HEADER HYDROLASE 09-APR-12 4EKF TITLE STRUCTURE OF THE INACTIVE ADENOVIRUS PROTEINASE AT 0.98 ANGSTROM TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ENDOPROTEASE, LATE L3 23 KDA PROTEIN; COMPND 5 EC: 3.4.22.39; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ADENOVIRUS 2; SOURCE 3 ORGANISM_TAXID: 10515; SOURCE 4 STRAIN: SEROTYPE 2; SOURCE 5 GENE: L3-23K; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) PLYS S; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET 13A KEYWDS ALPHA AND BETA PROTEIN (A+B), HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.L.BANIECKI,W.J.MCGRATH,W.F.MANGEL REVDAT 6 13-SEP-23 4EKF 1 REMARK LINK REVDAT 5 15-NOV-17 4EKF 1 REMARK REVDAT 4 06-FEB-13 4EKF 1 JRNL REVDAT 3 12-DEC-12 4EKF 1 JRNL REVDAT 2 24-OCT-12 4EKF 1 JRNL REMARK REVDAT 1 10-OCT-12 4EKF 0 JRNL AUTH M.L.BANIECKI,W.J.MCGRATH,W.F.MANGEL JRNL TITL REGULATION OF A VIRAL PROTEINASE BY A PEPTIDE AND DNA IN JRNL TITL 2 ONE-DIMENSIONAL SPACE: III. ATOMIC RESOLUTION STRUCTURE OF JRNL TITL 3 THE NASCENT FORM OF THE ADENOVIRUS PROTEINASE. JRNL REF J.BIOL.CHEM. V. 288 2081 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23043139 JRNL DOI 10.1074/JBC.M112.407429 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH V.GRAZIANO,W.J.MCGRATH,M.SUOMALAINEN,U.F.GREBER,P.FREIMUTH, REMARK 1 AUTH 2 P.C.BLAINEY,G.LUO,X.S.XIE,W.F.MANGEL REMARK 1 TITL REGULATION OF A VIRAL PROTEINASE BY A PEPTIDE AND DNA IN REMARK 1 TITL 2 ONE-DIMENSIONAL SPACE. I. BINDING TO DNA AND TO HEXON OF THE REMARK 1 TITL 3 PRECURSOR TO PROTEIN VI, PVI, OF HUMAN ADENOVIRUS. REMARK 1 REF J.BIOL.CHEM. 2012 REMARK 1 REFN ESSN 1083-351X REMARK 1 PMID 23043136 REMARK 1 DOI 10.1074/JBC.M112.377150 REMARK 1 REFERENCE 2 REMARK 1 AUTH V.GRAZIANO,G.LUO,P.C.BLAINEY,A.J.PEREZ-BERNA,W.J.MCGRATH, REMARK 1 AUTH 2 S.J.FLINT,C.SAN MARTIN,X.S.XIE,W.F.MANGEL REMARK 1 TITL REGULATION OF A VIRAL PROTEINASE BY A PEPTIDE AND DNA IN REMARK 1 TITL 2 ONE-DIMENSIONAL SPACE. II. ADENOVIRUS PROTEINASE IS REMARK 1 TITL 3 ACTIVATED IN AN UNUSUAL ONE-DIMENSIONAL BIOCHEMICAL REMARK 1 TITL 4 REACTION. REMARK 1 REF J.BIOL.CHEM. V. 58 1462 2012 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 23043137 REMARK 1 DOI 10.1074/JBC.M112.407312 REMARK 1 REFERENCE 3 REMARK 1 AUTH P.C.BLAINEY,V.GRAZIANO,A.J.PEREZ-BERNA,W.J.MCGRATH, REMARK 1 AUTH 2 S.J.FLINT,C.SAN MARTIN,X.S.XIE,W.F.MANGEL REMARK 1 TITL REGULATION OF A VIRAL PROTEINASE BY A PEPTIDE AND DNA IN REMARK 1 TITL 2 ONE-DIMENSIONAL SPACE. IV. VIRAL PROTEINASE SLIDES ALONG DNA REMARK 1 TITL 3 TO LOCATE AND PROCESS ITS SUBSTRATES. REMARK 1 REF J.BIOL.CHEM. V. 15 1778 2012 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 23043138 REMARK 1 DOI 10.1074/JBC.M112.407460 REMARK 1 REFERENCE 4 REMARK 1 AUTH M.L.BANIECKI,W.J.MCGRATH,Z.DAUTER,W.F.MANGEL REMARK 1 TITL ADENOVIRUS PROTEINASE: CRYSTALLIZATION AND PRELIMINARY X-RAY REMARK 1 TITL 2 DIFFRACTION STUDIES TO ATOMIC RESOLUTION. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 58 1462 2002 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 12198302 REMARK 1 DOI 10.1107/S0907444902008429 REMARK 1 REFERENCE 5 REMARK 1 AUTH J.DING,W.J.MCGRATH,R.M.SWEET,W.F.MANGEL REMARK 1 TITL CRYSTAL STRUCTURE OF THE HUMAN ADENOVIRUS PROTEINASE WITH REMARK 1 TITL 2 ITS 11 AMINO ACID COFACTOR. REMARK 1 REF EMBO J. V. 15 1778 1996 REMARK 1 REFN ISSN 0261-4189 REMARK 1 PMID 8617222 REMARK 1 DOI 10.1107/S0907444902008429 REMARK 1 REFERENCE 6 REMARK 1 AUTH W.J.MCGRATH,J.DING,A.DIDWANIA,R.M.SWEET,W.F.MANGEL REMARK 1 TITL CRYSTALLOGRAPHIC STRUCTURE AT 1.6-A RESOLUTION OF THE HUMAN REMARK 1 TITL 2 ADENOVIRUS PROTEINASE IN A COVALENT COMPLEX WITH ITS REMARK 1 TITL 3 11-AMINO-ACID PEPTIDE COFACTOR: INSIGHTS ON A NEW FOLD. REMARK 1 REF BIOCHIM.BIOPHYS.ACTA V.1648 1 2003 REMARK 1 REFN ISSN 0006-3002 REMARK 1 PMID 12758141 REMARK 1 REFERENCE 7 REMARK 1 AUTH W.F.MANGEL,W.J.MCGRATH,D.L.TOLEDO,C.W.ANDERSON REMARK 1 TITL VIRAL DNA AND A VIRAL PEPTIDE CAN ACT AS COFACTORS OF REMARK 1 TITL 2 ADENOVIRUS VIRION PROTEINASE ACTIVITY. REMARK 1 REF NATURE V. 361 274 1993 REMARK 1 REFN ISSN 0028-0836 REMARK 1 PMID 8423855 REMARK 1 DOI 10.1038/361274A0 REMARK 2 REMARK 2 RESOLUTION. 