data_4ENM # _entry.id 4ENM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4ENM pdb_00004enm 10.2210/pdb4enm/pdb NDB NA1752 ? ? RCSB RCSB071842 ? ? WWPDB D_1000071842 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 4ENJ unspecified . PDB 4ENK unspecified . PDB 4ENN unspecified . # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4ENM _pdbx_database_status.recvd_initial_deposition_date 2012-04-13 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tubbs, J.L.' 1 'Arvai, A.S.' 2 'Tainer, J.A.' 3 # _citation.id primary _citation.title 'Atl1 Regulates Choice between Global Genome and Transcription-Coupled Repair of O(6)-Alkylguanines.' _citation.journal_abbrev Mol.Cell _citation.journal_volume 47 _citation.page_first 50 _citation.page_last 60 _citation.year 2012 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22658721 _citation.pdbx_database_id_DOI 10.1016/j.molcel.2012.04.028 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Latypov, V.F.' 1 ? primary 'Tubbs, J.L.' 2 ? primary 'Watson, A.J.' 3 ? primary 'Marriott, A.S.' 4 ? primary 'McGown, G.' 5 ? primary 'Thorncroft, M.' 6 ? primary 'Wilkinson, O.J.' 7 ? primary 'Senthong, P.' 8 ? primary 'Butt, A.' 9 ? primary 'Arvai, A.S.' 10 ? primary 'Millington, C.L.' 11 ? primary 'Povey, A.C.' 12 ? primary 'Williams, D.M.' 13 ? primary 'Santibanez-Koref, M.F.' 14 ? primary 'Tainer, J.A.' 15 ? primary 'Margison, G.P.' 16 ? # _cell.entry_id 4ENM _cell.length_a 59.900 _cell.length_b 59.900 _cell.length_c 237.051 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4ENM _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Alkyltransferase-like protein 1' 13662.412 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*GP*CP*CP*AP*TP*GP*(BZG)P*CP*TP*AP*GP*TP*A)-3') ; 4081.733 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*CP*TP*AP*CP*TP*AP*GP*CP*CP*AP*TP*GP*G)-3') ; 3951.586 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MRMDEFYTKVYDAVCEIPYGKVSTYGEIARYVGMPSYARQVGQAMKHLHPETHVPWHRVINSRGTISKRDISAGEQRQKD RLEEEGVEIYQTSLGEYKLNLPEYMWKPGSHHHHHH ; ;MRMDEFYTKVYDAVCEIPYGKVSTYGEIARYVGMPSYARQVGQAMKHLHPETHVPWHRVINSRGTISKRDISAGEQRQKD RLEEEGVEIYQTSLGEYKLNLPEYMWKPGSHHHHHH ; A ? 2 polydeoxyribonucleotide no yes '(DG)(DC)(DC)(DA)(DT)(DG)(BZG)(DC)(DT)(DA)(DG)(DT)(DA)' GCCATGNCTAGTA B ? 3 polydeoxyribonucleotide no no '(DC)(DT)(DA)(DC)(DT)(DA)(DG)(DC)(DC)(DA)(DT)(DG)(DG)' CTACTAGCCATGG C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ARG n 1 3 MET n 1 4 ASP n 1 5 GLU n 1 6 PHE n 1 7 TYR n 1 8 THR n 1 9 LYS n 1 10 VAL n 1 11 TYR n 1 12 ASP n 1 13 ALA n 1 14 VAL n 1 15 CYS n 1 16 GLU n 1 17 ILE n 1 18 PRO n 1 19 TYR n 1 20 GLY n 1 21 LYS n 1 22 VAL n 1 23 SER n 1 24 THR n 1 25 TYR n 1 26 GLY n 1 27 GLU n 1 28 ILE n 1 29 ALA n 1 30 ARG n 1 31 TYR n 1 32 VAL n 1 33 GLY n 1 34 MET n 1 35 PRO n 1 36 SER n 1 37 TYR n 1 38 ALA n 1 39 ARG n 1 40 GLN n 1 41 VAL n 1 42 GLY n 1 43 GLN n 1 44 ALA n 1 45 MET n 1 46 LYS n 1 47 HIS n 1 48 LEU n 1 49 HIS n 1 50 PRO n 1 51 GLU n 1 52 THR n 1 53 HIS n 1 54 VAL n 1 55 PRO n 1 56 TRP n 1 57 HIS n 1 58 ARG n 1 59 VAL n 1 60 ILE n 1 61 ASN n 1 62 SER n 1 63 ARG n 1 64 GLY n 1 65 THR n 1 66 ILE n 1 67 SER n 1 68 LYS n 1 69 ARG n 1 70 ASP n 1 71 ILE n 1 72 SER n 1 73 ALA n 1 74 GLY n 1 75 GLU n 1 76 GLN n 1 77 ARG n 1 78 GLN n 1 79 LYS n 1 80 ASP n 1 81 ARG n 1 82 LEU n 1 83 GLU n 1 84 GLU n 1 85 GLU n 1 86 GLY n 1 87 VAL n 1 88 GLU n 1 89 ILE n 1 90 TYR n 1 91 GLN n 1 92 THR n 1 93 SER n 1 94 LEU n 1 95 GLY n 1 96 GLU n 1 97 TYR n 1 98 LYS n 1 99 LEU n 1 100 ASN n 1 101 LEU n 1 102 PRO n 1 103 GLU n 1 104 TYR n 1 105 MET n 1 106 TRP n 1 107 LYS n 1 108 PRO n 1 109 GLY n 1 110 SER n 1 111 HIS n 1 112 HIS n 1 113 HIS n 1 114 HIS n 1 115 HIS n 1 116 HIS n 2 1 DG n 2 2 DC n 2 3 DC n 2 4 DA n 2 5 DT n 2 6 DG n 2 7 BZG n 2 8 DC n 2 9 DT n 2 10 DA n 2 11 DG n 2 12 DT n 2 13 DA n 3 1 DC n 3 2 DT n 3 3 DA n 3 4 DC n 3 5 DT n 3 6 DA n 3 7 DG n 3 8 DC n 3 9 DC n 3 10 DA n 3 11 DT n 3 12 DG n 3 13 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Fission yeast' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'atl1, SPAC1250.04c' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain '972 / ATCC 24843' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Schizosaccharomyces pombe' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 284812 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? 'synthetic construct' ? 32630 ? 3 1 sample ? ? 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP ATL1_SCHPO Q9UTN9 1 ;MRMDEFYTKVYDAVCEIPYGKVSTYGEIARYVGMPSYARQVGQAMKHLHPETHVPWHRVINSRGTISKRDISAGEQRQKD RLEEEGVEIYQTSLGEYKLNLPEYMWKP ; 1 ? 2 PDB 4ENM 4ENM 2 GCCATGNCTAGTA 1 ? 3 PDB 4ENM 4ENM 3 CTACTAGCCATGG 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4ENM A 1 ? 