_bond.pdbx_aromatic_flag' 28 4 'Structure model' '_chem_comp_bond.value_order' 29 4 'Structure model' '_pdbx_entity_nonpoly.comp_id' 30 4 'Structure model' '_pdbx_nonpoly_scheme.mon_id' 31 4 'Structure model' '_pdbx_nonpoly_scheme.pdb_mon_id' 32 4 'Structure model' '_struct_site.details' 33 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 34 4 'Structure model' '_struct_site_gen.auth_comp_id' 35 4 'Structure model' '_struct_site_gen.label_comp_id' # _pdbx_database_status.entry_id 4EK2 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-04-09 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4DUT 'Same protein bound to deoxyadenosine monophosphate' unspecified TargetTrack SSGCID-ButhA.00438.a . unspecified # _audit_author.name 'Seattle Structural Genomics Center for Infectious Disease (SSGCID)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Combining functional and structural genomics to sample the essential Burkholderia structome.' _citation.journal_abbrev 'Plos One' _citation.journal_volume 8 _citation.page_first e53851 _citation.page_last e53851 _citation.year 2013 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1932-6203 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23382856 _citation.pdbx_database_id_DOI 10.1371/journal.pone.0053851 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Baugh, L.' 1 ? primary 'Gallagher, L.A.' 2 ? primary 'Patrapuvich, R.' 3 ? primary 'Clifton, M.C.' 4 ? primary 'Gardberg, A.S.' 5 ? primary 'Edwards, T.E.' 6 ? primary 'Armour, B.' 7 ? primary 'Begley, D.W.' 8 ? primary 'Dieterich, S.H.' 9 ? primary 'Dranow, D.M.' 10 ? primary 'Abendroth, J.' 11 ? primary 'Fairman, J.W.' 12 ? primary 'Fox, D.' 13 ? primary 'Staker, B.L.' 14 ? primary 'Phan, I.' 15 ? primary 'Gillespie, A.' 16 ? primary 'Choi, R.' 17 ? primary 'Nakazawa-Hewitt, S.' 18 ? primary 'Nguyen, M.T.' 19 ? primary 'Napuli, A.' 20 ? primary 'Barrett, L.' 21 ? primary 'Buchko, G.W.' 22 ? primary 'Stacy, R.' 23 ? primary 'Myler, P.J.' 24 ? primary 'Stewart, L.J.' 25 ? primary 'Manoil, C.' 26 ? primary 'Van Voorhis, W.C.' 27 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Nucleoside diphosphate kinase' 15937.228 2 2.7.4.6 ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 3 non-polymer syn 'DIMETHYL SULFOXIDE' 78.133 2 ? ? ? ? 4 non-polymer syn "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" 331.222 1 ? ? ? ? 5 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 6 water nat water 18.015 275 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'NDK, NDP kinase, Nucleoside-2-P kinase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPGSMALERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKDLVEFMISGPVMIQV LEGEDAILKNRDLMGATDPKKAEKGTIRADFADSIDANAVHGSDAPETARVEIAFFFPEMNVYSR ; _entity_poly.pdbx_seq_one_letter_code_can ;GPGSMALERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKDLVEFMISGPVMIQV LEGEDAILKNRDLMGATDPKKAEKGTIRADFADSIDANAVHGSDAPETARVEIAFFFPEMNVYSR ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier SSGCID-ButhA.00438.a # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 'DIMETHYL SULFOXIDE' DMS 4 "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" D5M 5 1,2-ETHANEDIOL EDO 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 GLY n 1 4 SER n 1 5 MET n 1 6 ALA n 1 7 LEU n 1 8 GLU n 1 9 ARG n 1 10 THR n 1 11 LEU n 1 12 SER n 1 13 ILE n 1 14 ILE n 1 15 LYS n 1 16 PRO n 1 17 ASP n 1 18 ALA n 1 19 VAL n 1 20 ALA n 1 21 LYS n 1 22 ASN n 1 23 VAL n 1 24 ILE n 1 25 GLY n 1 26 GLN n 1 27 ILE n 1 28 TYR n 1 29 SER n 1 30 ARG n 1 31 PHE n 1 32 GLU n 1 33 ASN n 1 34 ALA n 1 35 GLY n 1 36 LEU n 1 37 LYS n 1 38 ILE n 1 39 VAL n 1 40 ALA n 1 41 ALA n 1 42 ARG n 1 43 MET n 1 44 ALA n 1 45 HIS n 1 46 LEU n 1 47 SER n 1 48 ARG n 1 49 ALA n 1 50 ASP n 1 51 ALA n 1 52 GLU n 1 53 LYS n 1 54 PHE n 1 55 TYR n 1 56 ALA n 1 57 VAL n 1 58 HIS n 1 59 ALA n 1 60 GLU n 1 61 ARG n 1 62 PRO n 1 63 PHE n 1 64 PHE n 1 65 LYS n 1 66 ASP n 1 67 LEU n 1 68 VAL n 1 69 GLU n 1 70 PHE n 1 71 MET n 1 72 ILE n 1 73 SER n 1 74 GLY n 1 75 PRO n 1 76 VAL n 1 77 MET n 1 78 ILE n 1 79 GLN n 1 80 VAL n 1 81 LEU n 1 82 GLU n 1 83 GLY n 1 84 GLU n 1 85 ASP n 1 86 ALA n 1 87 ILE n 1 88 LEU n 1 89 LYS n 1 90 ASN n 1 91 ARG n 1 92 ASP n 1 93 LEU n 1 94 MET n 1 95 GLY n 1 96 ALA n 1 97 THR n 1 98 ASP n 1 99 PRO n 1 100 LYS n 1 101 LYS n 1 102 ALA n 1 103 GLU n 1 104 LYS n 1 105 GLY n 1 106 THR n 1 107 ILE n 1 108 ARG n 1 109 ALA n 1 110 ASP n 1 111 PHE n 1 112 ALA n 1 113 ASP n 1 114 SER n 1 115 ILE n 1 116 ASP n 1 117 ALA n 1 118 ASN n 1 119 ALA n 1 120 VAL n 1 121 HIS n 1 122 GLY n 1 123 SER n 1 124 ASP n 1 125 ALA n 1 126 PRO n 1 127 GLU n 1 128 THR n 1 129 ALA n 1 130 ARG n 1 131 VAL n 1 132 GLU n 1 133 ILE n 1 134 ALA n 1 135 PHE n 1 136 PHE n 1 137 PHE n 1 138 PRO n 1 139 GLU n 1 140 MET n 1 141 ASN n 1 142 VAL n 1 143 TYR n 1 144 SER n 1 145 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ndk, BTH_I2231' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'E264 / ATCC 700388 / DSM 13276 / CIP 106301' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Burkholderia thailandensis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 271848 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 D5M non-polymer . "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DMS non-polymer . 'DIMETHYL SULFOXIDE' ? 'C2 H6 O S' 78.133 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 ? ? ? A . n A 1 2 PRO 2 -2 ? ? ? A . n A 1 3 GLY 3 -1 ? ? ? A . n A 1 4 SER 4 0 0 SER SER A . n A 1 5 MET 5 1 1 MET MET A . n A 1 6 ALA 6 2 2 ALA ALA A . n A 1 7 LEU 7 3 3 LEU LEU A . n A 1 8 GLU 8 4 4 GLU GLU A . n A 1 9 ARG 9 5 5 ARG ARG A . n A 1 10 THR 10 6 6 THR THR A . n A 1 11 LEU 11 7 7 LEU LEU A . n A 1 12 SER 12 8 8 SER SER A . n A 1 13 ILE 13 9 9 ILE ILE A . n A 1 14 ILE 14 10 10 ILE ILE A . n A 1 15 LYS 15 11 11 LYS LYS A . n A 1 16 PRO 16 12 12 PRO PRO A . n A 1 17 ASP 17 13 13 ASP ASP A . n A 1 18 ALA 18 14 14 ALA ALA A . n A 1 19 VAL 19 15 15 VAL VAL A . n A 1 20 ALA 20 16 16 ALA ALA A . n A 1 21 LYS 21 17 17 LYS LYS A . n A 1 22 ASN 22 18 18 ASN ASN A . n A 1 23 VAL 23 19 19 VAL VAL A . n A 1 24 ILE 24 20 20 ILE ILE A . n A 1 25 GLY 25 21 21 GLY GLY A . n A 1 26 GLN 26 22 22 GLN GLN A . n A 1 27 ILE 27 23 23 ILE ILE A . n A 1 28 TYR 28 24 24 TYR TYR A . n A 1 29 SER 29 25 25 SER SER A . n A 1 30 ARG 30 26 26 ARG ARG A . n A 1 31 PHE 31 27 27 PHE PHE A . n A 1 32 GLU 32 28 28 GLU GLU A . n A 1 33 ASN 33 29 29 ASN ASN A . n A 1 34 ALA 34 30 30 ALA ALA A . n A 1 35 GLY 35 31 31 GLY GLY A . n A 1 36 LEU 36 32 32 LEU LEU A . n A 1 37 LYS 37 33 33 LYS LYS A . n A 1 38 ILE 38 34 34 ILE ILE A . n A 1 39 VAL 39 35 35 VAL