HEADER MEMBRANE PROTEIN 12-APR-12 4EMT TITLE CRYSTAL STRUCTURE OF HUMAN STING BOUND TO C-DI-GMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSMEMBRANE PROTEIN 173; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 155 - 341; COMPND 5 SYNONYM: ENDOPLASMIC RETICULUM INTERFERON STIMULATOR, ERIS, MEDIATOR COMPND 6 OF IRF3 ACTIVATION, HMITA, STIMULATOR OF INTERFERON GENES PROTEIN, COMPND 7 HSTING; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TMEM173, ERIS, MITA, STING; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA/BETA FOLD, INNATE IMMUNE SENSOR, C-DI-GMP, C-DI-AMP, MEMBRANE KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.LI REVDAT 5 06-NOV-24 4EMT 1 REMARK SEQADV HETSYN LINK REVDAT 4 25-JUL-12 4EMT 1 JRNL REVDAT 3 11-JUL-12 4EMT 1 JRNL REVDAT 2 27-JUN-12 4EMT 1 REVDAT 1 13-JUN-12 4EMT 0 JRNL AUTH C.SHU,G.YI,T.WATTS,C.C.KAO,P.LI JRNL TITL STRUCTURE OF STING BOUND TO CYCLIC DI-GMP REVEALS THE JRNL TITL 2 MECHANISM OF CYCLIC DINUCLEOTIDE RECOGNITION BY THE IMMUNE JRNL TITL 3 SYSTEM. JRNL REF NAT.STRUCT.MOL.BIOL. V. 19 722 2012 JRNL REFN ISSN 1545-9993 JRNL PMID 22728658 JRNL DOI 10.1038/NSMB.2331 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 54811 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.650 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.2741 - 3.6144 0.99 4043 154 0.1790 0.2062 REMARK 3 2 3.6144 - 2.8690 0.99 3911 148 0.1761 0.1961 REMARK 3 3 2.8690 - 2.5063 1.00 3896 147 0.1906 0.2175 REMARK 3 4 2.5063 - 2.2772 1.00 3884 147 0.1807 0.2080 REMARK 3 5 2.2772 - 2.1140 1.00 3867 146 0.1772 0.1746 REMARK 3 6 2.1140 - 1.9893 1.00 3901 148 0.1816 0.2075 REMARK 3 7 1.9893 - 1.8897 1.00 3846 146 0.1886 0.2091 REMARK 3 8 1.8897 - 1.8074 1.00 3825 144 0.1895 0.1972 REMARK 3 9 1.8074 - 1.7379 1.00 3853 146 0.1940 0.2337 REMARK 3 10 1.7379 - 1.6779 1.00 3864 147 0.2104 0.2235 REMARK 3 11 1.6779 - 1.6254 0.99 3794 144 0.2242 0.2561 REMARK 3 12 1.6254 - 1.5790 0.96 3704 140 0.2518 0.3004 REMARK 3 13 1.5790 - 1.5374 0.88 3373 127 0.2851 0.3164 REMARK 3 14 1.5374 - 1.5000 0.79 3050 116 0.3059 0.3270 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 45.62 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 12.80600 REMARK 3 B22 (A**2) : -4.24500 REMARK 3 B33 (A**2) : -8.56100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2937 REMARK 3 ANGLE : 1.081 3994 REMARK 3 CHIRALITY : 0.076 437 REMARK 3 PLANARITY : 0.005 520 REMARK 3 DIHEDRAL : 15.039 1102 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 154:211) REMARK 3 ORIGIN FOR THE GROUP (A): 55.7170 20.2122 60.8383 REMARK 3 T TENSOR REMARK 3 T11: 0.2100 T22: 0.2674 REMARK 3 T33: 0.1898 T12: 0.0423 REMARK 3 T13: -0.0077 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: -0.0048 L22: 1.1369 REMARK 3 L33: 1.2332 L12: 0.5550 