HEADER CYTOKINE 12-APR-12 4EN0 TITLE CRYSTAL STRUCTURE OF LIGHT COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 14; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN; COMPND 5 SYNONYM: HERPES VIRUS ENTRY MEDIATOR LIGAND, HVEM-L, HERPESVIRUS COMPND 6 ENTRY MEDIATOR LIGAND, TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY COMPND 7 MEMBER 14, MEMBRANE FORM, TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY COMPND 8 MEMBER 14, SOLUBLE FORM; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HVEML, LIGHT, TNFSF14, UNQ391/PRO726; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7215; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMT/BIP/V5-HIS KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, NEW YORK STRUCTURAL GENOMICS KEYWDS 2 RESEARCH CONSORTIUM, NYSGRC, IMMUNITY, TNF SUPERFAMILY, HVEM, DCR3, KEYWDS 3 N-GLYCOSYLATION, MEMBRANE, SECRETED PROTEIN, CYTOKINE, ATOMS-TO- KEYWDS 4 ANIMALS: THE IMMUNE FUNCTION NETWORK, IFN, JELLY-ROLL FOLD, BIND TNF KEYWDS 5 RECEPTOR HVEM AND LTBR, LTBR EXPDTA X-RAY DIFFRACTION AUTHOR C.ZHAN,W.LIU,Y.PATSKOVSKY,U.A.RAMAGOPAL,J.B.BONANNO,S.G.NATHENSON, AUTHOR 2 S.C.ALMO,NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC), AUTHOR 3 ATOMS-TO-ANIMALS: THE IMMUNE FUNCTION NETWORK (IFN) REVDAT 4 13-SEP-23 4EN0 1 HETSYN REVDAT 3 29-JUL-20 4EN0 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE REVDAT 2 31-DEC-14 4EN0 1 JRNL REVDAT 1 09-MAY-12 4EN0 0 SPRSDE 09-MAY-12 4EN0 3UGN JRNL AUTH W.LIU,C.ZHAN,H.CHENG,P.R.KUMAR,J.B.BONANNO,S.G.NATHENSON, JRNL AUTH 2 S.C.ALMO JRNL TITL MECHANISTIC BASIS FOR FUNCTIONAL PROMISCUITY IN THE TNF AND JRNL TITL 2 TNF RECEPTOR SUPERFAMILIES: STRUCTURE OF THE LIGHT:DCR3 JRNL TITL 3 ASSEMBLY. JRNL REF STRUCTURE V. 22 1252 2014 JRNL REFN ISSN 0969-2126 JRNL PMID 25087510 JRNL DOI 10.1016/J.STR.2014.06.013 REMARK 2 REMARK 2 RESOLUTION. 2.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 18647 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 956 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.1291 - 4.9532 1.00 2664 144 0.2349 0.2904 REMARK 3 2 4.9532 - 3.9321 1.00 2558 130 0.1802 0.2326 REMARK 3 3 3.9321 - 3.4353 1.00 2538 119 0.2183 0.2459 REMARK 3 4 3.4353 - 3.1213 1.00 2490 156 0.2461 0.3076 REMARK 3 5 3.1213 - 2.8976 1.00 2496 149 0.2742 0.3208 REMARK 3 6 2.8976 - 2.7268 1.00 2518 118 0.3155 0.3584 REMARK 3 7 2.7268 - 2.5902 0.97 2427 140 0.3503 0.4096 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 48.86 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -16.66070 REMARK 3 B22 (A**2) : 4.66800 REMARK 3 B33 (A**2) : 11.99270 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3404 REMARK 3 ANGLE : 0.788 4622 REMARK 3 CHIRALITY : 0.048 514 REMARK 3 PLANARITY : 0.003 586 REMARK 3 DIHEDRAL : 14.183 1195 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 93:240) REMARK 3 ORIGIN FOR THE GROUP (A): -14.9128 28.0133 13.7225 REMARK 3 T TENSOR REMARK 3 T11: 0.3478 T22: 0.6119 REMARK 3 T33: 0.3783 T12: -0.2620 REMARK 3 T13: -0.1789 T23: 0.2506 REMARK 3 L TENSOR REMARK 3 L11: 1.3469 L22: 1.8134 REMARK 3 L33: 2.6269 L12: 0.3645 REMARK 3 L13: 0.4160 L23: 0.0262 REMARK 3 S TENSOR REMARK 3 S11: -0.2988 S12: 0.3920 S13: 0.3560 REMARK 3 S21: -0.7086 S22: 0.4662 S23: 0.5145 REMARK 3 S31: -0.0484 S32: 0.3776 S33: 0.0098 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 92:240) REMARK 3 ORIGIN FOR THE GROUP (A): -16.3397 14.6728 31.0576 REMARK 3 T TENSOR REMARK 3 T11: 0.3898 T22: 0.5435 REMARK 3 T33: 0.3186 T12: 0.0928 REMARK 3 T13: 0.0295 T23: 0.2267 REMARK 3 L TENSOR REMARK 3 L11: 1.6278 L22: 3.0779 REMARK 3 L33: 3.8000 L12: 1.9108 REMARK 3 L13: -0.5350 L23: 0.3192 REMARK 3 S TENSOR REMARK 3 S11: -0.1680 S12: -0.3164 S13: -0.2729 REMARK 3 S21: 0.4905 S22: 0.4508 S23: 0.2940 REMARK 3 S31: 0.1309 S32: 0.3807 S33: -0.1998 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESSEQ 92:240) REMARK 3 ORIGIN FOR THE GROUP (A): -31.6603 14.1201 15.8158 REMARK 3 T TENSOR REMARK 3 T11: 0.2566 T22: 0.4554 REMARK 3 T33: 0.8162 T12: -0.1972 REMARK 3 T13: -0.2368 T23: 0.3107 REMARK 3 L TENSOR REMARK 3 L11: 2.2274 L22: 1.6089 REMARK 3 L33: 2.4257 L12: -0.5761 REMARK 3 L13: -0.5479 L23: -0.0147 REMARK 3 S TENSOR REMARK 3 S11: -0.2710 S12: 0.3383 S13: 0.2492 REMARK 3 S21: -0.4251 S22: 0.1159 S23: 1.0446 REMARK 3 S31: 0.2070 S32: -0.1658 S33: -0.0704 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4EN0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000071822. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18664 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : 0.09000 REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 0.95000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2QE3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.26M NAH2PO4, 0.14M K2HPO4 AND 0.2M REMARK 280 NDSB-211, PH 5.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 290.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 47.34950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.19100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.99050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.19100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.34950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.99050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 47.34950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.99050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 62.19100 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.99050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 47.34950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 62.19100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 74 REMARK 465 SER A 75 REMARK 465 HIS A 76 REMARK 465 HIS A 77 REMARK 465 HIS A 78 REMARK 465 HIS A 79 REMARK 465 HIS A 80 REMARK 465 HIS A 81 REMARK 465 GLY A 82 REMARK 465 LEU A 83 REMARK 465 ILE A 84 REMARK 465 GLN A 85 REMARK 465 GLU A 86 REMARK 465 ARG A 87 REMARK 465 ARG A 88 REMARK 465 SER A 89 REMARK 465 HIS A 90 REMARK 465 GLU A 91 