VAL A . n A 1 40 ALA 40 36 36 ALA ALA A . n A 1 41 ALA 41 37 37 ALA ALA A . n A 1 42 ARG 42 38 38 ARG ARG A . n A 1 43 MET 43 39 39 MET MET A . n A 1 44 ALA 44 40 40 ALA ALA A . n A 1 45 HIS 45 41 41 HIS HIS A . n A 1 46 LEU 46 42 42 LEU LEU A . n A 1 47 SER 47 43 43 SER SER A . n A 1 48 ARG 48 44 44 ARG ARG A . n A 1 49 ALA 49 45 45 ALA ALA A . n A 1 50 ASP 50 46 46 ASP ASP A . n A 1 51 ALA 51 47 47 ALA ALA A . n A 1 52 GLU 52 48 48 GLU GLU A . n A 1 53 LYS 53 49 49 LYS LYS A . n A 1 54 PHE 54 50 50 PHE PHE A . n A 1 55 TYR 55 51 51 TYR TYR A . n A 1 56 ALA 56 52 52 ALA ALA A . n A 1 57 VAL 57 53 53 VAL VAL A . n A 1 58 HIS 58 54 54 HIS HIS A . n A 1 59 ALA 59 55 55 ALA ALA A . n A 1 60 GLU 60 56 56 GLU GLU A . n A 1 61 ARG 61 57 57 ARG ARG A . n A 1 62 PRO 62 58 58 PRO PRO A . n A 1 63 PHE 63 59 59 PHE PHE A . n A 1 64 PHE 64 60 60 PHE PHE A . n A 1 65 LYS 65 61 61 LYS LYS A . n A 1 66 ASP 66 62 62 ASP ASP A . n A 1 67 LEU 67 63 63 LEU LEU A . n A 1 68 VAL 68 64 64 VAL VAL A . n A 1 69 GLU 69 65 65 GLU GLU A . n A 1 70 PHE 70 66 66 PHE PHE A . n A 1 71 MET 71 67 67 MET MET A . n A 1 72 ILE 72 68 68 ILE ILE A . n A 1 73 SER 73 69 69 SER SER A . n A 1 74 GLY 74 70 70 GLY GLY A . n A 1 75 PRO 75 71 71 PRO PRO A . n A 1 76 VAL 76 72 72 VAL VAL A . n A 1 77 MET 77 73 73 MET MET A . n A 1 78 ILE 78 74 74 ILE ILE A . n A 1 79 GLN 79 75 75 GLN GLN A . n A 1 80 VAL 80 76 76 VAL VAL A . n A 1 81 LEU 81 77 77 LEU LEU A . n A 1 82 GLU 82 78 78 GLU GLU A . n A 1 83 GLY 83 79 79 GLY GLY A . n A 1 84 GLU 84 80 80 GLU GLU A . n A 1 85 ASP 85 81 81 ASP ASP A . n A 1 86 ALA 86 82 82 ALA ALA A . n A 1 87 ILE 87 83 83 ILE ILE A . n A 1 88 LEU 88 84 84 LEU LEU A . n A 1 89 LYS 89 85 85 LYS LYS A . n A 1 90 ASN 90 86 86 ASN ASN A . n A 1 91 ARG 91 87 87 ARG ARG A . n A 1 92 ASP 92 88 88 ASP ASP A . n A 1 93 LEU 93 89 89 LEU LEU A . n A 1 94 MET 94 90 90 MET MET A . n A 1 95 GLY 95 91 91 GLY GLY A . n A 1 96 ALA 96 92 92 ALA ALA A . n A 1 97 THR 97 93 93 THR THR A . n A 1 98 ASP 98 94 94 ASP ASP A . n A 1 99 PRO 99 95 95 PRO PRO A . n A 1 100 LYS 100 96 96 LYS LYS A . n A 1 101 LYS 101 97 97 LYS LYS A . n A 1 102 ALA 102 98 98 ALA ALA A . n A 1 103 GLU 103 99 99 GLU GLU A . n A 1 104 LYS 104 100 100 LYS LYS A . n A 1 105 GLY 105 101 101 GLY GLY A . n A 1 106 THR 106 102 102 THR THR A . n A 1 107 ILE 107 103 103 ILE ILE A . n A 1 108 ARG 108 104 104 ARG ARG A . n A 1 109 ALA 109 105 105 ALA ALA A . n A 1 110 ASP 110 106 106 ASP ASP A . n A 1 111 PHE 111 107 107 PHE PHE A . n A 1 112 ALA 112 108 108 ALA ALA A . n A 1 113 ASP 113 109 109 ASP ASP A . n A 1 114 SER 114 110 110 SER SER A . n A 1 115 ILE 115 111 111 ILE ILE A . n A 1 116 ASP 116 112 112 ASP ASP A . n A 1 117 ALA 117 113 113 ALA ALA A . n A 1 118 ASN 118 114 114 ASN ASN A . n A 1 119 ALA 119 115 115 ALA ALA A . n A 1 120 VAL 120 116 116 VAL VAL A . n A 1 121 HIS 121 117 117 HIS HIS A . n A 1 122 GLY 122 118 118 GLY GLY A . n A 1 123 SER 123 119 119 SER SER A . n A 1 124 ASP 124 120 120 ASP ASP A . n A 1 125 ALA 125 121 121 ALA ALA A . n A 1 126 PRO 126 122 122 PRO PRO A . n A 1 127 GLU 127 123 123 GLU GLU A . n A 1 128 THR 128 124 124 THR THR A . n A 1 129 ALA 129 125 125 ALA ALA A . n A 1 130 ARG 130 126 126 ARG ARG A . n A 1 131 VAL 131 127 127 VAL VAL A . n A 1 132 GLU 132 128 128 GLU GLU A . n A 1 133 ILE 133 129 129 ILE ILE A . n A 1 134 ALA 134 130 130 ALA ALA A . n A 1 135 PHE 135 131 131 PHE PHE A . n A 1 136 PHE 136 132 132 PHE PHE A . n A 1 137 PHE 137 133 133 PHE PHE A . n A 1 138 PRO 138 134 134 PRO PRO A . n A 1 139 GLU 139 135 135 GLU GLU A . n A 1 140 MET 140 136 136 MET MET A . n A 1 141 ASN 141 137 137 ASN ASN A . n A 1 142 VAL 142 138 138 VAL VAL A . n A 1 143 TYR 143 139 139 TYR TYR A . n A 1 144 SER 144 140 140 SER SER A . n A 1 145 ARG 145 141 141 ARG ARG A . n B 1 1 GLY 1 -3 ? ? ? B . n B 1 2 PRO 2 -2 ? ? ? B . n B 1 3 GLY 3 -1 ? ? ? B . n B 1 4 SER 4 0 ? ? ? B . n B 1 5 MET 5 1 ? ? ? B . n B 1 6 ALA 6 2 2 ALA ALA B . n B 1 7 LEU 7 3 3 LEU LEU B . n B 1 8 GLU 8 4 4 GLU GLU B . n B 1 9 ARG 9 5 5 ARG ARG B . n B 1 10 THR 10 6 6 THR THR B . n B 1 11 LEU 11 7 7 LEU LEU B . n B 1 12 SER 12 8 8 SER SER B . n B 1 13 ILE 13 9 9 ILE ILE B . n B 1 14 ILE 14 10 10 ILE ILE B . n B 1 15 LYS 15 11 11 LYS LYS B . n B 1 16 PRO 16 12 12 PRO PRO B . n B 1 17 ASP 17 13 13 ASP ASP B . n B 1 18 ALA 18 14 14 ALA ALA B . n B 1 19 VAL 19 15 15 VAL VAL B . n B 1 20 ALA 20 16 16 ALA ALA B . n B 1 21 LYS 21 17 17 LYS LYS B . n B 1 22 ASN 22 18 18 ASN ASN B . n B 1 23 VAL 23 19 19 VAL VAL B . n B 1 24 ILE 24 20 20 ILE ILE B . n B 1 25 GLY 25 21 21 GLY GLY B . n B 1 26 GLN 26 22 22 GLN GLN B . n B 1 27 ILE 27 23 23 ILE ILE B . n B 1 28 TYR 28 24 24 TYR TYR B . n B 1 29 SER 29 25 25 SER SER B . n B 1 30 ARG 30 26 26 ARG ARG B . n B 1 31 PHE 31 27 27 PHE PHE B . n B 1 32 GLU 32 28 28 GLU GLU B . n B 1 33 ASN 33 29 29 ASN ASN B . n B 1 34 ALA 34 30 30 ALA ALA B . n B 1 35 GLY 35 31 31 GLY GLY B . n B 1 36 LEU 36 32 32 LEU LEU B . n B 1 37 LYS 37 33 33 LYS LYS B . n B 1 38 ILE 38 34 34 ILE ILE B . n B 1 39 VAL 39 35 35 VAL VAL B . n B 1 40 ALA 40 36 36 ALA ALA B . n B 1 41 ALA 41 37 37 ALA ALA B . n B 1 42 ARG 42 38 38 ARG ARG B . n B 1 43 MET 43 39 39 MET MET B . n B 1 44 ALA 44 40 40 ALA ALA B . n B 1 45 HIS 45 41 41 HIS HIS B . n B 1 46 LEU 46 42 42 LEU LEU B . n B 1 47 SER 47 43 43 SER SER B . n B 1 48 ARG 48 44 44 ARG ARG B . n B 1 49 ALA 49 45 45 ALA ALA B . n B 1 50 ASP 50 46 46 ASP ASP B . n B 1 51 ALA 51 47 47 ALA ALA B . n B 1 52 GLU 52 48 48 GLU GLU B . n B 1 53 LYS 53 49 49 LYS LYS B . n B 1 54 PHE 54 50 50 PHE PHE B . n B 1 55 TYR 55 51 51 TYR TYR B . n B 1 56 ALA 56 52 52 ALA ALA B . n B 1 57 VAL 57 53 53 VAL VAL B . n B 1 58 HIS 58 54 54 HIS HIS B . n B 1 59 ALA 59 55 55 ALA ALA B . n B 1 60 GLU 60 56 56 GLU GLU B . n B 1 61 ARG 61 57 57 ARG ARG B . n B 1 62 PRO 62 58 58 PRO PRO B . n B 1 63 PHE 63 59 59 PHE PHE B . n B 1 64 PHE 64 60 60 PHE PHE B . n B 1 65 LYS 65 61 61 LYS LYS B . n B 1 66 ASP 66 62 62 ASP ASP B . n B 1 67 LEU 67 63 63 LEU LEU B . n B 1 68 VAL 68 64 64 VAL VAL B . n B 1 69 GLU 69 65 65 GLU GLU B . n B 1 70 PHE 70 66 66 PHE PHE B . n B 1 71 MET 71 67 67 MET MET B . n B 1 72 ILE 72 68 68 ILE ILE B . n B 1 73 SER 73 69 69 SER SER B . n B 1 74 GLY 74 70 70 GLY GLY B . n B 1 75 PRO 75 71 71 PRO PRO B . n B 1 76 VAL 76 72 72 VAL VAL B . n B 1 77 MET 77 73 73 MET MET B . n B 1 78 ILE 78 74 74 ILE ILE B . n B 1 79 GLN 79 75 75 GLN GLN B . n B 1 80 VAL 80 76 76 VAL VAL B . n B 1 81 LEU 81 77 77 LEU LEU B . n B 1 82 GLU 82 78 78 GLU GLU B . n B 1 83 GLY 83 79 79 GLY GLY B . n B 1 84 GLU 84 80 80 GLU GLU B . n B 1 85 ASP 85 81 81 ASP ASP B . n B 1 86 ALA 86 82 