108 ? Q9UTN9 1 ? 108 ? 1 108 2 2 4ENM B 1 ? 13 ? 4ENM 1 ? 13 ? 1 13 3 3 4ENM C 1 ? 13 ? 4ENM 14 ? 26 ? 14 26 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4ENM GLY A 109 ? UNP Q9UTN9 ? ? 'expression tag' 109 1 1 4ENM SER A 110 ? UNP Q9UTN9 ? ? 'expression tag' 110 2 1 4ENM HIS A 111 ? UNP Q9UTN9 ? ? 'expression tag' 111 3 1 4ENM HIS A 112 ? UNP Q9UTN9 ? ? 'expression tag' 112 4 1 4ENM HIS A 113 ? UNP Q9UTN9 ? ? 'expression tag' 113 5 1 4ENM HIS A 114 ? UNP Q9UTN9 ? ? 'expression tag' 114 6 1 4ENM HIS A 115 ? UNP Q9UTN9 ? ? 'expression tag' 115 7 1 4ENM HIS A 116 ? UNP Q9UTN9 ? ? 'expression tag' 116 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BZG 'DNA linking' . '6-(BENZYLOXY)-9-(2-DEOXY-5-O-PHOSPHONO-BETA-D-ERYTHRO-PENTOFURANOSYL)-9H-PURIN-2-AMINE' "O6-BENZYL-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" 'C17 H20 N5 O7 P' 437.344 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4ENM _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.96 _exptl_crystal.density_percent_sol 58.47 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 288 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.4 _exptl_crystal_grow.pdbx_details '15% mPEG 2000, 0.2M imidazole-malate, 30% xylose, pH 5.4, VAPOR DIFFUSION, HANGING DROP, temperature 288K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.pdbx_collection_date 2008-07-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Curved crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97945 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97945 # _reflns.entry_id 4ENM _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 2.84 _reflns.number_obs 6178 _reflns.number_all 6178 _reflns.percent_possible_obs 93.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.84 _reflns_shell.d_res_low 2.94 _reflns_shell.percent_possible_all 61.1 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4ENM _refine.ls_number_reflns_obs 5915 _refine.ls_number_reflns_all 5915 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.11 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 39.033 _refine.ls_d_res_high 2.8402 _refine.ls_percent_reflns_obs 89.99 _refine.ls_R_factor_obs 0.1812 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1732 _refine.ls_R_factor_R_free 0.2526 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.97 _refine.ls_number_reflns_R_free 590 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 15.0050 _refine.aniso_B[2][2] 15.0050 _refine.aniso_B[3][3] -30.0101 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.314 _refine.solvent_model_param_bsol 67.163 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 3GVA' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.37 _refine.pdbx_overall_phase_error 26.54 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 890 _refine_hist.pdbx_number_atoms_nucleic_acid 534 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1424 _refine_hist.d_res_high 2.8402 _refine_hist.d_res_low 39.033 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.008 ? ? 1512 ? 'X-RAY DIFFRACTION' f_angle_d 1.275 ? ? 2151 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 25.572 ? ? 616 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.065 ? ? 226 ? 'X-RAY DIFFRACTION' f_plane_restr 0.004 ? ? 187 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.8402 3.1259 929 0.2978 66.00 0.3752 . . 102 . . . . 'X-RAY DIFFRACTION' . 3.1259 3.5779 1365 0.1928 96.00 0.2411 . . 153 . . . . 'X-RAY DIFFRACTION' . 3.5779 4.5067 1464 0.1583 99.00 0.2348 . . 160 . . . . 'X-RAY DIFFRACTION' . 4.5067 39.0370 1567 0.1593 98.00 0.2434 . . 175 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4ENM _struct.title 'Crystal structure of S. pombe Atl1 in complex with damaged DNA containing O6-benzylguanine' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4ENM _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' _struct_keywords.text ;Alkyltransferase, DNA repair, nucleotide excision repair, NER, base repair, DNA, DNA Damage, Guanine, Alkylation, DNA BINDING PROTEIN-DNA complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 2 ? ILE A 17 ? ARG A 2 ILE A 17 1 ? 16 HELX_P HELX_P2 2 TYR A 25 ? VAL A 32 ? TYR A 25 VAL A 32 1 ? 8 HELX_P HELX_P3 3 TYR A 37 ? HIS A 47 ? TYR A 37 HIS A 47 1 ? 11 HELX_P HELX_P4 4 PRO A 55 ? HIS A 57 ? PRO A 55 HIS A 57 5 ? 3 HELX_P HELX_P5 5 GLU A 75 ? GLU A 85 ? GLU A 75 GLU A 85 1 ? 11 HELX_P HELX_P6 6 ASN A 100 ? MET A 105 ? ASN A 100 MET A 105 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? B DC 2 N3 ? ? ? 1_555 C DG 13 N1 ? ? B DC 2 C DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DC 2 N4 ? ? ? 