REMARK 3 L13: 0.3739 L23: 0.0301 REMARK 3 S TENSOR REMARK 3 S11: -0.0447 S12: 0.0124 S13: -0.0671 REMARK 3 S21: -0.1851 S22: 0.0983 S23: -0.0493 REMARK 3 S31: 0.0619 S32: 0.2656 S33: 0.0039 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 212:251) REMARK 3 ORIGIN FOR THE GROUP (A): 48.0052 17.5724 55.1236 REMARK 3 T TENSOR REMARK 3 T11: 0.3297 T22: 0.2859 REMARK 3 T33: 0.2210 T12: 0.0087 REMARK 3 T13: -0.0288 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 0.3333 L22: 0.3208 REMARK 3 L33: 0.3762 L12: 0.3691 REMARK 3 L13: 0.0167 L23: 0.0055 REMARK 3 S TENSOR REMARK 3 S11: 0.0389 S12: -0.0595 S13: -0.1008 REMARK 3 S21: 0.1743 S22: 0.0874 S23: 0.0460 REMARK 3 S31: 0.0857 S32: -0.2022 S33: -0.0002 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 252:314) REMARK 3 ORIGIN FOR THE GROUP (A): 49.3721 28.5563 69.1302 REMARK 3 T TENSOR REMARK 3 T11: 0.2163 T22: 0.2278 REMARK 3 T33: 0.2021 T12: 0.0056 REMARK 3 T13: -0.0061 T23: 0.0419 REMARK 3 L TENSOR REMARK 3 L11: 0.4762 L22: 0.4464 REMARK 3 L33: 2.1916 L12: 0.0314 REMARK 3 L13: 1.1718 L23: -0.9232 REMARK 3 S TENSOR REMARK 3 S11: 0.0123 S12: 0.0305 S13: -0.0675 REMARK 3 S21: 0.0970 S22: 0.0222 S23: 0.0184 REMARK 3 S31: -0.2618 S32: 0.0848 S33: 0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 315:337) REMARK 3 ORIGIN FOR THE GROUP (A): 46.0146 33.7996 54.6766 REMARK 3 T TENSOR REMARK 3 T11: 0.4945 T22: 0.2822 REMARK 3 T33: 0.1489 T12: 0.0543 REMARK 3 T13: -0.0927 T23: 0.0409 REMARK 3 L TENSOR REMARK 3 L11: 1.1436 L22: 0.6694 REMARK 3 L33: 0.1870 L12: 0.8346 REMARK 3 L13: -0.0359 L23: -0.0605 REMARK 3 S TENSOR REMARK 3 S11: -0.5065 S12: 0.1936 S13: -0.2670 REMARK 3 S21: 0.0290 S22: 0.1429 S23: -0.1356 REMARK 3 S31: -0.8030 S32: -0.0627 S33: -0.1057 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 154:185) REMARK 3 ORIGIN FOR THE GROUP (A): 43.7960 9.9649 84.7114 REMARK 3 T TENSOR REMARK 3 T11: 0.1329 T22: 0.1978 REMARK 3 T33: 0.2505 T12: -0.0326 REMARK 3 T13: -0.0837 T23: 0.0627 REMARK 3 L TENSOR REMARK 3 L11: 0.9750 L22: 0.9756 REMARK 3 L33: 1.3921 L12: -0.9055 REMARK 3 L13: -0.0015 L23: -0.2905 REMARK 3 S TENSOR REMARK 3 S11: 0.0465 S12: -0.0388 S13: -0.1843 REMARK 3 S21: -0.0188 S22: 0.1612 S23: 0.2848 REMARK 3 S31: 0.0661 S32: -0.2257 S33: 0.8419 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 186:197) REMARK 3 ORIGIN FOR THE GROUP (A): 45.6666 -7.7705 91.0154 REMARK 3 T TENSOR REMARK 3 T11: 0.4593 T22: 0.2376 REMARK 3 T33: 0.3209 T12: -0.0236 REMARK 3 T13: -0.0773 T23: 0.0747 REMARK 3 L TENSOR REMARK 3 L11: 1.0190 L22: 0.7929 REMARK 3 L33: 0.0752 L12: -0.4484 REMARK 3 L13: -0.1281 L23: -0.1732 REMARK 3 S TENSOR REMARK 3 S11: 0.1158 S12: 0.0895 S13: 0.2252 REMARK 3 S21: -0.4374 S22: 0.1785 S23: 0.6608 REMARK 3 S31: 0.6296 S32: -0.1382 S33: 