82 ALA ALA B . n B 1 87 ILE 87 83 83 ILE ILE B . n B 1 88 LEU 88 84 84 LEU LEU B . n B 1 89 LYS 89 85 85 LYS LYS B . n B 1 90 ASN 90 86 86 ASN ASN B . n B 1 91 ARG 91 87 87 ARG ARG B . n B 1 92 ASP 92 88 88 ASP ASP B . n B 1 93 LEU 93 89 89 LEU LEU B . n B 1 94 MET 94 90 90 MET MET B . n B 1 95 GLY 95 91 91 GLY GLY B . n B 1 96 ALA 96 92 92 ALA ALA B . n B 1 97 THR 97 93 93 THR THR B . n B 1 98 ASP 98 94 94 ASP ASP B . n B 1 99 PRO 99 95 95 PRO PRO B . n B 1 100 LYS 100 96 96 LYS LYS B . n B 1 101 LYS 101 97 97 LYS LYS B . n B 1 102 ALA 102 98 98 ALA ALA B . n B 1 103 GLU 103 99 99 GLU GLU B . n B 1 104 LYS 104 100 100 LYS LYS B . n B 1 105 GLY 105 101 101 GLY GLY B . n B 1 106 THR 106 102 102 THR THR B . n B 1 107 ILE 107 103 103 ILE ILE B . n B 1 108 ARG 108 104 104 ARG ARG B . n B 1 109 ALA 109 105 105 ALA ALA B . n B 1 110 ASP 110 106 106 ASP ASP B . n B 1 111 PHE 111 107 107 PHE PHE B . n B 1 112 ALA 112 108 108 ALA ALA B . n B 1 113 ASP 113 109 109 ASP ASP B . n B 1 114 SER 114 110 110 SER SER B . n B 1 115 ILE 115 111 111 ILE ILE B . n B 1 116 ASP 116 112 112 ASP ASP B . n B 1 117 ALA 117 113 113 ALA ALA B . n B 1 118 ASN 118 114 114 ASN ASN B . n B 1 119 ALA 119 115 115 ALA ALA B . n B 1 120 VAL 120 116 116 VAL VAL B . n B 1 121 HIS 121 117 117 HIS HIS B . n B 1 122 GLY 122 118 118 GLY GLY B . n B 1 123 SER 123 119 119 SER SER B . n B 1 124 ASP 124 120 120 ASP ASP B . n B 1 125 ALA 125 121 121 ALA ALA B . n B 1 126 PRO 126 122 122 PRO PRO B . n B 1 127 GLU 127 123 123 GLU GLU B . n B 1 128 THR 128 124 124 THR THR B . n B 1 129 ALA 129 125 125 ALA ALA B . n B 1 130 ARG 130 126 126 ARG ARG B . n B 1 131 VAL 131 127 127 VAL VAL B . n B 1 132 GLU 132 128 128 GLU GLU B . n B 1 133 ILE 133 129 129 ILE ILE B . n B 1 134 ALA 134 130 130 ALA ALA B . n B 1 135 PHE 135 131 131 PHE PHE B . n B 1 136 PHE 136 132 132 PHE PHE B . n B 1 137 PHE 137 133 133 PHE PHE B . n B 1 138 PRO 138 134 134 PRO PRO B . n B 1 139 GLU 139 135 135 GLU GLU B . n B 1 140 MET 140 136 136 MET MET B . n B 1 141 ASN 141 137 137 ASN ASN B . n B 1 142 VAL 142 138 138 VAL VAL B . n B 1 143 TYR 143 139 139 TYR TYR B . n B 1 144 SER 144 140 140 SER SER B . n B 1 145 ARG 145 141 141 ARG ARG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL 1 201 2 CL CL A . D 3 DMS 1 202 1 DMS DMS A . E 4 D5M 1 203 1 D5M DA A . F 2 CL 1 201 1 CL CL B . G 5 EDO 1 202 1 EDO EDO B . H 3 DMS 1 203 2 DMS DMS B . I 6 HOH 1 301 3 HOH HOH A . I 6 HOH 2 302 4 HOH HOH A . I 6 HOH 3 303 6 HOH HOH A . I 6 HOH 4 304 8 HOH HOH A . I 6 HOH 5 305 10 HOH HOH A . I 6 HOH 6 306 14 HOH HOH A . I 6 HOH 7 307 15 HOH HOH A . I 6 HOH 8 308 22 HOH HOH A . I 6 HOH 9 309 25 HOH HOH A . I 6 HOH 10 310 28 HOH HOH A . I 6 HOH 11 311 35 HOH HOH A . I 6 HOH 12 312 40 HOH HOH A . I 6 HOH 13 313 45 HOH HOH A . I 6 HOH 14 314 47 HOH HOH A . I 6 HOH 15 315 51 HOH HOH A . I 6 HOH 16 316 55 HOH HOH A . I 6 HOH 17 317 57 HOH HOH A . I 6 HOH 18 318 60 HOH HOH A . I 6 HOH 19 319 62 HOH HOH A . I 6 HOH 20 320 63 HOH HOH A . I 6 HOH 21 321 65 HOH HOH A . I 6 HOH 22 322 66 HOH HOH A . I 6 HOH 23 323 67 HOH HOH A . I 6 HOH 24 324 68 HOH HOH A . I 6 HOH 25 325 69 HOH HOH A . I 6 HOH 26 326 70 HOH HOH A . I 6 HOH 27 327 71 HOH HOH A . I 6 HOH 28 328 72 HOH HOH A . I 6 HOH 29 329 73 HOH HOH A . I 6 HOH 30 330 75 HOH HOH A . I 6 HOH 31 331 79 HOH HOH A . I 6 HOH 32 332 81 HOH HOH A . I 6 HOH 33 333 82 HOH HOH A . I 6 HOH 34 334 83 HOH HOH A . I 6 HOH 35 335 84 HOH HOH A . I 6 HOH 36 336 85 HOH HOH A . I 6 HOH 37 337 86 HOH HOH A . I 6 HOH 38 338 89 HOH HOH A . I 6 HOH 39 339 90 HOH HOH A . I 6 HOH 40 340 93 HOH HOH A . I 6 HOH 41 341 95 HOH HOH A . I 6 HOH 42 342 96 HOH HOH A . I 6 HOH 43 343 98 HOH HOH A . I 6 HOH 44 344 99 HOH HOH A . I 6 HOH 45 345 102 HOH HOH A . I 6 HOH 46 346 104 HOH HOH A . I 6 HOH 47 347 108 HOH HOH A . I 6 HOH 48 348 111 HOH HOH A . I 6 HOH 49 349 112 HOH HOH A . I 6 HOH 50 350 113 HOH HOH A . I 6 HOH 51 351 114 HOH HOH A . I 6 HOH 52 352 117 HOH HOH A . I 6 HOH 53 353 123 HOH HOH A . I 6 HOH 54 354 125 HOH HOH A . I 6 HOH 55 355 132 HOH HOH A . I 6 HOH 56 356 133 HOH HOH A . I 6 HOH 57 357 134 HOH HOH A . I 6 HOH 58 358 136 HOH HOH A . I 6 HOH 59 359 138 HOH HOH A . I 6 HOH 60 360 141 HOH HOH A . I 6 HOH 61 361 144 HOH HOH A . I 6 HOH 62 362 146 HOH HOH A . I 6 HOH 63 363 147 HOH HOH A . I 6 HOH 64 364 149 HOH HOH A . I 6 HOH 65 365 150 HOH HOH A . I 6 HOH 66 366 155 HOH HOH A . I 6 HOH 67 367 161 HOH HOH A . I 6 HOH 68 368 165 HOH HOH A . I 6 HOH 69 369 174 HOH HOH A . I 6 HOH 70 370 179 HOH HOH A . I 6 HOH 71 371 184 HOH HOH A . I 6 HOH 72 372 186 HOH HOH A . I 6 HOH 73 373 187 HOH HOH A . I 6 HOH 74 374 194 HOH HOH A . I 6 HOH 75 375 199 HOH HOH A . I 6 HOH 76 376 220 HOH HOH A . I 6 HOH 77 377 223 HOH HOH A . I 6 HOH 78 378 226 HOH HOH A . I 6 HOH 79 379 227 HOH HOH A . I 6 HOH 80 380 228 HOH HOH A . I 6 HOH 81 381 233 HOH HOH A . I 6 HOH 82 382 234 HOH HOH A . I 6 HOH 83 383 235 HOH HOH A . I 6 HOH 84 384 236 HOH HOH A . I 6 HOH 85 385 238 HOH HOH A . I 6 HOH 86 386 245 HOH HOH A . I 6 HOH 87 387 249 HOH HOH A . I 6 HOH 88 388 251 HOH HOH A . I 6 HOH 89 389 252 HOH HOH A . I 6 HOH 90 390 253 HOH HOH A . I 6 HOH 91 391 254 HOH HOH A . I 6 HOH 92 392 255 HOH HOH A . I 6 HOH 93 393 256 HOH HOH A . I 6 HOH 94 394 257 HOH HOH A . I 6 HOH 95 395 258 HOH HOH A . I 6 HOH 96 396 259 HOH HOH A . I 6 HOH 97 397 260 HOH HOH A . I 6 HOH 98 398 261 HOH HOH A . I 6 HOH 99 399 262 HOH HOH A . I 6 HOH 100 400 263 HOH HOH A . I 6 HOH 101 401 264 HOH HOH A . I 6 HOH 102 402 267 HOH HOH A . I 6 HOH 103 403 268 HOH HOH A . I 6 HOH 104 404 269 HOH HOH A . I 6 HOH 105 405 270 HOH HOH A . I 6 HOH 106 406 282 HOH HOH A . I 6 HOH 107 407 284 HOH HOH A . I 6 HOH 108 408 285 HOH HOH A . I 6 HOH 109 409 287 HOH HOH A . I 6 HOH 110 410 289 HOH HOH A . I 6 HOH 111 411 294 HOH HOH A . I 6 HOH 112 412 298 HOH HOH A . I 6 HOH 113 413 302 HOH HOH A . I 6 HOH 114 414 305 HOH HOH A . I 6 HOH 115 415 307 HOH HOH A . I 6 HOH 116 416 308 HOH HOH A . I 6 HOH 117 417 316 HOH HOH A . I 6 HOH 118 418 318 HOH HOH A . I 6 HOH 119 419 320 HOH HOH A . I 6 HOH 120 420 324 HOH HOH A . I 6 HOH 121 421 326 HOH HOH A . I 6 HOH 122 422 328 HOH HOH A . I 6 HOH 123 423 329 HOH HOH A . I 6 HOH 124 424 332 HOH HOH A . I 6 HOH 125 425 335 HOH HOH A . I 6 HOH 126 426 337 HOH HOH A . I 6 HOH 127 427 339 HOH HOH A . I 6 HOH 128 428 346 HOH HOH A . I 6 HOH 129 429 348 HOH HOH A . I 6 HOH 130 430 349 HOH HOH A . J 6 HOH 1 301 5 HOH HOH B . J 6 HOH 2 302 11 HOH HOH B . J 6 HOH 3 303 12 HOH HOH B . J 6 HOH 4 304 13 HOH HOH B . J 6 HOH 5 305 16 HOH HOH B . J 6 HOH 6 306 17 HOH HOH B . J 6 HOH 7 307 18 HOH HOH B . J 6 HOH 8 308 19 HOH HOH B . J 