1_555 C DG 13 O6 ? ? B DC 2 C DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 2 O2 ? ? ? 1_555 C DG 13 N2 ? ? B DC 2 C DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DC 3 N4 ? ? ? 1_555 C DG 12 O6 ? ? B DC 3 C DG 25 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog5 hydrog ? ? B DA 4 N1 ? ? ? 1_555 C DT 11 N3 ? ? B DA 4 C DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DA 4 N6 ? ? ? 1_555 C DT 11 O4 ? ? B DA 4 C DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DT 5 N3 ? ? ? 1_555 C DA 10 N1 ? ? B DT 5 C DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DT 5 O4 ? ? ? 1_555 C DA 10 N6 ? ? B DT 5 C DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 6 N1 ? ? ? 1_555 C DC 9 N3 ? ? B DG 6 C DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 6 N2 ? ? ? 1_555 C DC 9 O2 ? ? B DG 6 C DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DG 6 O6 ? ? ? 1_555 C DC 9 N4 ? ? B DG 6 C DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DC 8 N3 ? ? ? 1_555 C DG 7 N1 ? ? B DC 8 C DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DC 8 N4 ? ? ? 1_555 C DG 7 O6 ? ? B DC 8 C DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DC 8 O2 ? ? ? 1_555 C DG 7 N2 ? ? B DC 8 C DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 6 N6 ? ? B DT 9 C DA 19 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog16 hydrog ? ? B DA 10 N1 ? ? ? 1_555 C DT 5 N3 ? ? B DA 10 C DT 18 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog17 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 4 N3 ? ? B DG 11 C DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 4 O2 ? ? B DG 11 C DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 4 N4 ? ? B DG 11 C DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DT 12 N3 ? ? ? 1_555 C DA 3 N1 ? ? B DT 12 C DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DT 12 O4 ? ? ? 1_555 C DA 3 N6 ? ? B DT 12 C DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DA 13 N1 ? ? ? 1_555 C DT 2 N3 ? ? B DA 13 C DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DA 13 N6 ? ? ? 1_555 C DT 2 O4 ? ? B DA 13 C DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 23 ? THR A 24 ? SER A 23 THR A 24 A 2 VAL A 59 ? ILE A 60 ? VAL A 59 ILE A 60 B 1 TYR A 90 ? GLN A 91 ? TYR A 90 GLN A 91 B 2 TYR A 97 ? LYS A 98 ? TYR A 97 LYS A 98 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 23 ? N SER A 23 O ILE A 60 ? O ILE A 60 B 1 2 N TYR A 90 ? N TYR A 90 O LYS A 98 ? O LYS A 98 # _database_PDB_matrix.entry_id 4ENM _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4ENM _atom_sites.fract_transf_matrix[1][1] 0.016694 _atom_sites.fract_transf_matrix[1][2] 0.009639 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019277 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004219 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ARG 2 2 2 ARG ARG A . n A 1 3 MET 3 3 3 MET MET A . n A 1 4 ASP 4 4 4 ASP ASP A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 PHE 6 6 6 PHE PHE A . n A 1 7 TYR 7 7 7 TYR TYR A . n A 1 8 THR 8 8 8 THR THR A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 TYR 11 11 11 TYR TYR A . n A 1 12 ASP 12 12 12 ASP ASP A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 CYS 15 15 15 CYS CYS A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 TYR 19 19 19 TYR TYR A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 THR 24 24 24 THR THR A . n A 1 25 TYR 25 25 25 TYR TYR A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 GLU 27 27 27 GLU GLU A . n A 1 28 ILE 28 28 28 ILE ILE A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 ARG 30 30 30 ARG ARG A . n A 1 31 TYR 31 31 31 TYR TYR A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 MET 34 34 34 MET MET A . n A 1 35 PRO 35 35 35 PRO PRO A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 TYR 37 37 37 TYR TYR A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 ARG 39 39 39 ARG ARG A . n A 1 40 GLN 40 40 40 GLN GLN A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 GLN 43 43 43 GLN GLN A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 MET 45 45 45 MET MET A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 HIS 47 47 47 HIS HIS A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 HIS 49 49 49 HIS HIS A . n A 1 50 PRO 50 50 50 PRO PRO A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 HIS 53 53 53 HIS HIS A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 PRO 55 55 55 PRO PRO A . n A 1 56 TRP 56 56 56 TRP TRP A . n A 1 57 HIS 57 57 57 HIS HIS A . n A 1 58 ARG 58 58 58 ARG ARG A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 ILE 60 60 60 ILE ILE A . n A 1 61 ASN 61 61 61 ASN ASN A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 ARG 63 63 63 ARG ARG A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 THR 65 65 65 THR THR A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 ARG 69 69 69 ARG ARG A . n A 1 70 ASP 70 70 70 ASP ASP A . n A 1 71 ILE 71 71 71 ILE ILE A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 GLN 76 76 76 GLN GLN A . n A 1 77 ARG 77 77 77 ARG ARG A . n A 1 78 GLN 78 78 78 GLN GLN A . n A 1 79 LYS 79 79 79 LYS LYS A . n A 1 80 ASP 80 80 80 ASP ASP A . n A 1 81 ARG 81 81 81 ARG ARG A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 GLU 88 88 88 GLU GLU A . n A 1 89 ILE 89 89 89 ILE ILE A . n A 1 90 TYR 90 90 90 TYR TYR A . n A 1 91 GLN 91 91 91 GLN GLN A . n A 1 92 THR 92 92 92 THR THR A . n A 1 93 SER 93 93 93 SER SER A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 TYR 97 97 97 TYR TYR A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 ASN 100 100 100 ASN ASN A . n A 1 101 LEU 101 101 101 LEU LEU A . n A 1 102 PRO 102 102 102 PRO PRO A . n A 1 103 GLU 103 103 103 GLU GLU A . n A 1 104 TYR 104 104 104 TYR TYR A . n A 1 105 MET 105 105 105 MET MET A . n A 1 106 TRP 106 106 106 TRP TRP A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 PRO 108 108 108 PRO PRO A . n A 1 109 GLY 109 109 ? ? ? A . n A 1 110 SER 110 110 ? ? ? A . n A 1 111 HIS 111 111 ? ? ? A . n A 1 112 HIS 112 112 ? ? ? A . n A 1 113 HIS 113 113 ? ? ? A . n A 1 114 HIS 114 114 ? ? ? A . n A 1 115 HIS 115 115 ? ? ? A . n A 1 116 HIS 116 116 ? ? ? A . n B 2 1 DG 1 1 1 DG DG B . n B 2 2 DC 2 2 2 DC DC B . n B 2 3 DC 3 3 3 DC DC B . n B 2 4 DA 4 4 4 DA DA B . n B 2 5 DT 5 5 5 DT DT B . n B 2 6 DG 6 6 6 DG DG B . n B 2 7 BZG 7 7 7 BZG BZG B . n B 2 8 DC 8 8 8 DC DC B . n B 2 9 DT 9 9 9 DT DT B . n B 2 10 DA 10 10 10 DA DA B . n B 2 11 DG 11 11 11 DG DG B . n B 2 12 DT 12 12 12 DT DT B . n B 2 13 DA 13 13 13 DA DA B . n C 3 1 DC 1 14 14 DC DC C . n C 3 2 DT 2 15 15 DT DT C . n C 3 3 DA 3 16 16 DA DA C . n C 3 4 DC 4 17 17 DC DC C . n C 3 5 DT 5 18 18 DT DT C . n C 3 6 DA 6 19 19 DA DA C . n C 3 7 DG 7 20 20 DG DG C . n C 3 8 DC 8 21 21 DC DC C . n C 3 9 DC 9 22 22 DC DC C . n C 3 10 DA 10 23 23 DA DA C . n C 3 11 DT 11 24 24 DT DT C . n C 3 12 DG 12 25 25 DG DG C . n C 3 13 DG 13 26 26 DG DG C . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3380 ? 1 MORE -13 ? 1 'SSA (A^2)' 9610 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-06-20 2 'Structure model' 1 1 2012-08-01 3 'Structure model' 1 2 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_ref_seq 6 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq.db_align_beg' 4 3 'Structure model' '_struct_ref_seq.db_align_end' 5 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 32.7237 -23.2597 19.6716 0.4816 0.9007 0.8785 -0.1258 0.3332 0.0072 1.1182 2.0804 1.8666 -1.0983 0.6618 -1.9062 -1.3337 -1.6990 -0.7292 0.7297 -0.0830 -0.4809 -0.4833 -0.9554 -0.0908 'X-RAY DIFFRACTION' 2 ? refined 30.1168 -19.1712 13.9637 0.7093 0.8646 0.6683 0.1351 -0.0528 -0.2278 0.0474 0.9452 0.3273 -0.2179 0.0129 -0.0480 -1.1288 0.6982 1.1224 0.9969 -0.7899 -0.9156 -0.0067 -1.8900 0.0218 'X-RAY DIFFRACTION' 3 ? refined 32.2269 -13.0915 5.9153 0.7146 0.8737 0.8804 0.0289 0.2315 0.0832 0.1721 0.7085 0.0974 0.0900 -0.0050 -0.2686 0.7937 -1.2628 3.0528 1.2530 -0.9719 -1.3877 -2.8951 -0.1264 -0.0320 'X-RAY DIFFRACTION' 4 ? refined 30.5143 -14.8439 -2.8125 0.9591 0.8404 1.0479 0.3669 0.0874 0.1312 0.6579 0.0703 0.0403 0.2183 -0.3093 -0.1117 -0.1762 -0.5342 2.3566 0.2695 1.2354 -0.5179 -2.3304 -0.4724 0.0162 'X-RAY DIFFRACTION' 5 ? refined 35.7698 -23.2259 4.9532 0.4196 0.7021 0.9898 0.0121 0.2039 -0.1707 1.7530 0.7927 7.9810 -1.0578 3.4719 -1.3196 0.2744 -0.5554 0.7418 -1.3521 -0.8397 -0.6916 3.8271 0.6019 0.0592 'X-RAY DIFFRACTION' 6 ? refined 36.8858 -27.6025 11.5308 0.2661 0.5971 0.8304 0.1505 0.0282 0.0823 0.2184 2.3685 2.1655 0.4165 -0.0291 1.1669 0.5723 0.4139 1.0964 -1.8493 -1.0350 -3.2490 0.2043 3.2761 -0.0298 'X-RAY DIFFRACTION' 7 ? refined 27.9272 -28.7356 9.3148 0.5042 0.8938 0.7001 -0.0337 0.2346 0.0680 0.1667 0.1711 0.4690 0.0026 0.2950 -0.0969 -0.4458 -2.4498 0.7331 -0.4759 0.4478 0.0359 1.6588 -0.5029 0.0028 'X-RAY DIFFRACTION' 8 ? refined 20.2070 -20.5583 10.9369 0.3829 1.1691 1.0793 -0.0352 0.3378 0.0590 0.7143 1.1117 2.2850 0.1607 0.0812 1.3556 0.0533 -1.5971 0.4847 0.5397 0.4503 1.2310 0.9346 -1.9967 -0.0222 'X-RAY DIFFRACTION' 9 ? refined 21.2130 -11.6590 8.4439 1.1922 1.4971 0.8613 0.3022 0.2738 -0.2349 -0.0032 1.3935 0.0065 -0.1432 0.0360 -0.1171 -0.4559 0.0537 2.6185 0.5828 0.3957 1.6532 2.3166 -0.9221 -0.0172 'X-RAY DIFFRACTION' 10 ? refined 25.0324 -17.4883 1.0380 0.5869 0.6332 0.7769 0.1555 0.0344 -0.0754 0.2878 0.4384 0.1414 -0.0005 0.0435 0.2767 0.3086 -0.7365 