0.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELX REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.135 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.135 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 90549 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.124 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.159 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 73796 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1535 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 258 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 1732.9 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 1406.0 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 12 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 16135 REMARK 3 NUMBER OF RESTRAINTS : 19747 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.029 REMARK 3 ANGLE DISTANCES (A) : 0.045 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.028 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.093 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.172 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.119 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.006 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.046 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.079 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ANISOTROPIC REFINEMENT REDUCED FREE R REMARK 3 (NO CUTOFF) BY ? REMARK 4 REMARK 4 4EKF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000071729. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRANDEIS 4K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 92231 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.980 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.59400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1NLN CHAIN A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 29.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3M SODIUM CITRATE, PH 5.6, 0.8 M REMARK 280 SODIUM ACETATE, 5 MM DTT, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K, PH 5.60 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.27000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 48 REMARK 465 GLU A 49 REMARK 465 THR A 50 REMARK 465 GLY A 51 REMARK 465 ILE A 97 REMARK 465 ALA A 98 REMARK 465 SER A 99 REMARK 465 SER A 100 REMARK 465 PRO A 101 REMARK 465 ASP A 102 REMARK 465 ARG A 103 REMARK 465 CYS A 104 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 7 CG REMARK 480 ASP A 26 OD1 REMARK 480 LYS A 27 NZ REMARK 480 ALA A 96 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 29 C PRO A 30 N 0.117 REMARK 500 ASN A 159 CG ASN A 159 ND2 -0.157 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 29 CB - CG - CD2 ANGL. DEV. = -4.9 DEGREES REMARK 500 PHE A 29 CB - CG - CD1 ANGL. DEV. = 4.3 DEGREES REMARK 500 PHE A 29 O - C - N ANGL. DEV. = 14.7 DEGREES REMARK 500 PHE A 32 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 MET A 56 CA - CB - CG ANGL. DEV. = 12.3 DEGREES REMARK 500 ARG A 63 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 63 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 79 NH1 - CZ - NH2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ARG A 79 NE - CZ - NH1 ANGL. DEV. = 8.1 DEGREES REMARK 500 ARG A 168 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 168 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 169 CD - NE - CZ ANGL. DEV. = 8.6 DEGREES REMARK 500 ARG A 169 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 186 NH1 - CZ - NH2 ANGL. DEV. = 7.6 DEGREES REMARK 500 ARG A 186 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 HIS A 200 CG - ND1 - CE1 ANGL. DEV. = 6.8 DEGREES REMARK 500 LYS A 202 CA - CB - CG ANGL. DEV. = 17.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 27 -48.73 68.05 REMARK 500 HIS A 54 54.95 80.37 REMARK 500 THR A 139 61.79 -154.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 147 O REMARK 620 2 ILE A 150 O 83.5 REMARK 620 3 HOH A1036 O 81.8 155.4 REMARK 620 4 HOH A1038 O 96.3 120.7 80.7 REMARK 620 5 HOH A1069 O 116.2 73.6 95.5 146.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NLN RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH ITS 11 AMINO ACID PEPTIDE COFACTOR, REMARK 900 PVIC DBREF 4EKF A 1 204 UNP P03252 ADEN_ADE02 1 204 SEQRES 1 A 204 MET GLY SER SER GLU GLN GLU LEU LYS ALA ILE VAL LYS SEQRES 2 A 204 ASP LEU GLY CYS GLY PRO TYR PHE LEU GLY THR TYR ASP SEQRES 3 A 204 LYS ARG PHE PRO GLY PHE VAL SER PRO HIS LYS LEU ALA SEQRES 4 A 204 CYS ALA ILE VAL ASN THR ALA GLY ARG GLU THR GLY GLY SEQRES 5 A 204 VAL HIS TRP MET ALA PHE ALA TRP ASN PRO ARG SER LYS SEQRES 6 A 204 THR CYS TYR LEU PHE GLU PRO PHE GLY PHE SER ASP GLN SEQRES 7 A 204 ARG LEU LYS GLN VAL TYR GLN PHE GLU TYR GLU SER LEU SEQRES 8 A 204 LEU ARG ARG SER ALA ILE ALA SER SER PRO ASP ARG CYS SEQRES 9 A 204 ILE THR LEU GLU LYS SER THR GLN SER VAL GLN GLY PRO SEQRES 10 A 204 ASN SER ALA ALA CSD GLY LEU PHE CYS CYS MET PHE LEU SEQRES 11 A 204 HIS ALA PHE ALA ASN TRP PRO GLN THR PRO MET ASP HIS SEQRES 12 A 204 ASN PRO THR MET ASN LEU ILE THR GLY VAL PRO ASN SER SEQRES 13 A 204 MET LEU ASN SER PRO GLN VAL GLN PRO THR LEU ARG ARG SEQRES 14 A 204 ASN GLN GLU GLN LEU TYR SER PHE LEU GLU ARG HIS SER SEQRES 15 A 204 PRO TYR PHE ARG SER HIS SER ALA GLN ILE ARG SER ALA SEQRES 16 A 204 THR SER PHE CYS HIS LEU LYS ASN MET MODRES 4EKF CSD A 122 CYS 3-SULFINOALANINE HET CSD A 122 12 HET NA A 301 1 HETNAM CSD 3-SULFINOALANINE HETNAM NA SODIUM ION HETSYN CSD S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE FORMUL 1 CSD C3 H7 N O4 S FORMUL 2 NA NA 1+ FORMUL 3 HOH *258(H2 O) HELIX 1 1 SER A 4 LEU A 15 1 12 HELIX 2 2 CYS A 17 PRO A 19 5 3 HELIX 3 3 ASP A 77 ALA A 96 1 20 HELIX 4 4 ALA A 121 TRP A 136 1 16 HELIX 5 5 THR A 146 ILE A 150 5 5 HELIX 6 6 PRO A 154 LEU A 158 5 5 HELIX 7 7 SER A 160 GLN A 162 5 3 HELIX 8 8 VAL A 163 SER A 182 1 20 HELIX 9 9 SER A 182 HIS A 188 1 7 HELIX 10 10 HIS A 188 THR A 196 1 9 SHEET 1 A 5 PHE A 21 ASP A 26 0 SHEET 2 A 5 ALA A 39 ASN A 44 1 O CYS A 40 N LEU A 22 SHEET 3 A 5 TRP A 55 ASN A 61 -1 O MET A 56 N VAL A 43 SHEET 4 A 5 THR A 66 PHE A 70 -1 O TYR A 68 N ALA A 59 SHEET 5 A 5 THR A 106 LYS A 109 1 O GLU A 108 N CYS A 67 LINK C ALA A 121 N CSD A 122 1555 1555 1.35 LINK C CSD A 122 N GLY A 123 1555 1555 1.32 LINK O MET A 147 NA NA A 301 1555 1555 2.40 LINK O ILE A 150 NA NA A 301 1555 1555 2.29 LINK NA NA A 301 O HOH A1036 1555 1555 2.28 LINK NA NA A 301 O HOH A1038 1555 1555 2.41 LINK NA NA A 301 O HOH A1069 1555 1555 2.47 SITE 1 AC1 5 MET A 147 ILE A 150 HOH A1036 HOH A1038 SITE 2 AC1 5 HOH A1069 CRYST1 36.270 54.540 42.410 90.00 100.10 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027571 0.000000 0.004911 0.00000 SCALE2 0.000000 0.018335 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023951 0.00000