6 HOH 9 309 21 HOH HOH B . J 6 HOH 10 310 23 HOH HOH B . J 6 HOH 11 311 27 HOH HOH B . J 6 HOH 12 312 29 HOH HOH B . J 6 HOH 13 313 30 HOH HOH B . J 6 HOH 14 314 31 HOH HOH B . J 6 HOH 15 315 32 HOH HOH B . J 6 HOH 16 316 33 HOH HOH B . J 6 HOH 17 317 34 HOH HOH B . J 6 HOH 18 318 36 HOH HOH B . J 6 HOH 19 319 37 HOH HOH B . J 6 HOH 20 320 38 HOH HOH B . J 6 HOH 21 321 39 HOH HOH B . J 6 HOH 22 322 41 HOH HOH B . J 6 HOH 23 323 42 HOH HOH B . J 6 HOH 24 324 43 HOH HOH B . J 6 HOH 25 325 44 HOH HOH B . J 6 HOH 26 326 48 HOH HOH B . J 6 HOH 27 327 49 HOH HOH B . J 6 HOH 28 328 50 HOH HOH B . J 6 HOH 29 329 52 HOH HOH B . J 6 HOH 30 330 53 HOH HOH B . J 6 HOH 31 331 54 HOH HOH B . J 6 HOH 32 332 56 HOH HOH B . J 6 HOH 33 333 58 HOH HOH B . J 6 HOH 34 334 59 HOH HOH B . J 6 HOH 35 335 64 HOH HOH B . J 6 HOH 36 336 76 HOH HOH B . J 6 HOH 37 337 78 HOH HOH B . J 6 HOH 38 338 80 HOH HOH B . J 6 HOH 39 339 87 HOH HOH B . J 6 HOH 40 340 88 HOH HOH B . J 6 HOH 41 341 91 HOH HOH B . J 6 HOH 42 342 94 HOH HOH B . J 6 HOH 43 343 97 HOH HOH B . J 6 HOH 44 344 100 HOH HOH B . J 6 HOH 45 345 101 HOH HOH B . J 6 HOH 46 346 103 HOH HOH B . J 6 HOH 47 347 105 HOH HOH B . J 6 HOH 48 348 106 HOH HOH B . J 6 HOH 49 349 107 HOH HOH B . J 6 HOH 50 350 109 HOH HOH B . J 6 HOH 51 351 110 HOH HOH B . J 6 HOH 52 352 115 HOH HOH B . J 6 HOH 53 353 118 HOH HOH B . J 6 HOH 54 354 119 HOH HOH B . J 6 HOH 55 355 120 HOH HOH B . J 6 HOH 56 356 121 HOH HOH B . J 6 HOH 57 357 122 HOH HOH B . J 6 HOH 58 358 128 HOH HOH B . J 6 HOH 59 359 129 HOH HOH B . J 6 HOH 60 360 130 HOH HOH B . J 6 HOH 61 361 135 HOH HOH B . J 6 HOH 62 362 137 HOH HOH B . J 6 HOH 63 363 139 HOH HOH B . J 6 HOH 64 364 140 HOH HOH B . J 6 HOH 65 365 143 HOH HOH B . J 6 HOH 66 366 145 HOH HOH B . J 6 HOH 67 367 152 HOH HOH B . J 6 HOH 68 368 153 HOH HOH B . J 6 HOH 69 369 154 HOH HOH B . J 6 HOH 70 370 156 HOH HOH B . J 6 HOH 71 371 157 HOH HOH B . J 6 HOH 72 372 160 HOH HOH B . J 6 HOH 73 373 162 HOH HOH B . J 6 HOH 74 374 163 HOH HOH B . J 6 HOH 75 375 166 HOH HOH B . J 6 HOH 76 376 167 HOH HOH B . J 6 HOH 77 377 169 HOH HOH B . J 6 HOH 78 378 170 HOH HOH B . J 6 HOH 79 379 173 HOH HOH B . J 6 HOH 80 380 175 HOH HOH B . J 6 HOH 81 381 176 HOH HOH B . J 6 HOH 82 382 180 HOH HOH B . J 6 HOH 83 383 189 HOH HOH B . J 6 HOH 84 384 190 HOH HOH B . J 6 HOH 85 385 191 HOH HOH B . J 6 HOH 86 386 193 HOH HOH B . J 6 HOH 87 387 197 HOH HOH B . J 6 HOH 88 388 200 HOH HOH B . J 6 HOH 89 389 201 HOH HOH B . J 6 HOH 90 390 203 HOH HOH B . J 6 HOH 91 391 204 HOH HOH B . J 6 HOH 92 392 211 HOH HOH B . J 6 HOH 93 393 213 HOH HOH B . J 6 HOH 94 394 214 HOH HOH B . J 6 HOH 95 395 218 HOH HOH B . J 6 HOH 96 396 219 HOH HOH B . J 6 HOH 97 397 221 HOH HOH B . J 6 HOH 98 398 222 HOH HOH B . J 6 HOH 99 399 229 HOH HOH B . J 6 HOH 100 400 231 HOH HOH B . J 6 HOH 101 401 237 HOH HOH B . J 6 HOH 102 402 242 HOH HOH B . J 6 HOH 103 403 265 HOH HOH B . J 6 HOH 104 404 266 HOH HOH B . J 6 HOH 105 405 271 HOH HOH B . J 6 HOH 106 406 272 HOH HOH B . J 6 HOH 107 407 273 HOH HOH B . J 6 HOH 108 408 274 HOH HOH B . J 6 HOH 109 409 275 HOH HOH B . J 6 HOH 110 410 276 HOH HOH B . J 6 HOH 111 411 277 HOH HOH B . J 6 HOH 112 412 278 HOH HOH B . J 6 HOH 113 413 279 HOH HOH B . J 6 HOH 114 414 280 HOH HOH B . J 6 HOH 115 415 288 HOH HOH B . J 6 HOH 116 416 290 HOH HOH B . J 6 HOH 117 417 292 HOH HOH B . J 6 HOH 118 418 293 HOH HOH B . J 6 HOH 119 419 295 HOH HOH B . J 6 HOH 120 420 299 HOH HOH B . J 6 HOH 121 421 303 HOH HOH B . J 6 HOH 122 422 304 HOH HOH B . J 6 HOH 123 423 306 HOH HOH B . J 6 HOH 124 424 309 HOH HOH B . J 6 HOH 125 425 311 HOH HOH B . J 6 HOH 126 426 312 HOH HOH B . J 6 HOH 127 427 313 HOH HOH B . J 6 HOH 128 428 314 HOH HOH B . J 6 HOH 129 429 315 HOH HOH B . J 6 HOH 130 430 321 HOH HOH B . J 6 HOH 131 431 322 HOH HOH B . J 6 HOH 132 432 327 HOH HOH B . J 6 HOH 133 433 331 HOH HOH B . J 6 HOH 134 434 333 HOH HOH B . J 6 HOH 135 435 336 HOH HOH B . J 6 HOH 136 436 340 HOH HOH B . J 6 HOH 137 437 341 HOH HOH B . J 6 HOH 138 438 342 HOH HOH B . J 6 HOH 139 439 343 HOH HOH B . J 6 HOH 140 440 344 HOH HOH B . J 6 HOH 141 441 345 HOH HOH B . J 6 HOH 142 442 347 HOH HOH B . J 6 HOH 143 443 350 HOH HOH B . J 6 HOH 144 444 351 HOH HOH B . J 6 HOH 145 445 352 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER 0 ? OG ? A SER 4 OG 2 1 Y 1 A GLU 56 ? CG ? A GLU 60 CG 3 1 Y 1 A GLU 56 ? CD ? A GLU 60 CD 4 1 Y 1 A GLU 56 ? OE1 ? A GLU 60 OE1 5 1 Y 1 A GLU 56 ? OE2 ? A GLU 60 OE2 6 1 Y 1 A LYS 61 ? CG ? A LYS 65 CG 7 1 Y 1 A LYS 61 ? CD ? A LYS 65 CD 8 1 Y 1 A LYS 61 ? CE ? A LYS 65 CE 9 1 Y 1 A LYS 61 ? NZ ? A LYS 65 NZ 10 1 Y 1 A LEU 84 ? CG ? A LEU 88 CG 11 1 Y 1 A LEU 84 ? CD1 ? A LEU 88 CD1 12 1 Y 1 A LEU 84 ? CD2 ? A LEU 88 CD2 13 1 Y 1 A LYS 97 ? CG ? A LYS 101 CG 14 1 Y 1 A LYS 97 ? CD ? A LYS 101 CD 15 1 Y 1 A LYS 97 ? CE ? A LYS 101 CE 16 1 Y 1 A LYS 97 ? NZ ? A LYS 101 NZ 17 1 Y 1 A LYS 100 ? CG ? A LYS 104 CG 18 1 Y 1 A LYS 100 ? CD ? A LYS 104 CD 19 1 Y 1 A LYS 100 ? CE ? A LYS 104 CE 20 1 Y 1 A LYS 100 ? NZ ? A LYS 104 NZ 21 1 Y 1 B LYS 61 ? CG ? B LYS 65 CG 22 1 Y 1 B LYS 61 ? CD ? B LYS 65 CD 23 1 Y 1 B LYS 61 ? CE ? B LYS 65 CE 24 1 Y 1 B LYS 61 ? NZ ? B LYS 65 NZ 25 1 Y 1 B LYS 96 ? CG ? B LYS 100 CG 26 1 Y 1 B LYS 96 ? CD ? B LYS 100 CD 27 1 Y 1 B LYS 96 ? CE ? B LYS 100 CE 28 1 Y 1 B LYS 96 ? NZ ? B LYS 100 NZ 29 1 Y 1 B LYS 100 ? CG ? B LYS 104 CG 30 1 Y 1 B LYS 100 ? CD ? B LYS 104 CD 31 1 Y 1 B LYS 100 ? CE ? B LYS 104 CE 32 1 Y 1 B LYS 100 ? NZ ? B LYS 104 NZ # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 2 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 XDS . ? ? ? ? 'data reduction' ? ? ? # _cell.length_a 90.680 _cell.length_b 90.680 _cell.length_c 90.430 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4EK2 _cell.pdbx_unique_axis ? _cell.Z_PDB 16 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 41 2 2' _symmetry.entry_id 4EK2 _symmetry.Int_Tables_number 91 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 4EK2 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.92 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 57.82 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7 _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;ButhA.00438.a.A1 PS01186 at 42.64 mg/mL in 1.5 M ammonium sulfate, 0.1 M Bis-Tris propane, pH 7.0, 10 mM dAMP, cryoprotectant: 15% ethylene glycol, VAPOR DIFFUSION, SITTING DROP, temperature 289K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU SATURN 944' _diffrn_detector.pdbx_collection_date 2012-02-27 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU FR-E+ SUPERBRIGHT' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 4EK2 _reflns.d_resolution_high 2.000 _reflns.number_obs 25415 _reflns.pdbx_Rmerge_I_obs 0.066 _reflns.pdbx_netI_over_sigmaI 30.21 _reflns.percent_possible_obs 97.2 _reflns.B_iso_Wilson_estimate 19.831 _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 40.553 _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.000 2.050 081 ? 