0.7200 -1.2596 -0.9685 -1.0581 -0.9894 0.0705 -0.0036 'X-RAY DIFFRACTION' 11 ? refined 27.7688 -27.3898 -5.1953 0.9240 1.0987 0.9312 -0.3889 0.1863 -0.0453 0.1663 0.0135 0.1101 0.0442 -0.1317 -0.0458 0.0044 -0.4569 -1.8999 1.2768 0.1272 0.6626 1.9716 -2.4082 -0.0011 'X-RAY DIFFRACTION' 12 ? refined 16.8673 -28.2926 1.3971 0.7358 1.8097 1.1768 0.0502 0.0250 -0.1050 0.0107 -0.0185 0.2113 -0.0733 0.0393 -0.0351 -1.7176 2.5127 -3.5594 -2.6828 0.5420 1.2876 1.9880 -0.4288 0.0074 'X-RAY DIFFRACTION' 13 ? refined 17.0891 -20.2343 -3.1971 0.4705 1.5720 0.8862 0.2173 -0.1918 -0.3500 0.3085 0.2177 0.2468 -0.1029 0.2636 -0.0295 -0.2171 -2.8637 0.3961 -0.1643 -0.6055 -0.9895 0.0123 -0.5276 0.0289 'X-RAY DIFFRACTION' 14 ? refined 20.4322 -12.9598 -5.4993 0.9989 1.5658 1.3561 0.3428 0.0373 0.1174 0.1302 0.7284 0.2473 0.2606 0.1803 -0.0074 -1.7691 -0.7895 0.2658 -1.4721 0.7448 2.8280 -0.6279 -0.7577 0.0089 'X-RAY DIFFRACTION' 15 ? refined 23.5729 -19.6425 -13.1572 1.3855 1.8061 0.8669 -0.4561 -0.1202 -0.0066 0.3258 0.0284 0.0236 0.0762 0.1159 0.0160 -0.2449 1.1116 0.3439 -3.9364 -0.4796 -1.6346 -0.4667 -0.4999 0.0287 'X-RAY DIFFRACTION' 16 ? refined 21.2125 -28.3011 -11.7942 0.7326 1.7639 1.3979 0.0666 0.2272 -0.4785 0.9057 1.1845 0.1034 1.0170 0.2578 0.1567 -0.4760 -0.1297 -2.3767 -0.6476 -0.7136 2.2951 -0.2464 -1.9677 0.0304 'X-RAY DIFFRACTION' 17 ? refined 32.6489 -20.3521 -10.8029 1.2989 1.4422 0.6986 -0.1631 0.2675 0.2272 0.0163 0.1305 0.5319 -0.0445 -0.0399 0.2387 -0.5081 -0.0078 -0.1470 -1.9656 0.0426 -0.4838 0.4121 -0.2167 -0.0268 'X-RAY DIFFRACTION' 18 ? refined 36.5310 -16.1756 -3.2393 0.9520 0.9622 2.1272 -0.1248 0.2361 0.1446 0.6948 -0.0327 0.1589 -0.1748 -0.3982 0.1022 2.2132 0.6783 0.7639 0.7536 -0.3797 -0.5230 0.3423 0.3807 -0.0020 'X-RAY DIFFRACTION' 19 ? refined 22.8433 -45.2598 17.8018 2.0610 1.3575 1.1672 -0.1086 0.4797 0.1234 0.1947 1.2946 0.0327 0.5874 0.1866 0.2492 -3.1726 1.2493 -2.9442 -2.7494 2.0767 -0.1284 2.7693 -1.1178 0.0016 'X-RAY DIFFRACTION' 20 ? refined 23.9601 -32.1910 5.3387 0.6710 1.1441 0.8206 -0.3484 0.0749 -0.0164 1.5140 2.7354 3.0680 0.3951 1.5198 -1.7034 0.3593 -0.2290 0.4679 -0.2935 0.0571 0.2282 1.4154 -1.5732 0.0016 'X-RAY DIFFRACTION' 21 ? refined 36.8309 -40.6053 -5.7709 1.3185 1.1724 1.2130 0.1398 0.3008 -0.2990 0.3115 0.2292 0.1724 -0.2794 0.3733 -0.2108 0.6662 0.2336 0.1552 -0.1292 0.3498 -2.3349 2.2228 -0.6664 0.0047 'X-RAY DIFFRACTION' 22 ? refined 29.0588 -41.2727 -7.3715 1.1577 1.3786 1.1183 0.1231 0.2627 -0.1409 2.6077 1.5726 0.6724 1.5676 0.0550 0.7586 0.8281 1.9334 -1.0497 0.2809 0.7547 0.6453 1.9015 -2.7940 0.0079 'X-RAY DIFFRACTION' 23 ? refined 26.6123 -36.6280 14.4888 1.0685 1.0884 1.0297 -0.1908 0.3473 0.1830 3.5534 2.7958 2.3070 2.7550 2.0358 0.3549 -0.2734 -0.3098 0.0602 -0.2388 0.7466 0.4221 2.6294 -1.3279 0.0005 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? '(chain A and resid 1:6)' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? '(chain A and resid 7:11)' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? '(chain A and resid 12:18)' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? '(chain A and resid 19:24)' 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? '(chain A and resid 25:31)' 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? '(chain A and resid 32:37)' 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? '(chain A and resid 38:43)' 'X-RAY DIFFRACTION' 8 8 ? ? ? ? ? ? ? ? ? '(chain A and resid 44:50)' 'X-RAY DIFFRACTION' 9 9 ? ? ? ? ? ? ? ? ? '(chain A and resid 51:55)' 'X-RAY DIFFRACTION' 10 10 ? ? ? ? ? ? ? ? ? '(chain A and resid 56:60)' 'X-RAY DIFFRACTION' 11 11 ? ? ? ? ? ? ? ? ? '(chain A and resid 61:66)' 'X-RAY DIFFRACTION' 12 12 ? ? ? ? ? ? ? ? ? '(chain A and resid 67:74)' 'X-RAY DIFFRACTION' 13 13 ? ? ? ? ? ? ? ? ? '(chain A and resid 75:79)' 'X-RAY DIFFRACTION' 14 14 ? ? ? ? ? ? ? ? ? '(chain A and resid 80:85)' 'X-RAY DIFFRACTION' 15 15 ? ? ? ? ? ? ? ? ? '(chain A and resid 86:91)' 'X-RAY DIFFRACTION' 16 16 ? ? ? ? ? ? ? ? ? '(chain A and resid 92:98)' 'X-RAY DIFFRACTION' 17 17 ? ? ? ? ? ? ? ? ? '(chain A and resid 99:103)' 'X-RAY DIFFRACTION' 18 18 ? ? ? ? ? ? ? ? ? '(chain A and resid 104:108)' 'X-RAY DIFFRACTION' 19 19 ? ? ? ? ? ? ? ? ? '(chain B and resid 1:4)' 'X-RAY DIFFRACTION' 20 20 ? ? ? ? ? ? ? ? ? '(chain B and resid 5:9)' 'X-RAY DIFFRACTION' 21 21 ? ? ? ? ? ? ? ? ? '(chain B and resid 10:13)' 'X-RAY DIFFRACTION' 22 22 ? ? ? ? ? ? ? ? ? '(chain C and resid 14:19)' 'X-RAY DIFFRACTION' 23 23 ? ? ? ? ? ? ? ? ? '(chain C and resid 20:26)' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine: 1.6.1_357)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C1'" B DC 3 ? ? "O4'" B DC 3 ? ? "C4'" B DC 3 ? ? 