REMARK 465 VAL A 92 REMARK 465 SER A 192 REMARK 465 SER A 193 REMARK 465 SER A 194 REMARK 465 ARG B 74 REMARK 465 SER B 75 REMARK 465 HIS B 76 REMARK 465 HIS B 77 REMARK 465 HIS B 78 REMARK 465 HIS B 79 REMARK 465 HIS B 80 REMARK 465 HIS B 81 REMARK 465 GLY B 82 REMARK 465 LEU B 83 REMARK 465 ILE B 84 REMARK 465 GLN B 85 REMARK 465 GLU B 86 REMARK 465 ARG B 87 REMARK 465 ARG B 88 REMARK 465 SER B 89 REMARK 465 HIS B 90 REMARK 465 GLU B 91 REMARK 465 LEU B 105 REMARK 465 THR B 106 REMARK 465 GLY B 107 REMARK 465 GLY B 157 REMARK 465 LEU B 158 REMARK 465 ALA B 159 REMARK 465 ARG C 74 REMARK 465 SER C 75 REMARK 465 HIS C 76 REMARK 465 HIS C 77 REMARK 465 HIS C 78 REMARK 465 HIS C 79 REMARK 465 HIS C 80 REMARK 465 HIS C 81 REMARK 465 GLY C 82 REMARK 465 LEU C 83 REMARK 465 ILE C 84 REMARK 465 GLN C 85 REMARK 465 GLU C 86 REMARK 465 ARG C 87 REMARK 465 ARG C 88 REMARK 465 SER C 89 REMARK 465 HIS C 90 REMARK 465 GLU C 91 REMARK 465 LEU C 105 REMARK 465 THR C 106 REMARK 465 GLY C 107 REMARK 465 SER C 108 REMARK 465 GLY C 109 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 156 CG CD1 CD2 REMARK 470 LEU A 158 CG CD1 CD2 REMARK 470 ARG A 195 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 156 CG CD1 CD2 REMARK 470 ARG B 189 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 156 CB CG CD1 CD2 REMARK 470 TYR C 173 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG C 189 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 108 35.80 -96.95 REMARK 500 LEU A 158 -99.87 -106.41 REMARK 500 LEU A 179 -62.86 -101.41 REMARK 500 SER A 185 140.51 -176.74 REMARK 500 PHE A 235 112.22 -162.17 REMARK 500 PRO B 171 -15.01 -49.67 REMARK 500 ASP B 221 74.41 56.80 REMARK 500 CYS C 154 62.39 63.42 REMARK 500 PRO C 174 78.50 -65.92 REMARK 500 LEU C 179 -74.94 -92.88 REMARK 500 ASP C 221 75.11 56.88 REMARK 500 ARG C 228 -38.62 -35.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-011104 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE DIFFERENCE BETWEEN SEQUENCE AND UNP REFERENCE REFLECTS NATURAL REMARK 999 VARIATION DBREF 4EN0 A 83 240 UNP O43557 TNF14_HUMAN 83 240 DBREF 4EN0 B 83 240 UNP O43557 TNF14_HUMAN 83 240 DBREF 4EN0 C 83 240 UNP O43557 TNF14_HUMAN 83 240 SEQADV 4EN0 ARG A 74 UNP O43557 EXPRESSION TAG SEQADV 4EN0 SER A 75 UNP O43557 EXPRESSION TAG SEQADV 4EN0 HIS A 76 UNP O43557 EXPRESSION TAG SEQADV 4EN0 HIS A 77 UNP O43557 EXPRESSION TAG SEQADV 4EN0 HIS A 78 UNP O43557 EXPRESSION TAG SEQADV 4EN0 HIS A 79 UNP O43557 EXPRESSION TAG SEQADV 4EN0 HIS A 80 UNP O43557 EXPRESSION TAG SEQADV 4EN0 HIS A 81 UNP O43557 EXPRESSION TAG SEQADV 4EN0 GLY A 82 UNP O43557 EXPRESSION TAG SEQADV 4EN0 GLU A 214 UNP O43557 LYS 214 SEE REMARK 999 SEQADV 4EN0 ARG B 74 UNP O43557 EXPRESSION TAG SEQADV 4EN0 SER B 75 UNP O43557 EXPRESSION TAG SEQADV 4EN0 HIS B 76 UNP O43557 EXPRESSION TAG SEQADV 4EN0 HIS B 77 UNP O43557 EXPRESSION TAG SEQADV 4EN0 HIS B 78 UNP O43557 EXPRESSION TAG SEQADV 4EN0 HIS B 79 UNP O43557 EXPRESSION TAG SEQADV 4EN0 HIS B 80 UNP