1593 0.219 7.95 ? ? ? ? ? 84.4 1 1 2.050 2.110 1594 ? 1709 0.190 10.42 ? ? ? ? ? 91.9 2 1 2.110 2.170 5103 ? 1772 0.195 12.17 ? ? ? ? ? 99.7 3 1 2.170 2.240 5187 ? 1668 0.212 12.86 ? ? ? ? ? 95.5 4 1 2.240 2.310 3432 ? 1543 0.113 24.66 ? ? ? ? ? 90.2 5 1 2.310 2.390 5504 ? 1641 0.142 16.80 ? ? ? ? ? 99.9 6 1 2.390 2.480 4952 ? 1570 0.127 18.74 ? ? ? ? ? 100.0 7 1 2.480 2.580 4728 ? 1551 0.113 19.79 ? ? ? ? ? 100.0 8 1 2.580 2.700 3960 ? 1465 0.101 22.18 ? ? ? ? ? 100.0 9 1 2.700 2.830 3540 ? 1422 0.083 26.21 ? ? ? ? ? 100.0 10 1 2.830 2.980 2872 ? 1344 0.067 31.63 ? ? ? ? ? 100.0 11 1 2.980 3.160 2147 ? 1276 0.055 36.70 ? ? ? ? ? 100.0 12 1 3.160 3.380 1571 ? 1218 0.043 44.41 ? ? ? ? ? 100.0 13 1 3.380 3.650 0473 ? 1125 0.038 52.44 ? ? ? ? ? 100.0 14 1 3.650 4.000 076 ? 1033 0.038 59.73 ? ? ? ? ? 98.0 15 1 4.000 4.470 881 ? 946 0.025 71.17 ? ? ? ? ? 99.9 16 1 4.470 5.160 924 ? 852 0.027 69.07 ? ? ? ? ? 100.0 17 1 5.160 6.320 823 ? 743 0.036 51.50 ? ? ? ? ? 100.0 18 1 6.320 8.940 124 ? 585 0.027 63.96 ? ? ? ? ? 100.0 19 1 8.940 40.553 2723 ? 359 0.018 91.09 ? ? ? ? ? 96.5 20 1 # _refine.entry_id 4EK2 _refine.ls_d_res_high 2.000 _refine.ls_d_res_low 40.553 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 97.22 _refine.ls_number_reflns_obs 25383 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;U VALUES : WITH TLS ADDED HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1916 _refine.ls_R_factor_R_work 0.1897 _refine.ls_wR_factor_R_work 0.1595 _refine.ls_R_factor_R_free 0.2282 _refine.ls_wR_factor_R_free 0.1901 _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1295 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 16.6122 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.2400 _refine.aniso_B[2][2] -0.2400 _refine.aniso_B[3][3] 0.4900 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9270 _refine.correlation_coeff_Fo_to_Fc_free 0.9080 _refine.overall_SU_R_Cruickshank_DPI 0.1652 _refine.overall_SU_R_free 0.1516 _refine.pdbx_overall_ESU_R 0.1650 _refine.pdbx_overall_ESU_R_Free 0.1520 _refine.overall_SU_ML 0.0870 _refine.overall_SU_B 6.7910 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 4DUT' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8646 _refine.B_iso_max 70.970 _refine.B_iso_min 2.000 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.300 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2162 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 36 _refine_hist.number_atoms_solvent 275 _refine_hist.number_atoms_total 2473 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 40.553 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 2285 0.013 0.022 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1546 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 3099 1.332 1.971 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 3756 0.923 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 294 5.729 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 108 32.722 23.611 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 375 14.022 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 19 18.641 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 346 0.084 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 2584 0.006 0.021 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 484 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 1431 0.615 1.500 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 571 0.159 1.500 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 2293 1.103 2.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 854 1.885 3.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 799 3.149 4.500 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.000 _refine_ls_shell.d_res_low 2.052 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 84.39 _refine_ls_shell.number_reflns_R_work 1504 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.1900 _refine_ls_shell.R_factor_R_free 0.3120 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 86 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1590 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4EK2 _struct.title 'The structure of nucleoside diphosphate kinase (NDK) from Burkholderia thailandensis bound to deoxyadenosine monophosphate' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4EK2 _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;Seattle Structural Genomics Center for Infectious Disease, SSGCID, dAMP, NIAID, National Institute of Allergy and Infectious Diseases, TRANSFERASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 2 ? G N N 5 ? H N N 3 ? I N N 6 ? J N N 6 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NDK_BURTA _struct_ref.pdbx_db_accession Q2SWE7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MALERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKDLVEFMISGPVMIQVLEGE DAILKNRDLMGATDPKKAEKGTIRADFADSIDANAVHGSDAPETARVEIAFFFPEMNVYSR ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4EK2 A 5 ? 145 ? Q2SWE7 1 ? 141 ? 1 141 2 1 4EK2 B 5 ? 145 ? Q2SWE7 1 ? 141 ? 1 141 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4EK2 GLY A 1 ? UNP Q2SWE7 ? ? 'expression tag' -3 1 1 4EK2 PRO A 2 ? UNP Q2SWE7 ? ? 'expression tag' -2 2 1 4EK2 GLY A 3 ? UNP Q2SWE7 ? ? 'expression tag' -1 3 1 4EK2 SER A 4 ? UNP Q2SWE7 ? ? 'expression tag' 0 4 2 4EK2 GLY B 1 ? UNP Q2SWE7 ? ? 'expression tag' -3 5 2 4EK2 PRO B 2 ? UNP Q2SWE7 ? ? 'expression tag' -2 6 2 4EK2 GLY B 3 ? UNP Q2SWE7 ? ? 'expression tag' -1 7 2 4EK2 SER B 4 ? UNP Q2SWE7 ? ? 'expression tag' 0 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2370 ? 1 MORE -28 ? 1 'SSA (A^2)' 13110 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 15 ? LYS A 21 ? LYS A 11 LYS A 17 1 ? 7 HELX_P HELX_P2 2 VAL A 23 ? ALA A 34 ? VAL A 19 ALA A 30 1 ? 12 HELX_P HELX_P3 3 SER A 47 ? TYR A 55 ? SER A 43 TYR A 51 1 ? 9 HELX_P HELX_P4 4 ALA A 56 ? ALA A 59 ? ALA A 52 ALA A 55 5 ? 4 HELX_P HELX_P5 5 PHE A 63 ? ILE A 72 ? PHE A 59 ILE A 68 1 ? 10 HELX_P HELX_P6 6 ASP A 85 ? GLY A 95 ? ASP A 81 GLY A 91 1 ? 11 HELX_P HELX_P7 7 THR A 106 ? ALA A 112 ? THR A 102 ALA A 108 1 ? 7 HELX_P HELX_P8 8 ALA A 125 ? PHE A 137 ? ALA A 121 PHE A 133 1 ? 13 HELX_P HELX_P9 9 PRO A 138 ? VAL A 142 ? PRO A 134 VAL A 138 5 ? 5 HELX_P HELX_P10 10 LYS B 15 ? LYS B 21 ? LYS B 11 LYS B 17 1 ? 