103.75 110.10 -6.35 1.00 N 2 1 "C3'" B DC 3 ? ? "C2'" B DC 3 ? ? "C1'" B DC 3 ? ? 97.09 102.40 -5.31 0.80 N 3 1 "O4'" B DC 3 ? ? "C1'" B DC 3 ? ? N1 B DC 3 ? ? 113.01 108.30 4.71 0.30 N 4 1 "C3'" B DT 9 ? ? "C2'" B DT 9 ? ? "C1'" B DT 9 ? ? 95.57 102.40 -6.83 0.80 N 5 1 "O4'" B DT 9 ? ? "C1'" B DT 9 ? ? N1 B DT 9 ? ? 113.98 108.30 5.68 0.30 N 6 1 C5 B DT 9 ? ? C4 B DT 9 ? ? O4 B DT 9 ? ? 120.67 124.90 -4.23 0.70 N 7 1 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 110.29 108.30 1.99 0.30 N 8 1 "C3'" B DA 13 ? ? "C2'" B DA 13 ? ? "C1'" B DA 13 ? ? 96.99 102.40 -5.41 0.80 N 9 1 "O4'" B DA 13 ? ? "C1'" B DA 13 ? ? N9 B DA 13 ? ? 110.54 108.30 2.24 0.30 N 10 1 "C3'" C DC 17 ? ? "C2'" C DC 17 ? ? "C1'" C DC 17 ? ? 96.63 102.40 -5.77 0.80 N 11 1 "O4'" C DC 21 ? ? "C4'" C DC 21 ? ? "C3'" C DC 21 ? ? 102.05 104.50 -2.45 0.40 N 12 1 "C3'" C DC 22 ? ? "C2'" C DC 22 ? ? "C1'" C DC 22 ? ? 97.04 102.40 -5.36 0.80 N 13 1 "O4'" C DT 24 ? ? "C1'" C DT 24 ? ? N1 C DT 24 ? ? 112.45 108.30 4.15 0.30 N 14 1 "O4'" C DG 26 ? ? "C1'" C DG 26 ? ? N9 C DG 26 ? ? 110.99 108.30 2.69 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 25 ? ? -9.39 -73.50 2 1 PRO A 50 ? ? -39.13 -27.44 3 1 GLU A 51 ? ? -104.02 54.86 4 1 SER A 72 ? ? 82.27 85.38 5 1 THR A 92 ? ? -68.26 -174.68 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 109 ? A GLY 109 2 1 Y 1 A SER 110 ? A SER 110 3 1 Y 1 A HIS 111 ? A HIS 111 4 1 Y 1 A HIS 112 ? A HIS 112 5 1 Y 1 A HIS 113 ? A HIS 113 6 1 Y 1 A HIS 114 ? A HIS 114 7 1 Y 1 A HIS 115 ? A HIS 115 8 1 Y 1 A HIS 116 ? A HIS 116 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BZG P P N N 74 BZG O1P O N N 75 BZG O2P O N N 76 BZG "O5'" O N N 77 BZG CZ1 C Y N 78 BZG CT1 C Y N 79 BZG CI C Y N 80 BZG CT2 C Y N 81 BZG CZ2 C Y N 82 BZG CE C Y N 83 BZG CW C N N 84 BZG OL O N N 85 BZG CK C Y N 86 BZG NJ N Y N 87 BZG CH C Y N 88 BZG NI N N N 89 BZG NG N Y N 90 BZG CF C Y N 91 BZG CM C Y N 92 BZG NN N Y N 93 BZG CO C Y N 94 BZG NE N Y N 95 BZG "CT'" C N R 96 BZG "OS'" O N N 97 BZG "CP'" C N N 98 BZG "C5'" C N N 99 BZG "C4'" C N R 100 BZG "C3'" C N S 101 BZG "O3'" O N N 102 BZG OXT O N N 103 BZG H1P H N N 104 BZG HOT H N N 105 BZG "H5'1" H N N 106 BZG "H5'2" H N N 107 BZG HZ1 H N N 108 BZG HT1 H N N 109 BZG HI H N N 110 BZG HT2 H N N 111 BZG HZ2 H N N 112 BZG HWC1 H N N 113 BZG HWC2 H N N 114 BZG HIN1 H N N 115 BZG HIN2 H N N 116 BZG HO H N N 117 BZG "HT'" H N N 118 BZG "HP'1" H N N 119 BZG "HP'2" H N N 120 BZG "H4'" H N N 121 BZG "H3'" H N N 122 BZG HA H N N 123 CYS N N N N 124 CYS CA C N R 125 CYS C C N N 126 CYS O O N N 127 CYS CB C N N 128 CYS SG S N N 129 CYS OXT O N N 130 CYS H H N N 131 CYS H2 H N N 132 CYS HA H N N 133 CYS HB2 H N N 134 CYS HB3 H N N 135 CYS HG H N N 136 CYS HXT H N N 137 DA OP3 O N N 138 DA P P N N 139 DA OP1 O N N 140 DA OP2 O N N 141 DA "O5'" O N N 142 DA "C5'" C N N 143 DA "C4'" C N R 144 DA "O4'" O N N 145 DA "C3'" C N S 146 DA "O3'" O N N 147 DA "C2'" C N N 148 DA "C1'" C N R 149 DA N9 N Y N 150 DA C8 C Y N 151 DA N7 N Y N 152 DA C5 C Y N 153 DA C6 C Y N 154 DA N6 N N N 155 DA N1 N Y N 156 DA C2 C Y N 157 DA N3 N Y N 158 DA C4 C Y N 159 DA HOP3 H N N 160 DA HOP2 H N N 161 DA "H5'" H N N 162 DA "H5''" H N N 163 DA "H4'" H N N 164 DA "H3'" H N N 165 DA "HO3'" H N N 166 DA "H2'" H N N 167 DA "H2''" H N N 168 DA "H1'" H N N 169 DA H8 H N N 170 DA H61 H N N 171 DA H62 H N N 172 DA H2 H N N 173 DC OP3 O N N 174 DC P P N N 175 DC OP1 O N N 176 DC OP2 O N N 177 DC "O5'" O N N 178 DC "C5'" C N N 179 DC "C4'" C N R 180 DC "O4'" O N N 181 DC "C3'" C N S 182 DC "O3'" O N N 183 DC "C2'" C N N 184 DC "C1'" C N R 185 DC N1 N N N 186 DC C2 C N N 187 DC O2 O N N 188 DC N3 N N N 189 DC C4 C N N 190 DC N4 N N N 191 DC C5 C N N 192 DC C6 C N N 193 DC HOP3 H N N 194 DC HOP2 H N N 195 DC "H5'" H N N 196 DC "H5''" H N N 197 DC "H4'" H N N 198 DC "H3'" H N N 199 DC "HO3'" H N N 200 DC "H2'" H N N 201 DC "H2''" H N N 202 DC "H1'" H N N 203 DC H41 H N N 204 DC H42 H N N 205 DC H5 H N N 206 DC H6 H N N 207 DG OP3 O N N 208 DG P P N N 209 DG OP1 O N N 210 DG OP2 O N N 211 DG "O5'" O N N 212 DG "C5'" C N N 213 DG "C4'" C N R 214 DG "O4'" O N N 215 DG "C3'" C N S 216 DG "O3'" O N N 217 DG "C2'" C N N 218 DG "C1'" C N R 219 DG N9 N Y N 220 DG C8 C Y N 221 DG N7 N Y N 222 DG C5 C Y N 223 DG C6 C N N 224 DG O6 O N N 225 DG N1 N N N 226 DG C2 C N N 227 DG N2 N N N 228 DG N3 N N N 229 DG C4 C Y N 230 DG HOP3 H N N 231 DG HOP2 H N N 232 DG "H5'" H N N 233 DG "H5''" H N N 234 DG "H4'" H N N 235 DG "H3'" H N N 236 DG "HO3'" H N N 237 DG "H2'" H N N 238 DG "H2''" H N N 239 DG "H1'" H N N 240 DG H8 H N N 241 DG H1 H N N 242 DG H21 H N N 243 DG H22 H N N 244 DT OP3 O