0.1280 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 198:211) REMARK 3 ORIGIN FOR THE GROUP (A): 58.4215 10.9429 89.7954 REMARK 3 T TENSOR REMARK 3 T11: 0.1709 T22: 0.1794 REMARK 3 T33: 0.2044 T12: -0.0121 REMARK 3 T13: -0.0151 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.2994 L22: 0.0145 REMARK 3 L33: 0.2466 L12: 0.0705 REMARK 3 L13: 0.2661 L23: -0.0990 REMARK 3 S TENSOR REMARK 3 S11: -0.0901 S12: 0.2379 S13: -0.1287 REMARK 3 S21: 0.0487 S22: 0.1523 S23: -0.0708 REMARK 3 S31: 0.1887 S32: 0.1118 S33: 0.0018 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 212:224) REMARK 3 ORIGIN FOR THE GROUP (A): 59.9320 -1.9305 89.8580 REMARK 3 T TENSOR REMARK 3 T11: 0.3078 T22: 0.2371 REMARK 3 T33: 0.2728 T12: -0.0128 REMARK 3 T13: -0.0427 T23: -0.0239 REMARK 3 L TENSOR REMARK 3 L11: 0.0088 L22: 0.1412 REMARK 3 L33: 0.2179 L12: -0.0694 REMARK 3 L13: -0.0439 L23: 0.1059 REMARK 3 S TENSOR REMARK 3 S11: 0.0393 S12: 0.4412 S13: -0.1315 REMARK 3 S21: 0.1121 S22: 0.1621 S23: -0.2186 REMARK 3 S31: 0.4480 S32: 0.6102 S33: 0.0006 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 225:242) REMARK 3 ORIGIN FOR THE GROUP (A): 45.2047 3.4886 77.9545 REMARK 3 T TENSOR REMARK 3 T11: 0.5421 T22: 0.3710 REMARK 3 T33: 0.2632 T12: 0.0473 REMARK 3 T13: -0.1252 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 0.3283 L22: 0.2202 REMARK 3 L33: 0.5949 L12: 0.0534 REMARK 3 L13: 0.3468 L23: -0.2100 REMARK 3 S TENSOR REMARK 3 S11: 0.4250 S12: 0.6378 S13: -0.2988 REMARK 3 S21: -0.9200 S22: -0.0663 S23: -0.0172 REMARK 3 S31: -0.2666 S32: -0.4291 S33: 0.0439 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 243:314) REMARK 3 ORIGIN FOR THE GROUP (A): 55.2196 14.6939 90.3295 REMARK 3 T TENSOR REMARK 3 T11: 0.1458 T22: 0.1620 REMARK 3 T33: 0.1733 T12: -0.0134 REMARK 3 T13: -0.0109 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 1.0630 L22: 1.3705 REMARK 3 L33: 1.5942 L12: -0.6912 REMARK 3 L13: 0.8922 L23: -0.9949 REMARK 3 S TENSOR REMARK 3 S11: -0.0116 S12: 0.0044 S13: 0.0390 REMARK 3 S21: 0.1021 S22: 0.0374 S23: 0.1145 REMARK 3 S31: -0.0841 S32: 0.0002 S33: -0.0007 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 315:337) REMARK 3 ORIGIN FOR THE GROUP (A): 58.2544 7.3713 101.5398 REMARK 3 T TENSOR REMARK 3 T11: 0.2732 T22: 0.1947 REMARK 3 T33: 0.2079 T12: -0.0169 REMARK 3 T13: -0.0405 T23: 0.0209 REMARK 3 L TENSOR REMARK 3 L11: 0.0632 L22: 0.4383 REMARK 3 L33: 0.1523 L12: 0.0126 REMARK 3 L13: 0.0259 L23: 0.0033 REMARK 3 S TENSOR REMARK 3 S11: 0.1674 S12: -0.1509 S13: 0.0907 REMARK 3 S21: 0.0826 S22: -0.0560 S23: 0.0415 REMARK 3 S31: 0.0937 S32: 0.0920 S33: 0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4EMT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000071815. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 120.