O43557 EXPRESSION TAG SEQADV 4EN0 HIS B 81 UNP O43557 EXPRESSION TAG SEQADV 4EN0 GLY B 82 UNP O43557 EXPRESSION TAG SEQADV 4EN0 GLU B 214 UNP O43557 LYS 214 SEE REMARK 999 SEQADV 4EN0 ARG C 74 UNP O43557 EXPRESSION TAG SEQADV 4EN0 SER C 75 UNP O43557 EXPRESSION TAG SEQADV 4EN0 HIS C 76 UNP O43557 EXPRESSION TAG SEQADV 4EN0 HIS C 77 UNP O43557 EXPRESSION TAG SEQADV 4EN0 HIS C 78 UNP O43557 EXPRESSION TAG SEQADV 4EN0 HIS C 79 UNP O43557 EXPRESSION TAG SEQADV 4EN0 HIS C 80 UNP O43557 EXPRESSION TAG SEQADV 4EN0 HIS C 81 UNP O43557 EXPRESSION TAG SEQADV 4EN0 GLY C 82 UNP O43557 EXPRESSION TAG SEQADV 4EN0 GLU C 214 UNP O43557 LYS 214 SEE REMARK 999 SEQRES 1 A 167 ARG SER HIS HIS HIS HIS HIS HIS GLY LEU ILE GLN GLU SEQRES 2 A 167 ARG ARG SER HIS GLU VAL ASN PRO ALA ALA HIS LEU THR SEQRES 3 A 167 GLY ALA ASN SER SER LEU THR GLY SER GLY GLY PRO LEU SEQRES 4 A 167 LEU TRP GLU THR GLN LEU GLY LEU ALA PHE LEU ARG GLY SEQRES 5 A 167 LEU SER TYR HIS ASP GLY ALA LEU VAL VAL THR LYS ALA SEQRES 6 A 167 GLY TYR TYR TYR ILE TYR SER LYS VAL GLN LEU GLY GLY SEQRES 7 A 167 VAL GLY CYS PRO LEU GLY LEU ALA SER THR ILE THR HIS SEQRES 8 A 167 GLY LEU TYR LYS ARG THR PRO ARG TYR PRO GLU GLU LEU SEQRES 9 A 167 GLU LEU LEU VAL SER GLN GLN SER PRO CYS GLY ARG ALA SEQRES 10 A 167 THR SER SER SER ARG VAL TRP TRP ASP SER SER PHE LEU SEQRES 11 A 167 GLY GLY VAL VAL HIS LEU GLU ALA GLY GLU GLU VAL VAL SEQRES 12 A 167 VAL ARG VAL LEU ASP GLU ARG LEU VAL ARG LEU ARG ASP SEQRES 13 A 167 GLY THR ARG SER TYR PHE GLY ALA PHE MET VAL SEQRES 1 B 167 ARG SER HIS HIS HIS HIS HIS HIS GLY LEU ILE GLN GLU SEQRES 2 B 167 ARG ARG SER HIS GLU VAL ASN PRO ALA ALA HIS LEU THR SEQRES 3 B 167 GLY ALA ASN SER SER LEU THR GLY SER GLY GLY PRO LEU SEQRES 4 B 167 LEU TRP GLU THR GLN LEU GLY LEU ALA PHE LEU ARG GLY SEQRES 5 B 167 LEU SER TYR HIS ASP GLY ALA LEU VAL VAL THR LYS ALA SEQRES 6 B 167 GLY TYR TYR TYR ILE TYR SER LYS VAL GLN LEU GLY GLY SEQRES 7 B 167 VAL GLY CYS PRO LEU GLY LEU ALA SER THR ILE THR HIS SEQRES 8 B 167 GLY LEU TYR LYS ARG THR PRO ARG TYR PRO GLU GLU LEU SEQRES 9 B 167 GLU LEU LEU VAL SER GLN GLN SER PRO CYS GLY ARG ALA SEQRES 10 B 167 THR SER SER SER ARG VAL TRP TRP ASP SER SER PHE LEU SEQRES 11 B 167 GLY GLY VAL VAL HIS LEU GLU ALA GLY GLU GLU VAL VAL SEQRES 12 B 167 VAL ARG VAL LEU ASP GLU ARG LEU VAL ARG LEU ARG ASP SEQRES 13 B 167 GLY THR ARG SER TYR PHE GLY ALA PHE MET VAL SEQRES 1 C 167 ARG SER HIS HIS HIS HIS HIS HIS GLY LEU ILE GLN GLU SEQRES 2 C 167 ARG ARG SER HIS GLU VAL ASN PRO ALA ALA HIS LEU THR SEQRES 3 C 167 GLY ALA ASN SER SER LEU THR GLY SER GLY GLY PRO LEU SEQRES 4 C 167 LEU TRP GLU THR GLN LEU GLY LEU ALA PHE LEU ARG GLY SEQRES 5 C 167 LEU SER TYR HIS ASP GLY ALA LEU VAL VAL THR LYS ALA SEQRES 6 C 167 GLY TYR TYR TYR ILE TYR SER LYS VAL GLN LEU GLY GLY SEQRES 7 C 167 VAL GLY CYS PRO LEU GLY LEU ALA SER THR ILE THR HIS SEQRES 8 C 167 GLY LEU TYR LYS ARG THR PRO ARG TYR PRO GLU GLU LEU SEQRES 9 C 167 GLU LEU LEU VAL SER GLN GLN SER PRO CYS GLY ARG ALA