N N 245 DT P P N N 246 DT OP1 O N N 247 DT OP2 O N N 248 DT "O5'" O N N 249 DT "C5'" C N N 250 DT "C4'" C N R 251 DT "O4'" O N N 252 DT "C3'" C N S 253 DT "O3'" O N N 254 DT "C2'" C N N 255 DT "C1'" C N R 256 DT N1 N N N 257 DT C2 C N N 258 DT O2 O N N 259 DT N3 N N N 260 DT C4 C N N 261 DT O4 O N N 262 DT C5 C N N 263 DT C7 C N N 264 DT C6 C N N 265 DT HOP3 H N N 266 DT HOP2 H N N 267 DT "H5'" H N N 268 DT "H5''" H N N 269 DT "H4'" H N N 270 DT "H3'" H N N 271 DT "HO3'" H N N 272 DT "H2'" H N N 273 DT "H2''" H N N 274 DT "H1'" H N N 275 DT H3 H N N 276 DT H71 H N N 277 DT H72 H N N 278 DT H73 H N N 279 DT H6 H N N 280 GLN N N N N 281 GLN CA C N S 282 GLN C C N N 283 GLN O O N N 284 GLN CB C N N 285 GLN CG C N N 286 GLN CD C N N 287 GLN OE1 O N N 288 GLN NE2 N N N 289 GLN OXT O N N 290 GLN H H N N 291 GLN H2 H N N 292 GLN HA H N N 293 GLN HB2 H N N 294 GLN HB3 H N N 295 GLN HG2 H N N 296 GLN HG3 H N N 297 GLN HE21 H N N 298 GLN HE22 H N N 299 GLN HXT H N N 300 GLU N N N N 301 GLU CA C N S 302 GLU C C N N 303 GLU O O N N 304 GLU CB C N N 305 GLU CG C N N 306 GLU CD C N N 307 GLU OE1 O N N 308 GLU OE2 O N N 309 GLU OXT O N N 310 GLU H H N N 311 GLU H2 H N N 312 GLU HA H N N 313 GLU HB2 H N N 314 GLU HB3 H N N 315 GLU HG2 H N N 316 GLU HG3 H N N 317 GLU HE2 H N N 318 GLU HXT H N N 319 GLY N N N N 320 GLY CA C N N 321 GLY C C N N 322 GLY O O N N 323 GLY OXT O N N 324 GLY H H N N 325 GLY H2 H N N 326 GLY HA2 H N N 327 GLY HA3 H N N 328 GLY HXT H N N 329 HIS N N N N 330 HIS CA C N S 331 HIS C C N N 332 HIS O O N N 333 HIS CB C N N 334 HIS CG C Y N 335 HIS ND1 N Y N 336 HIS CD2 C Y N 337 HIS CE1 C Y N 338 HIS NE2 N Y N 339 HIS OXT O N N 340 HIS H H N N 341 HIS H2 H N N 342 HIS HA H N N 343 HIS HB2 H N N 344 HIS HB3 H N N 345 HIS HD1 H N N 346 HIS HD2 H N N 347 HIS HE1 H N N 348 HIS HE2 H N N 349 HIS HXT H N N 350 ILE N N N N 351 ILE CA C N S 352 ILE C C N N 353 ILE O O N N 354 ILE CB C N S 355 ILE CG1 C N N 356 ILE CG2 C N N 357 ILE CD1 C N N 358 ILE OXT O N N 359 ILE H H N N 360 ILE H2 H N N 361 ILE HA H N N 362 ILE HB H N N 363 ILE HG12 H N N 364 ILE HG13 H N N 365 ILE HG21 H N N 366 ILE HG22 H N N 367 ILE HG23 H N N 368 ILE HD11 H N N 369 ILE HD12 H N N 370 ILE HD13 H N N 371 ILE HXT H N N 372 LEU N N N N 373 LEU CA C N S 374 LEU C C N N 375 LEU O O N N 376 LEU CB C N N 377 LEU CG C N N 378 LEU CD1 C N N 379 LEU CD2 C N N 380 LEU OXT O N N 381 LEU H H N N 382 LEU H2 H N N 383 LEU HA H N N 384 LEU HB2 H N N 385 LEU HB3 H N N 386 LEU HG H N N 387 LEU HD11 H N N 388 LEU HD12 H N N 389 LEU HD13 H N N 390 LEU HD21 H N N 391 LEU HD22 H N N 392 LEU HD23 H N N 393 LEU HXT H N N 394 LYS N N N N 395 LYS CA C N S 396 LYS C C N N 397 LYS O O N N 398 LYS CB C N N 399 LYS CG C N N 400 LYS CD C N N 401 LYS CE C N N 402 LYS NZ N N N 403 LYS OXT O N N 404 LYS H H N N 405 LYS H2 H N N 406 LYS HA H N N 407 LYS HB2 H N N 408 LYS HB3 H N N 409 LYS HG2 H N N 410 LYS HG3 H N N 411 LYS HD2 H N N 412 LYS HD3 H N N 413 LYS HE2 H N N 414 LYS HE3 H N N 415 LYS HZ1 H N N 416 LYS HZ2 H N N 417 LYS HZ3 H N N 418 LYS HXT H N N 419 MET N N N N 420 MET CA C N S 421 MET C C N N 422 MET O O N N 423 MET CB C N N 424 MET CG C N N 425 MET SD S N N 426 MET CE C N N 427 MET OXT O N N 428 MET H H N N 429 MET H2 H N N 430 MET HA H N N 431 MET HB2 H N N 432 MET HB3 H N N 433 MET HG2 H N N 434 MET HG3 H N N 435 MET HE1 H N N 436 MET HE2 H N N 437 MET HE3 H N N 438 MET HXT H N N 439 PHE N N N N 440 PHE CA C N S 441 PHE C C N N 442 PHE O O N N 443 PHE CB C N N 444 PHE CG C Y N 445 PHE CD1 C Y N 446 PHE CD2 C Y N 447 PHE CE1 C Y N 448 PHE CE2 C Y N 449 PHE CZ C Y N 450 PHE OXT O N N 451 PHE H H N N 452 PHE H2 H N N 453 PHE HA H N N 454 PHE HB2 H N N 455 PHE HB3 H N N 456 PHE HD1 H N N 457 PHE HD2 H N N 458 PHE HE1 H N N 459 PHE HE2 H N N 460 PHE HZ H N N 461 PHE HXT H N N 462 PRO N N N N 463 PRO CA C N S 464 PRO C C N N 465 PRO O O N N 466 PRO CB C N N 467 PRO CG C N N 468 PRO CD C N N 469 PRO OXT O N N 470 PRO H H N N 471 PRO HA H N N 472 PRO HB2 H N N 473 PRO HB3 H N N 474 PRO HG2 H N N 475 PRO HG3 H N N 476 PRO HD2 H N N 477 PRO HD3 H N N 478 PRO HXT H N N 479 SER N N N N 480 SER CA C N S 481 SER C C N N 482 SER O O N N 483 SER CB C N N 484 SER OG O N N 485 SER OXT O N N 486 SER H H N N 487 SER H2 H N N 488 SER HA H N N 489 SER HB2 H N N 490 SER HB3 H N N 491 SER HG H N N 492 SER HXT H N N 493 THR N N N N 494 THR CA C N S 495 THR C C N N 496 THR O O N N 497 THR CB C N R 498 THR OG1 O N N 499 THR CG2 C N N 500 THR OXT O N N 501 THR H H N N 502 THR H2 H N N 503 THR HA H N N 504 THR HB H N N 505 THR HG1 H N N 506 THR HG21 H N N 507 THR HG22 H N N 508 THR HG23 H N N 509 THR HXT H N N 510 TRP N N N N 511 TRP CA C N S 512 TRP C C N N 513 