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9839 REMARK 200 MONOCHROMATOR : SI CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54857 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 48.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX 1.7_650 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG400, 0.2M CACL2, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.11100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.11100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.89850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.10750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.89850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.10750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.11100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.89850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 39.10750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 64.11100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.89850 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 39.10750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 139.59400 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 192.33300 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 631 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 228 REMARK 465 THR A 229 REMARK 465 GLY A 230 REMARK 465 ASP A 231 REMARK 465 HIS A 232 REMARK 465 ALA A 233 REMARK 465 GLY A 234 REMARK 465 ILE A 235 REMARK 465 LYS A 236 REMARK 465 LYS A 338 REMARK 465 GLU A 339 REMARK 465 GLU A 340 REMARK 465 VAL A 341 REMARK 465 GLN B 228 REMARK 465 THR B 229 REMARK 465 GLY B 230 REMARK 465 ASP B 231 REMARK 465 HIS B 232 REMARK 465 ALA B 233 REMARK 465 GLY B 234 REMARK 465 ILE B 235 REMARK 465 LYS B 236 REMARK 465 LYS B 338 REMARK 465 GLU B 339 REMARK 465 GLU B 340 REMARK 465 VAL B 341 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 633 O HOH B 646 1.83 REMARK 500 OE1 GLU B 246 O HOH B 632 1.89 REMARK 500 O HOH B 592 O HOH B 598 1.91 REMARK 500 O HOH B 654 O HOH B 658 1.99 REMARK 500 O HOH B 527 O HOH B 619 2.01 REMARK 500 O HOH A 542 O HOH A 563 2.08 REMARK 500 O HOH B 644 O HOH B 653 2.10 REMARK 500 O GLN B 227 O HOH B 611 2.14 REMARK 500 O HOH B 614 O HOH B 619 2.14 REMARK 500 OE2 GLU A 174 O HOH A 610 2.18 REMARK 500 OE1 GLN B 227 O HOH B 621 2.18 REMARK 500 O LEU A 333 O HOH A 593 2.19 REMARK 500 NE2 GLN A 335 O HOH A 606 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 613 O HOH A 613 4566 1.76 REMARK 500 O HOH A 611 O HOH B 629 4556 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 167 -66.38 -141.38 REMARK 500 ARG A 197 143.92 86.90 REMARK 500 TYR B 167 -68.69 -142.68 REMARK 500 ARG B 197 145.40 85.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 318 O REMARK 620 2 ASP B 320 OD1 85.8 REMARK 620 3 HOH B 558 O 76.5 87.