7 HELX_P HELX_P11 11 VAL B 23 ? ALA B 34 ? VAL B 19 ALA B 30 1 ? 12 HELX_P HELX_P12 12 SER B 47 ? TYR B 55 ? SER B 43 TYR B 51 1 ? 9 HELX_P HELX_P13 13 ALA B 56 ? ALA B 59 ? ALA B 52 ALA B 55 5 ? 4 HELX_P HELX_P14 14 PHE B 63 ? ILE B 72 ? PHE B 59 ILE B 68 1 ? 10 HELX_P HELX_P15 15 ASP B 85 ? GLY B 95 ? ASP B 81 GLY B 91 1 ? 11 HELX_P HELX_P16 16 THR B 106 ? ALA B 112 ? THR B 102 ALA B 108 1 ? 7 HELX_P HELX_P17 17 ALA B 125 ? PHE B 137 ? ALA B 121 PHE B 133 1 ? 13 HELX_P HELX_P18 18 PRO B 138 ? VAL B 142 ? PRO B 134 VAL B 138 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 37 ? ALA A 44 ? LYS A 33 ALA A 40 A 2 VAL A 76 ? GLU A 84 ? VAL A 72 GLU A 80 A 3 LEU A 7 ? ILE A 14 ? LEU A 3 ILE A 10 A 4 VAL A 120 ? GLY A 122 ? VAL A 116 GLY A 118 B 1 LYS B 37 ? ALA B 44 ? LYS B 33 ALA B 40 B 2 VAL B 76 ? GLU B 82 ? VAL B 72 GLU B 78 B 3 ARG B 9 ? ILE B 14 ? ARG B 5 ILE B 10 B 4 VAL B 120 ? GLY B 122 ? VAL B 116 GLY B 118 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ALA A 44 ? N ALA A 40 O VAL A 76 ? O VAL A 72 A 2 3 O MET A 77 ? O MET A 73 N ILE A 14 ? N ILE A 10 A 3 4 N ILE A 13 ? N ILE A 9 O HIS A 121 ? O HIS A 117 B 1 2 N ARG B 42 ? N ARG B 38 O ILE B 78 ? O ILE B 74 B 2 3 O MET B 77 ? O MET B 73 N ILE B 14 ? N ILE B 10 B 3 4 N ILE B 13 ? N ILE B 9 O HIS B 121 ? O HIS B 117 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CL 201 ? 3 'BINDING SITE FOR RESIDUE CL A 201' AC2 Software A DMS 202 ? 8 'BINDING SITE FOR RESIDUE DMS A 202' AC3 Software A D5M 203 ? 11 'BINDING SITE FOR RESIDUE D5M A 203' AC4 Software B CL 201 ? 3 'BINDING SITE FOR RESIDUE CL B 201' AC5 Software B EDO 202 ? 5 'BINDING SITE FOR RESIDUE EDO B 202' AC6 Software B DMS 203 ? 4 'BINDING SITE FOR RESIDUE DMS B 203' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 LYS A 15 ? LYS A 11 . ? 1_555 ? 2 AC1 3 TYR A 55 ? TYR A 51 . ? 1_555 ? 3 AC1 3 HIS A 121 ? HIS A 117 . ? 1_555 ? 4 AC2 8 GLU A 8 ? GLU A 4 . ? 1_555 ? 5 AC2 8 ARG A 9 ? ARG A 5 . ? 1_555 ? 6 AC2 8 PRO A 126 ? PRO A 122 . ? 1_555 ? 7 AC2 8 ALA A 129 ? ALA A 125 . ? 1_555 ? 8 AC2 8 ARG A 130 ? ARG A 126 . ? 1_555 ? 9 AC2 8 ILE A 133 ? ILE A 129 . ? 1_555 ? 10 AC2 8 D5M E . ? D5M A 203 . ? 1_555 ? 11 AC2 8 HOH I . ? HOH A 430 . ? 1_555 ? 12 AC3 11 ALA A 6 ? ALA A 2 . ? 1_555 ? 13 AC3 11 LEU A 7 ? LEU A 3 . ? 1_555 ? 14 AC3 11 DMS D . ? DMS A 202 . ? 1_555 ? 15 AC3 11 HOH I . ? HOH A 349 . ? 1_555 ? 16 AC3 11 HOH I . ? HOH A 429 . ? 1_555 ? 17 AC3 11 HOH I . ? HOH A 430 . ? 1_555 ? 18 AC3 11 PHE B 63 ? PHE B 59 . ? 4_454 ? 19 AC3 11 LEU B 67 ? LEU B 63 . ? 4_454 ? 20 AC3 11 THR B 97 ? THR B 93 . ? 4_454 ? 21 AC3 11 ASP B 116 ? ASP B 112 . ? 4_454 ? 22 AC3 11 HOH J . ? HOH B 399 . ? 4_454 ? 23 AC4 3 LYS B 15 ? LYS B 11 . ? 1_555 ? 24 AC4 3 TYR B 55 ? TYR B 51 . ? 1_555 ? 25 AC4 3 HIS B 121 ? HIS B 117 . ? 1_555 ? 26 AC5 5 PHE B 54 ? PHE B 50 . ? 1_555 ? 27 AC5 5 TYR B 55 ? TYR B 51 . ? 1_555 ? 28 AC5 5 VAL B 57 ? VAL B 53 . ? 1_555 ? 29 AC5 5 HIS B 58 ? HIS B 54 . ? 1_555 ? 30 AC5 5 GLU B 132 ? GLU B 128 . ? 1_555 ? 31 AC6 4 GLU B 8 ? GLU B 4 . ? 1_555 ? 32 AC6 4 ARG B 9 ? ARG B 5 . ? 1_555 ? 33 AC6 4 PRO B 126 ? PRO B 122 . ? 1_555 ? 34 AC6 4 ARG B 130 ? ARG B 126 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 115 ? ? 74.30 -42.12 2 1 ALA B 115 ? ? 76.02 -44.06 # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NIAID, National Institute of Allergy and Infectious Diseases' _pdbx_SG_project.full_name_of_center 'Seattle Structural Genomics Center for Infectious Disease' _pdbx_SG_project.initial_of_center SSGCID # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 389 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id I _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -16.2148 24.2287 -5.2175 0.0318 0.0415 0.0299 -0.0012 0.0100 -0.0232 1.6470 0.6818 0.6444 0.1689 0.0786 -0.2678 -0.0367 0.0398 -0.0031 0.1394 -0.1117 0.0290 -0.0646 0.0174 -0.0495 'X-RAY DIFFRACTION' 2 ? refined -11.5639 7.2396 -1.3805 0.1676 0.0307 0.2802 0.0011 0.0648 -0.0803 5.6279 3.2572 2.9684 0.5362 1.2334 -0.4976 -0.0192 -0.0452 0.0644 0.4131 -0.8634 -0.2445 -0.4572 0.4023 0.1392 'X-RAY DIFFRACTION' 3 ? refined -18.3990 21.2666 -11.1139 0.0679 0.0696 0.0375 -0.0041 0.0091 -0.0331 3.5571 1.0086 1.9352 0.0698 0.8701 0.0098 0.0332 0.0323 -0.0654 0.3190 -0.2364 -0.0039 -0.1861 0.1496 -0.0950 'X-RAY DIFFRACTION' 4 ? refined -17.4796 18.6421 -7.4939 0.0342 0.0623 0.0393 0.0028 0.0002 -0.0406 1.8692 1.0748 0.9838 0.4498 -0.1262 0.1222 -0.0430 0.0712 -0.0282 0.2931 -0.2610 -0.1083 -0.0351 0.0928 -0.0434 'X-RAY DIFFRACTION' 5 ? refined -16.4563 36.4748 3.3840 0.0400 0.0212 0.0358 0.0053 0.0103 -0.0025 1.0627 0.6971 0.9478 0.0199 -0.1697 -0.0082 0.0200 0.0284 -0.0485 -0.0118 0.0411 0.0359 0.0395 -0.0820 -0.0277 'X-RAY DIFFRACTION' 6 ? refined -26.9232 47.7022 12.6425 0.2449 0.0908 0.0393 0.0213 0.0949 -0.0150 1.5888 7.5986 5.4398 0.4269 1.7394 1.8586 0.2047 -0.1107 -0.0940 -0.2293 0.1411 0.2349 -0.0817 -0.5989 -0.2252 'X-RAY DIFFRACTION' 7 ? refined -11.4724 41.0119 6.0962 0.0690 0.0298 0.0311 0.0013 0.0231 -0.0101 3.0983 1.4745 0.3274 -0.5632 0.3145 -0.1361 0.0586 0.0142 -0.0728 -0.1022 0.0724 -0.1152 0.0805 -0.1102 0.0036 'X-RAY DIFFRACTION' 8 ? refined -14.8641 40.8520 7.1162 0.0334 0.0195 0.0536 -0.0051 0.0275 -0.0134 0.7919 1.4335 1.3596 -0.0441 -0.2357 -0.2720 0.0829 -0.0161 -0.0668 -0.0229 0.1214 0.0443 0.0626 -0.1788 -0.0079 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 0 A 45 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 46 A 70 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 A 71 A 94 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 A 95 A 141 ? . . . . ? 'X-RAY DIFFRACTION' 5 5 B 2 B 48 ? . . . . ? 'X-RAY DIFFRACTION' 6 6 B 49 B 67 ? . . . . ? 'X-RAY DIFFRACTION' 7 7 B 68 B 93 ? . . . . ? 