SEQRES 10 C 167 THR SER SER SER ARG VAL TRP TRP ASP SER SER PHE LEU SEQRES 11 C 167 GLY GLY VAL VAL HIS LEU GLU ALA GLY GLU GLU VAL VAL SEQRES 12 C 167 VAL ARG VAL LEU ASP GLU ARG LEU VAL ARG LEU ARG ASP SEQRES 13 C 167 GLY THR ARG SER TYR PHE GLY ALA PHE MET VAL MODRES 4EN0 ASN A 102 ASN GLYCOSYLATION SITE HET PO4 A 301 5 HET GOL A 302 6 HET NAG A 303 14 HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 PO4 O4 P 3- FORMUL 5 GOL C3 H8 O3 FORMUL 6 NAG C8 H15 N O6 FORMUL 7 HOH *12(H2 O) HELIX 1 1 LEU A 105 GLY A 109 5 5 HELIX 2 2 SER A 185 ALA A 190 5 6 HELIX 3 3 ARG A 228 SER A 233 1 6 HELIX 4 4 ASP B 221 VAL B 225 5 5 HELIX 5 5 LEU C 156 SER C 160 5 5 SHEET 1 A 3 LEU A 113 GLU A 115 0 SHEET 2 A 3 ALA A 95 ASN A 102 -1 N THR A 99 O GLU A 115 SHEET 3 A 3 PHE A 122 ARG A 124 -1 O ARG A 124 N ALA A 95 SHEET 1 B 5 LEU A 113 GLU A 115 0 SHEET 2 B 5 ALA A 95 ASN A 102 -1 N THR A 99 O GLU A 115 SHEET 3 B 5 TYR A 234 MET A 239 -1 O ALA A 237 N ALA A 96 SHEET 4 B 5 GLY A 139 GLY A 151 -1 N TYR A 142 O PHE A 238 SHEET 5 B 5 TRP A 197 LEU A 209 -1 O ASP A 199 N LEU A 149 SHEET 1 C 5 LEU A 126 HIS A 129 0 SHEET 2 C 5 ALA A 132 VAL A 135 -1 O VAL A 134 N SER A 127 SHEET 3 C 5 GLU A 214 LEU A 220 -1 O VAL A 215 N LEU A 133 SHEET 4 C 5 ILE A 162 ARG A 169 -1 N TYR A 167 O VAL A 216 SHEET 5 C 5 GLU A 176 GLN A 184 -1 O SER A 182 N HIS A 164 SHEET 1 D 3 TRP B 114 GLU B 115 0 SHEET 2 D 3 ALA B 95 GLY B 100 -1 N THR B 99 O GLU B 115 SHEET 3 D 3 PHE B 122 LEU B 123 -1 O PHE B 122 N HIS B 97 SHEET 1 E 5 TRP B 114 GLU B 115 0 SHEET 2 E 5 ALA B 95 GLY B 100 -1 N THR B 99 O GLU B 115 SHEET 3 E 5 TYR B 234 MET B 239 -1 O PHE B 235 N LEU B 98 SHEET 4 E 5 GLY B 139 VAL B 152 -1 N TYR B 144 O GLY B 236 SHEET 5 E 5 VAL B 196 LEU B 209 -1 O VAL B 207 N TYR B 141 SHEET 1 F 5 SER B 127 HIS B 129 0 SHEET 2 F 5 ALA B 132 VAL B 134 -1 O VAL B 134 N SER B 127 SHEET 3 F 5 GLU B 214 VAL B 219 -1 O VAL B 215 N LEU B 133 SHEET 4 F 5 ILE B 162 ARG B 169 -1 N ARG B 169 O GLU B 214 SHEET 5 F 5 LEU B 177 GLN B 184 -1 O LEU B 177 N LYS B 168 SHEET 1 G 5 PHE C 122 LEU C 123 0 SHEET 2 G 5 ALA C 95 LEU C 98 -1 N HIS C 97 O PHE C 122 SHEET 3 G 5 TYR C 234 MET C 239 -1 O ALA C 237 N ALA C 96 SHEET 4 G 5 GLY C 139 GLY C 151 -1 N TYR C 142 O PHE C 238 SHEET 5 G 5 TRP C 197 LEU C 209 -1 O ASP C 199 N LEU C 149 SHEET 1 H 5 LEU C 126 HIS C 129 0 SHEET 2 H 5 ALA C 132 VAL C 135 -1 O ALA C 132 N HIS C 129 SHEET 3 H 5 GLU C 214 VAL C 219 -1 O VAL C 215 N LEU C 133 SHEET 4 H 5 ILE C 162 THR C 170 -1 N TYR C 167 O VAL C 216 SHEET 5 H 5 GLU C 175 GLN C 184 -1 O LEU C 179 N LEU C 166 SSBOND 1 CYS A 154 CYS A 187 1555 1555 2.03 SSBOND 2 CYS B 154 CYS B 187 1555 1555 2.03 SSBOND 3 CYS C 154 CYS C 187 1555 1555 1.99 LINK ND2 ASN A 102 C1 NAG A 303 1555 1555 1.44 CRYST1 94.699 99.981 124.382 90.00 90.00 90.00 I 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010560 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010002 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008040 0.00000