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C2E A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EMU RELATED DB: PDB DBREF 4EMT A 155 341 UNP Q86WV6 TM173_HUMAN 155 341 DBREF 4EMT B 155 341 UNP Q86WV6 TM173_HUMAN 155 341 SEQADV 4EMT SER A 154 UNP Q86WV6 EXPRESSION TAG SEQADV 4EMT SER B 154 UNP Q86WV6 EXPRESSION TAG SEQRES 1 A 188 SER VAL ALA HIS GLY LEU ALA TRP SER TYR TYR ILE GLY SEQRES 2 A 188 TYR LEU ARG LEU ILE LEU PRO GLU LEU GLN ALA ARG ILE SEQRES 3 A 188 ARG THR TYR ASN GLN HIS TYR ASN ASN LEU LEU ARG GLY SEQRES 4 A 188 ALA VAL SER GLN ARG LEU TYR ILE LEU LEU PRO LEU ASP SEQRES 5 A 188 CYS GLY VAL PRO ASP ASN LEU SER MSE ALA ASP PRO ASN SEQRES 6 A 188 ILE ARG PHE LEU ASP LYS LEU PRO GLN GLN THR GLY ASP SEQRES 7 A 188 HIS ALA GLY ILE LYS ASP ARG VAL TYR SER ASN SER ILE SEQRES 8 A 188 TYR GLU LEU LEU GLU ASN GLY GLN ARG ALA GLY THR CYS SEQRES 9 A 188 VAL LEU GLU TYR ALA THR PRO LEU GLN THR LEU PHE ALA SEQRES 10 A 188 MSE SER GLN TYR SER GLN ALA GLY PHE SER ARG GLU ASP SEQRES 11 A 188 ARG LEU GLU GLN ALA LYS LEU PHE CYS ARG THR LEU GLU SEQRES 12 A 188 ASP ILE LEU ALA ASP ALA PRO GLU SER GLN ASN ASN CYS SEQRES 13 A 188 ARG LEU ILE ALA TYR GLN GLU PRO ALA ASP ASP SER SER SEQRES 14 A 188 PHE SER LEU SER GLN GLU VAL LEU ARG HIS LEU ARG GLN SEQRES 15 A 188 GLU GLU LYS GLU GLU VAL SEQRES 1 B 188 SER VAL ALA HIS GLY LEU ALA TRP SER TYR TYR ILE GLY SEQRES 2 B 188 TYR LEU ARG LEU ILE LEU PRO GLU LEU GLN ALA ARG ILE SEQRES 3 B 188 ARG THR TYR ASN GLN HIS TYR ASN ASN LEU LEU ARG GLY SEQRES 4 B 188 ALA VAL SER GLN ARG LEU TYR ILE LEU LEU PRO LEU ASP SEQRES 5 B 188 CYS GLY VAL PRO ASP ASN LEU SER MSE ALA ASP PRO ASN SEQRES 6 B 188 ILE ARG PHE LEU ASP LYS LEU PRO GLN GLN THR GLY ASP SEQRES 7 B 188 HIS ALA GLY ILE LYS ASP ARG VAL TYR SER ASN SER ILE SEQRES 8 B 188 TYR GLU LEU LEU GLU ASN GLY GLN ARG ALA GLY THR CYS SEQRES 9 B 188 VAL LEU GLU TYR ALA THR PRO LEU GLN THR LEU PHE ALA SEQRES 10 B 188 MSE SER GLN TYR SER GLN ALA GLY PHE SER ARG GLU ASP SEQRES 11 B 188 ARG LEU GLU GLN ALA LYS LEU PHE CYS ARG THR LEU GLU SEQRES 12 B 188 ASP ILE LEU ALA ASP ALA PRO GLU SER GLN ASN ASN CYS SEQRES 13 B 188 ARG LEU ILE ALA TYR GLN GLU PRO ALA ASP ASP SER SER SEQRES 14 B 188 PHE SER LEU SER GLN GLU VAL LEU ARG HIS LEU ARG GLN SEQRES 15 B 188 GLU GLU LYS GLU GLU VAL MODRES 4EMT MSE A 214 MET SELENOMETHIONINE MODRES 4EMT MSE A 271 MET SELENOMETHIONINE MODRES 4EMT MSE B 214 MET SELENOMETHIONINE MODRES 4EMT MSE B 271 MET SELENOMETHIONINE HET MSE A 214 8 HET MSE A 271 8 HET MSE B 214 8 HET MSE B 271 8 HET C2E A 401 46 HET CA B 401 1 HETNAM MSE SELENOMETHIONINE HETNAM C2E 9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10AS,12S,14AR)-3,5,10, HETNAM 2 C2E 