'X-RAY DIFFRACTION' 8 8 B 94 B 141 ? . . . . ? # _phasing.method MR # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -3 ? A GLY 1 2 1 Y 1 A PRO -2 ? A PRO 2 3 1 Y 1 A GLY -1 ? A GLY 3 4 1 Y 1 B GLY -3 ? B GLY 1 5 1 Y 1 B PRO -2 ? B PRO 2 6 1 Y 1 B GLY -1 ? B GLY 3 7 1 Y 1 B SER 0 ? B SER 4 8 1 Y 1 B MET 1 ? B MET 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 D5M "O5'" O N N 75 D5M "C5'" C N N 76 D5M "C4'" C N R 77 D5M "O4'" O N N 78 D5M "C3'" C N S 79 D5M "O3'" O N N 80 D5M "C2'" C N N 81 D5M "C1'" C N R 82 D5M N9 N Y N 83 D5M C8 C Y N 84 D5M N7 N Y N 85 D5M C5 C Y N 86 D5M C6 C Y N 87 D5M N6 N N N 88 D5M N1 N Y N 89 D5M C2 C Y N 90 D5M N3 N Y N 91 D5M C4 C Y N 92 D5M P P N N 93 D5M O1P O N N 94 D5M O3P O N N 95 D5M O2P O N N 96 D5M "H5'1" H N N 97 D5M "H5'2" H N N 98 D5M "H4'" H N N 99 D5M H1 H N N 100 D5M "H3'" H N N 101 D5M "H2'1" H N N 102 D5M "H2'2" H N N 103 D5M "H1'" H N N 104 D5M H8 H N N 105 D5M HN61 H N N 106 D5M HN62 H N N 107 D5M H2 H N N 108 D5M H3P H N N 109 D5M H2P H N N 110 DMS S S N N 111 DMS O O N N 112 DMS C1 C N N 113 DMS C2 C N N 114 DMS H11 H N N 115 DMS H12 H N N 116 DMS H13 H N N 117 DMS H21 H N N 118 DMS H22 H N N 119 DMS H23 H N N 120 EDO C1 C N N 121 EDO O1 O N N 122 EDO C2 C N N 123 EDO O2 O N N 124 EDO H11 H N N 125 EDO H12 H N N 126 EDO HO1 H N N 127 EDO H21 H N N 128 EDO H22 H N N 129 EDO HO2 H N N 130 GLN N N N N 131 GLN CA C N S 132 GLN C C N N 133 GLN O O N N 134 GLN CB C N N 135 GLN CG C N N 136 GLN CD C N N 137 GLN OE1 O N N 138 GLN NE2 N N N 139 GLN OXT O N N 140 GLN H H N N 141 GLN H2 H N N 142 GLN HA H N N 143 GLN HB2 H N N 144 GLN HB3 H N N 145 GLN HG2 H N N 146 GLN HG3 H N N 147 GLN HE21 H N N 148 GLN HE22 H N N 149 GLN HXT H N N 150 GLU N N N N 151 GLU CA C N S 152 GLU C C N N 153 GLU O O N N 154 GLU CB C N N 155 GLU CG C N N 156 GLU CD C N N 157 GLU OE1 O N N 158 GLU OE2 O N N 159 GLU OXT O N N 160 GLU H H N N 161 GLU H2 H N N 162 GLU HA H N N 163 GLU HB2 H N N 164 GLU HB3 H N N 165 GLU HG2 H N N 166 GLU HG3 H N N 167 GLU HE2 H N N 168 GLU HXT H N N 169 GLY N N N N 170 GLY CA C N N 171 GLY C C N N 172 GLY O O N N 173 GLY OXT O N N 174 GLY H H N N 175 GLY H2 H N N 176 GLY HA2 H N N 177 GLY HA3 H N N 178 GLY HXT H N N 179 HIS N N N N 180 HIS CA C N S 181 HIS C C N N 182 HIS O O N N 183 HIS CB C N N 184 HIS CG C Y N 185 HIS ND1 N Y N 186 HIS CD2 C Y N 187 HIS CE1 C Y N 188 HIS NE2 N Y N 189 HIS OXT O N N 190 HIS H H N N 191 HIS H2 H N N 192 HIS HA H N N 193 HIS HB2 H N N 194 HIS HB3 H N N 195 HIS HD1 H N N 196 HIS HD2 H N N 197 HIS HE1 H N N 198 HIS HE2 H N N 199 HIS HXT H N N 200 HOH O O N N 201 HOH H1 H N N 202 HOH H2 H N N 203 ILE N N N N 204 ILE CA C N S 205 ILE C C N N 206 ILE O O N N 207 ILE CB C N S 208 ILE CG1 C N N 209 ILE CG2 C N N 210 ILE CD1 C N N 211 ILE OXT O N N 212 ILE H H N N 213 ILE H2 H N N 214 ILE HA H N N 215 ILE HB H N N 216 ILE HG12 H N N 217 ILE HG13 H N N 218 ILE HG21 H N N 219 ILE HG22 H N N 220 ILE HG23 H N N 221 ILE HD11 H N N 222 ILE HD12 H N N 223 ILE HD13 H N N 224 ILE HXT H N N 225 LEU N N N N 226 LEU CA C N S 227 LEU C C N N 228 LEU O O N N 229 LEU CB C N N 230 LEU CG C N N 231 LEU CD1 C N N 232 LEU CD2 C N N 233 LEU OXT O N N 234 LEU H H N N 235 LEU H2 H N N 236 LEU HA H N N 237 LEU HB2 H N N 238 LEU HB3 H N N 239 LEU HG H N N 240 LEU HD11 H N N 241 LEU HD12 H N N 242 LEU HD13 H N N 243 LEU HD21 H N N 244 LEU HD22 H N N 245 LEU HD23 H N N 246 LEU HXT H N N 247 LYS N N N N 248 LYS CA C N S 249 LYS C C N N 250 LYS O O N N 251 LYS CB C N N 252 LYS CG C N N 253 LYS CD C N N 254 LYS CE C N N 255 LYS NZ N N N 256 LYS OXT O N N 257 LYS H H N N 258 LYS H2 H N N 259 LYS HA H N N 260 LYS HB2 H N N 261 LYS HB3 H N N 262 LYS HG2 H N N 263 LYS HG3 H N N 264 LYS HD2 H N N 265 LYS HD3 H N N 266 LYS HE2 H N N 267 LYS HE3 H N N 268 LYS HZ1 H N N 269 LYS HZ2 H N N 270 LYS HZ3 H N N 271 LYS HXT H N N 272 MET N N N N 273 MET CA C N S 274 MET C C N N 275 MET O O N N 276 MET CB C N N 277 MET CG C N N 278 MET SD S N N 279 MET CE C N N 280 MET OXT O N N 281 MET H H N N 282 MET H2 H N N 283 MET HA H N N 284 MET HB2 H N N 285 MET HB3 H N N 286 MET HG2 H N N 287 MET HG3 H N N 288 MET HE1 H N N 289 MET HE2 H N N 290 MET HE3 H N N 291 MET HXT H N N 292 PHE N N N N 293 PHE CA C N S 294 PHE C C N N 295 PHE O O N N 296 PHE CB C N N 297 PHE CG C Y N 298 PHE CD1 C Y N 299 PHE CD2 C Y N 300 PHE CE1 C Y N 301 PHE CE2 C Y N 302 PHE CZ C Y N 303 PHE OXT O N N 304 PHE H H N N 305 PHE H2 H N N 306 PHE HA H N N 307 PHE HB2 H N N 308 PHE HB3 H N N 309 PHE HD1 H N N 310 PHE HD2 H N N 311 PHE HE1 H N N 312 PHE HE2 H N N 313 PHE HZ H N N 314 PHE HXT H N N 315 PRO N N N N 316 PRO CA C N S 317 PRO C C N N 318 PRO O O N N 319 PRO CB C N N 320 PRO CG C N N 321 PRO CD C N N 322 PRO OXT O N N 323 PRO H H N N 324 PRO HA H N N 325 PRO HB2 H N N 326 PRO HB3 H N N 327 PRO HG2 H N N 328 PRO HG3 H N N 329 PRO HD2 H N N 330 PRO HD3 H N N 331 PRO HXT H N N 332 SER N N N N 333 SER CA C N S 334 SER C C N N 335 SER O O N N 336 SER CB C N N 337 SER OG O N N 338 SER OXT O N N 339 SER H H N N 340 SER H2 H N N 341 SER HA H N N 342 SER HB2 H N N 343 SER HB3 H N N 344 SER HG H N N 345 SER HXT H N N 346 THR N N N N 347 THR CA C N S 348 THR C C N N 349 THR O O N N 350 THR CB C N R 351 THR OG1 O N N 352 THR CG2 C N N 353 THR OXT O N N 354 THR H H N N 355 THR H2 H N N 356 THR HA H N N 357 THR HB H N N 358 THR HG1 H N N 359 THR HG21 H N N 360 THR HG22 H N N 361 THR HG23 H N N 362 THR HXT H N N 363 TYR N N N N 364 TYR CA C N S 365 TYR C C N N 366 TYR O O N N 367 TYR CB C N N 368 TYR CG C Y N 369 TYR CD1 C Y N 370 TYR CD2 C Y N 371 TYR CE1 C Y N 372 TYR CE2 C Y N 373 TYR CZ C Y N 374 TYR OH O N N 375 TYR OXT O N N 376 TYR H H N N 377 TYR H2 H N N 378 TYR HA H N N 379 TYR HB2 H N N 380 TYR HB3 H N N 381 TYR HD1 H N N 382 TYR HD2 H N N 383 TYR HE1 H N N 384 TYR HE2 H N N 385 TYR HH H N N 386 TYR HXT H N N 387 VAL N N N N 388 VAL CA C N S 389 VAL C C N N 390 VAL O O N N 391 VAL CB C N N 392 VAL CG1 C N N 393 VAL CG2 C N N 394 VAL OXT O N N 395 VAL H H N N 396 VAL H2 H N N 397 VAL HA H N N 398 VAL HB H N N 399 VAL HG11 H N N 400 VAL HG12 H N N 401 VAL HG13 H N N 402 VAL HG21 H N N 403 VAL HG22 H N N 404 VAL HG23 H N N 405 VAL HXT H N N 406 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 D5M "O5'" "C5'" sing N N 70 D5M "O5'" P sing N N 71 D5M "C5'" "C4'" sing N N 72 D5M "C5'" "H5'1" sing N N 73 D5M "C5'" "H5'2" sing N N 74 D5M "C4'" "O4'" sing N N 75 D5M "C4'" "C3'" sing N N 76 D5M "C4'" "H4'" sing N N 77 D5M "O4'" "C1'" sing N N 78 D5M "C3'" "O3'" sing N N 79 D5M "C3'" "C2'" sing N N 80 D5M "C3'" H1 sing N N 81 D5M "O3'" "H3'" sing N N 82 D5M "C2'" "C1'" sing N N 83 D5M "C2'" "H2'1" sing N N 84 D5M "C2'" "H2'2" sing N N 85 D5M "C1'" N9 sing N N 86 D5M "C1'" "H1'" sing N N 87 D5M N9 C8 sing Y N 88 D5M N9 C4 sing Y N 89 D5M C8 N7 doub Y N 90 D5M C8 H8 sing N N 91 D5M N7 C5 sing Y N 92 D5M C5 C6 sing Y N 93 D5M C5 C4 doub Y N 94 D5M C6 N6 sing N N 95 D5M C6 N1 doub Y N 96 D5M N6 HN61 sing N N 97 D5M N6 HN62 sing N N 98 D5M N1 C2 sing Y N 99 D5M C2 N3 doub Y N 100 D5M C2 H2 sing N N 101 D5M N3 C4 sing Y N 102 D5M P O1P doub N N 103 D5M P O3P sing N N 104 D5M P O2P sing N N 105 D5M O3P H3P sing N N 106 D5M O2P H2P sing N N 107 DMS S O doub N N 108 DMS S C1 sing N N 109 DMS S C2 sing N N 110 DMS C1 H11 sing N N 111 DMS C1 H12 sing N N 112 DMS C1 H13 sing N N 113 DMS C2 H21 sing N N 114 DMS C2 H22 sing N N 115 DMS C2 H23 sing N N 116 EDO C1 O1 sing N N 117 EDO C1 C2 sing N N 118 EDO C1 H11 sing N N 119 EDO C1 H12 sing N N 120 EDO O1 HO1 sing N N 121 EDO C2 O2 sing N N 122 EDO C2 H21 sing N N 123 EDO C2 H22 sing N N 124 EDO O2 HO2 sing N N 125 GLN N CA sing N N 126 GLN N H sing N N 127 GLN N H2 sing N N 128 GLN CA C sing N N 129 GLN CA CB sing N N 130 GLN CA HA sing N N 131 GLN C O doub N N 132 GLN C OXT sing N N 133 GLN CB CG sing N N 134 GLN CB HB2 sing N N 135 GLN CB HB3 sing N N 136 GLN CG CD sing N N 137 GLN CG HG2 sing N N 138 GLN CG HG3 sing N N 139 GLN CD OE1 doub N N 140 GLN CD NE2 sing N N 141 GLN NE2 HE21 sing N N 142 GLN NE2 HE22 sing N N 143 GLN OXT HXT sing N N 144 GLU N CA sing N N 145 GLU N H sing N N 146 GLU N H2 sing N N 147 GLU CA C sing N N 148 GLU CA CB sing N N 149 GLU CA HA sing N N 150 GLU C O doub N N 151 GLU C OXT sing N N 152 GLU CB CG sing N N 153 GLU CB HB2 sing N N 154 GLU CB HB3 sing N N 155 GLU CG CD sing N N 156 GLU CG HG2 sing N N 157 GLU CG HG3 sing N N 158 GLU CD OE1 doub N N 159 GLU CD OE2 sing N N 160 GLU OE2 HE2 sing N N 161 GLU OXT HXT sing N N 162 GLY N CA sing N N 163 GLY N H sing N N 164 GLY N H2 sing N N 165 GLY CA C sing N N 166 GLY CA HA2 sing N N 167 GLY CA HA3 sing N N 168 GLY C O doub N N 169 GLY C OXT sing N N 170 GLY OXT HXT sing N N 171 HIS N CA sing N N 172 HIS N H sing N N 173 HIS N H2 sing N N 174 HIS CA C sing N N 175 HIS CA CB sing N N 176 HIS CA HA sing N N 177 HIS C O doub N N 178 HIS C OXT sing N N 179 HIS CB CG sing N N 180 HIS CB HB2 sing N N 181 HIS CB HB3 sing N N 182 HIS CG ND1 sing Y N 183 HIS CG CD2 doub Y N 184 HIS ND1 CE1 doub Y N 185 HIS ND1 HD1 sing N N 186 HIS CD2 NE2 sing Y N 187 HIS CD2 HD2 sing N N 188 HIS CE1 NE2 sing Y N 189 HIS CE1 HE1 sing N N 190 HIS NE2 HE2 sing N N 191 HIS OXT HXT sing N N 192 HOH O H1 sing N N 193 HOH O H2 sing N N 194 ILE N CA sing N N 195 ILE N H sing N N 196 ILE N H2 sing N N 197 ILE CA C sing N N 198 ILE CA CB sing N N 199 ILE CA HA sing N N 200 ILE C O doub N N 201 ILE C OXT sing N N 202 ILE CB CG1 sing N N 203 ILE CB CG2 sing N N 204 ILE CB HB sing N N 205 ILE CG1 CD1 sing N N 206 ILE CG1 HG12 sing N N 207 ILE CG1 HG13 sing N N 208 ILE CG2 HG21 sing N N 209 ILE CG2 HG22 sing N N 210 ILE CG2 HG23 sing N N 211 ILE CD1 HD11 sing N N 212 ILE CD1 HD12 sing N N 213 ILE CD1 HD13 sing N N 214 ILE OXT HXT sing N N 215 LEU N CA sing N N 216 LEU N H sing N N 217 LEU N H2 sing N N 218 LEU CA C sing N N 219 LEU CA CB sing N N 220 LEU CA HA sing N N 221 LEU C O doub N N 222 LEU C OXT sing N N 223 LEU CB CG sing N N 224 LEU CB HB2 sing N N 225 LEU CB HB3 sing N N 226 LEU CG CD1 sing N N 227 LEU CG CD2 sing N N 228 LEU CG HG sing N N 229 LEU CD1 HD11 sing N N 230 LEU CD1 HD12 sing N N 231 LEU CD1 HD13 sing N N 232 LEU CD2 HD21 sing N N 233 LEU CD2 HD22 sing N N 234 LEU CD2 HD23 sing N N 235 LEU OXT HXT sing N N 236 LYS N CA sing N N 237 LYS N H sing N N 238 LYS N H2 sing N N 239 LYS CA C sing N N 240 LYS CA CB sing N N 241 LYS CA HA sing N N 242 LYS C O doub N N 243 LYS C OXT sing N N 244 LYS CB CG sing N N 245 LYS CB HB2 sing N N 246 LYS CB HB3 sing N N 247 LYS CG CD sing N N 248 LYS CG HG2 sing N N 249 LYS CG HG3 sing N N 250 LYS CD CE sing N N 251 LYS CD HD2 sing N N 252 LYS CD HD3 sing N N 253 LYS CE NZ sing N N 254 LYS CE HE2 sing N N 255 LYS CE HE3 sing N N 256 LYS NZ HZ1 sing N N 257 LYS NZ HZ2 sing N N 258 LYS NZ HZ3 sing N N 259 LYS OXT HXT sing N N 260 MET N CA sing N N 261 MET N H sing N N 262 MET N H2 sing N N 263 MET CA C sing N N 264 MET CA CB sing N N 265 MET CA HA sing N N 266 MET C O doub N N 267 MET C OXT sing N N 268 MET CB CG sing N N 269 MET CB HB2 sing N N 270 MET CB HB3 sing N N 271 MET CG SD sing N N 272 MET CG HG2 sing N N 273 MET CG HG3 sing N N 274 MET SD CE sing N N 275 MET CE HE1 sing N N 276 MET CE HE2 sing N N 277 MET CE HE3 sing N N 278 MET OXT HXT sing N N 279 PHE N CA sing N N 280 PHE N H sing N N 281 PHE N H2 sing N N 282 PHE CA C sing N N 283 PHE CA CB sing N N 284 PHE CA HA sing N N 285 PHE C O doub N N 286 PHE C OXT sing N N 287 PHE CB CG sing N N 288 PHE CB HB2 sing N N 289 PHE CB HB3 sing N N 290 PHE CG CD1 doub Y N 291 PHE CG CD2 sing Y N 292 PHE CD1 CE1 sing Y N 293 PHE CD1 HD1 sing N N 294 PHE CD2 CE2 doub Y N 295 PHE CD2 HD2 sing N N 296 PHE CE1 CZ doub Y N 297 PHE CE1 HE1 sing N N 298 PHE CE2 CZ sing Y N 299 PHE CE2 HE2 sing N N 300 PHE CZ HZ sing N N 301 PHE OXT HXT sing N N 302 PRO N CA sing N N 303 PRO N CD sing N N 304 PRO N H sing N N 305 PRO CA C sing N N 306 PRO CA CB sing N N 307 PRO CA HA sing N N 308 PRO C O doub N N 309 PRO C OXT sing N N 310 PRO CB CG sing N N 311 PRO CB HB2 sing N N 312 PRO CB HB3 sing N N 313 PRO CG CD sing N N 314 PRO CG HG2 sing N N 315 PRO CG HG3 sing N N 316 PRO CD HD2 sing N N 317 PRO CD HD3 sing N N 318 PRO OXT HXT sing N N 319 SER N CA sing N N 320 SER N H sing N N 321 SER N H2 sing N N 322 SER CA C sing N N 323 SER CA CB sing N N 324 SER CA HA sing N N 325 SER C O doub N N 326 SER C OXT sing N N 327 SER CB OG sing N N 328 SER CB HB2 sing N N 329 SER CB HB3 sing N N 330 SER OG HG sing N N 331 SER OXT HXT sing N N 332 THR N CA sing N N 333 THR N H sing N N 334 THR N H2 sing N N 335 THR CA C sing N N 336 THR CA CB sing N N 337 THR CA HA sing N N 338 THR C O doub N N 339 THR C OXT sing N N 340 THR CB OG1 sing N N 341 THR CB CG2 sing N N 342 THR CB HB sing N N 343 THR OG1 HG1 sing N N 344 THR CG2 HG21 sing N N 345 THR CG2 HG22 sing N N 346 THR CG2 HG23 sing N N 347 THR OXT HXT sing N N 348 TYR N CA sing N N 349 TYR N H sing N N 350 TYR N H2 sing N N 351 TYR CA C sing N N 352 TYR CA CB sing N N 353 TYR CA HA sing N N 354 TYR C O doub N N 355 TYR C OXT sing N N 356 TYR CB CG sing N N 357 TYR CB HB2 sing N N 358 TYR CB HB3 sing N N 359 TYR CG CD1 doub Y N 360 TYR CG CD2 sing Y N 361 TYR CD1 CE1 sing Y N 362 TYR CD1 HD1 sing N N 363 TYR CD2 CE2 doub Y N 364 TYR CD2 HD2 sing N N 365 TYR CE1 CZ doub Y N 366 TYR CE1 HE1 sing N N 367 TYR CE2 CZ sing Y N 368 TYR CE2 HE2 sing N N 369 TYR CZ OH sing N N 370 TYR OH HH sing N N 371 TYR OXT HXT sing N N 372 VAL N CA sing N N 373 VAL N H sing N N 374 VAL N H2 sing N N 375 VAL CA C sing N N 376 VAL CA CB sing N N 377 VAL CA HA sing N N 378 VAL C O doub N N 379 VAL C OXT sing N N 380 VAL CB CG1 sing N N 381 VAL CB CG2 sing N N 382 VAL CB HB sing N N 383 VAL CG1 HG11 sing N N 384 VAL CG1 HG12 sing N N 385 VAL CG1 HG13 sing N N 386 VAL CG2 HG21 sing N N 387 VAL CG2 HG22 sing N N 388 VAL CG2 HG23 sing N N 389 VAL OXT HXT sing N N 390 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4DUT _pdbx_initial_refinement_model.details 'PDB ENTRY 4DUT' # _atom_sites.entry_id 4EK2 _atom_sites.fract_transf_matrix[1][1] 0.011028 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011028 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011058 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O P S # loop_