12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3, HETNAM 3 C2E 2-D:3',2'-J][1,3,7,9,2, HETNAM 4 C2E 8]TETRAOXADIPHOSPHACYCLODODECINE-2,9-DIYL]BIS(2-AMINO- HETNAM 5 C2E 1,9-DIHYDRO-6H-PURIN-6-ONE) HETNAM CA CALCIUM ION HETSYN C2E C-DI-GMP; CYCLIC DIGUANOSINE MONOPHOSPHATE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 C2E C20 H24 N10 O14 P2 FORMUL 4 CA CA 2+ FORMUL 5 HOH *278(H2 O) HELIX 1 1 VAL A 155 TYR A 167 1 13 HELIX 2 2 TYR A 167 TYR A 186 1 20 HELIX 3 3 ASN A 211 ASP A 216 5 6 HELIX 4 4 THR A 263 GLN A 273 1 11 HELIX 5 5 TYR A 274 GLY A 278 5 5 HELIX 6 6 SER A 280 ALA A 302 1 23 HELIX 7 7 ALA A 302 ASN A 307 1 6 HELIX 8 8 SER A 324 ARG A 334 1 11 HELIX 9 9 VAL B 155 TYR B 167 1 13 HELIX 10 10 TYR B 167 TYR B 186 1 20 HELIX 11 11 ASN B 211 ASP B 216 1 6 HELIX 12 12 THR B 263 TYR B 274 1 12 HELIX 13 13 SER B 275 GLY B 278 5 4 HELIX 14 14 SER B 280 ASP B 301 1 22 HELIX 15 15 ALA B 302 ASN B 308 1 7 HELIX 16 16 ASP B 319 PHE B 323 5 5 HELIX 17 17 SER B 324 GLU B 336 1 13 SHEET 1 A 5 ILE A 219 LEU A 225 0 SHEET 2 A 5 ASN A 242 GLU A 249 -1 O ILE A 244 N ASP A 223 SHEET 3 A 5 GLN A 252 TYR A 261 -1 O ALA A 254 N LEU A 247 SHEET 4 A 5 LEU A 198 PRO A 203 1 N LEU A 201 O GLU A 260 SHEET 5 A 5 CYS A 309 TYR A 314 1 O ILE A 312 N LEU A 202 SHEET 1 B 5 ILE B 219 LYS B 224 0 SHEET 2 B 5 SER B 243 GLU B 249 -1 O ILE B 244 N ASP B 223 SHEET 3 B 5 GLN B 252 TYR B 261 -1 O ALA B 254 N LEU B 247 SHEET 4 B 5 LEU B 198 PRO B 203 1 N LEU B 201 O GLU B 260 SHEET 5 B 5 CYS B 309 TYR B 314 1 O ILE B 312 N LEU B 202 LINK C SER A 213 N MSE A 214 1555 1555 1.33 LINK C MSE A 214 N ALA A 215 1555 1555 1.33 LINK C ALA A 270 N MSE A 271 1555 1555 1.33 LINK C MSE A 271 N SER A 272 1555 1555 1.33 LINK C SER B 213 N MSE B 214 1555 1555 1.33 LINK C MSE B 214 N ALA B 215 1555 1555 1.33 LINK C ALA B 270 N MSE B 271 1555 1555 1.33 LINK C MSE B 271 N SER B 272 1555 1555 1.33 LINK O ALA B 318 CA CA B 401 1555 1555 2.36 LINK OD1 ASP B 320 CA CA B 401 1555 1555 2.44 LINK CA CA B 401 O HOH B 558 1555 1555 2.35 SITE 1 AC1 35 SER A 162 TYR A 163 GLY A 166 TYR A 167 SITE 2 AC1 35 ARG A 238 TYR A 240 GLU A 260 THR A 263 SITE 3 AC1 35 PRO A 264 HOH A 502 HOH A 503 HOH A 507 SITE 4 AC1 35 HOH A 512 HOH A 531 HOH A 535 HOH A 536 SITE 5 AC1 35 HOH A 538 HOH A 540 HOH A 555 HOH A 558 SITE 6 AC1 35 HOH A 565 HOH A 572 HOH A 574 HOH A 597 SITE 7 AC1 35 HOH A 600 SER B 162 GLY B 166 TYR B 167 SITE 8 AC1 35 TYR B 240 GLU B 260 THR B 263 PRO B 264 SITE 9 AC1 35 HOH B 503 HOH B 531 HOH B 547 SITE 1 AC2 6 ASP B 205 GLU B 316 ALA B 318 ASP B 320 SITE 2 AC2 6 HOH B 502 HOH B 558 CRYST1 69.797 78.215 128.222 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014327 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012785 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007799 0.00000