TRP O O N N 514 TRP CB C N N 515 TRP CG C Y N 516 TRP CD1 C Y N 517 TRP CD2 C Y N 518 TRP NE1 N Y N 519 TRP CE2 C Y N 520 TRP CE3 C Y N 521 TRP CZ2 C Y N 522 TRP CZ3 C Y N 523 TRP CH2 C Y N 524 TRP OXT O N N 525 TRP H H N N 526 TRP H2 H N N 527 TRP HA H N N 528 TRP HB2 H N N 529 TRP HB3 H N N 530 TRP HD1 H N N 531 TRP HE1 H N N 532 TRP HE3 H N N 533 TRP HZ2 H N N 534 TRP HZ3 H N N 535 TRP HH2 H N N 536 TRP HXT H N N 537 TYR N N N N 538 TYR CA C N S 539 TYR C C N N 540 TYR O O N N 541 TYR CB C N N 542 TYR CG C Y N 543 TYR CD1 C Y N 544 TYR CD2 C Y N 545 TYR CE1 C Y N 546 TYR CE2 C Y N 547 TYR CZ C Y N 548 TYR OH O N N 549 TYR OXT O N N 550 TYR H H N N 551 TYR H2 H N N 552 TYR HA H N N 553 TYR HB2 H N N 554 TYR HB3 H N N 555 TYR HD1 H N N 556 TYR HD2 H N N 557 TYR HE1 H N N 558 TYR HE2 H N N 559 TYR HH H N N 560 TYR HXT H N N 561 VAL N N N N 562 VAL CA C N S 563 VAL C C N N 564 VAL O O N N 565 VAL CB C N N 566 VAL CG1 C N N 567 VAL CG2 C N N 568 VAL OXT O N N 569 VAL H H N N 570 VAL H2 H N N 571 VAL HA H N N 572 VAL HB H N N 573 VAL HG11 H N N 574 VAL HG12 H N N 575 VAL HG13 H N N 576 VAL HG21 H N N 577 VAL HG22 H N N 578 VAL HG23 H N N 579 VAL HXT H N N 580 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BZG P O1P sing N N 70 BZG P O2P doub N N 71 BZG P "O5'" sing N N 72 BZG P OXT sing N N 73 BZG O1P H1P sing N N 74 BZG "O5'" "C5'" sing N N 75 BZG CZ1 CT1 sing Y N 76 BZG CZ1 CE doub Y N 77 BZG CZ1 HZ1 sing N N 78 BZG CT1 CI doub Y N 79 BZG CT1 HT1 sing N N 80 BZG CI CT2 sing Y N 81 BZG CI HI sing N N 82 BZG CT2 CZ2 doub Y N 83 BZG CT2 HT2 sing N N 84 BZG CZ2 CE sing Y N 85 BZG CZ2 HZ2 sing N N 86 BZG CE CW sing N N 87 BZG CW OL sing N N 88 BZG CW HWC1 sing N N 89 BZG CW HWC2 sing N N 90 BZG OL CK sing N N 91 BZG CK NJ sing Y N 92 BZG CK CM doub Y N 93 BZG NJ CH doub Y N 94 BZG CH NI sing N N 95 BZG CH NG sing Y N 96 BZG NI HIN1 sing N N 97 BZG NI HIN2 sing N N 98 BZG NG CF doub Y N 99 BZG CF CM sing Y N 100 BZG CF NE sing Y N 101 BZG CM NN sing Y N 102 BZG NN CO doub Y N 103 BZG CO NE sing Y N 104 BZG CO HO sing N N 105 BZG NE "CT'" sing N N 106 BZG "CT'" "OS'" sing N N 107 BZG "CT'" "CP'" sing N N 108 BZG "CT'" "HT'" sing N N 109 BZG "OS'" "C4'" sing N N 110 BZG "CP'" "C3'" sing N N 111 BZG "CP'" "HP'1" sing N N 112 BZG "CP'" "HP'2" sing N N 113 BZG "C5'" "C4'" sing N N 114 BZG "C5'" "H5'1" sing N N 115 BZG "C5'" "H5'2" sing N N 116 BZG "C4'" "C3'" sing N N 117 BZG "C4'" "H4'" sing N N 118 BZG "C3'" "O3'" sing N N 119 BZG "C3'" "H3'" sing N N 120 BZG "O3'" HA sing N N 121 BZG OXT HOT sing N N 122 CYS N CA sing N N 123 CYS N H sing N N 124 CYS N H2 sing N N 125 CYS CA C sing N N 126 CYS CA CB sing N N 127 CYS CA HA sing N N 128 CYS C O doub N N 129 CYS C OXT sing N N 130 CYS CB SG sing N N 131 CYS CB HB2 sing N N 132 CYS CB HB3 sing N N 133 CYS SG HG sing N N 134 CYS OXT HXT sing N N 135 DA OP3 P sing N N 136 DA OP3 HOP3 sing N N 137 DA P OP1 doub N N 138 DA P OP2 sing N N 139 DA P "O5'" sing N N 140 DA OP2 HOP2 sing N N 141 DA "O5'" "C5'" sing N N 142 DA "C5'" "C4'" sing N N 143 DA "C5'" "H5'" sing N N 144 DA "C5'" "H5''" sing N N 145 DA "C4'" "O4'" sing N N 146 DA "C4'" "C3'" sing N N 147 DA "C4'" "H4'" sing N N 148 DA "O4'" "C1'" sing N N 149 DA "C3'" "O3'" sing N N 150 DA "C3'" "C2'" sing N N 151 DA "C3'" "H3'" sing N N 152 DA "O3'" "HO3'" sing N N 153 DA "C2'" "C1'" sing N N 154 DA "C2'" "H2'" sing N N 155 DA "C2'" "H2''" sing N N 156 DA "C1'" N9 sing N N 157 DA "C1'" "H1'" sing N N 158 DA N9 C8 sing Y N 159 DA N9 C4 sing Y N 160 DA C8 N7 doub Y N 161 DA C8 H8 sing N N 162 DA N7 C5 sing Y N 163 DA C5 C6 sing Y N 164 DA C5 C4 doub Y N 165 DA C6 N6 sing N N 166 DA C6 N1 doub Y N 167 DA N6 H61 sing N N 168 DA N6 H62 sing N N 169 DA N1 C2 sing Y N 170 DA C2 N3 doub Y N 171 DA C2 H2 sing N N 172 DA N3 C4 sing Y N 173 DC OP3 P sing N N 174 DC OP3 HOP3 sing N N 175 DC P OP1 doub N N 176 DC P OP2 sing N N 177 DC P "O5'" sing N N 178 DC OP2 HOP2 sing N N 179 DC "O5'" "C5'" sing N N 180 DC "C5'" "C4'" sing N N 181 DC "C5'" "H5'" sing N N 182 DC "C5'" "H5''" sing N N 183 DC "C4'" "O4'" sing N N 184 DC "C4'" "C3'" sing N N 185 DC "C4'" "H4'" sing N N 186 DC "O4'" "C1'" sing N N 187 DC "C3'" "O3'" sing N N 188 DC "C3'" "C2'" sing N N 189 DC "C3'" "H3'" sing N N 190 DC "O3'" "HO3'" sing N N 191 DC "C2'" "C1'" sing N N 192 DC "C2'" "H2'" sing N N 193 DC "C2'" "H2''" sing N N 194 DC "C1'" N1 sing N N 195 DC "C1'" "H1'" sing N N 196 DC N1 C2 sing N N 197 DC N1 C6 sing N N 198 DC C2 O2 doub N N 199 DC C2 N3 sing N N 200 DC N3 C4 doub N N 201 DC C4 N4 sing N N 202 DC C4 C5 sing N N 203 DC N4 H41 sing N N 204 DC N4 H42 sing N N 205 DC C5 C6 doub N N 206 DC C5 H5 sing N N 207 DC C6 H6 sing N N 208 DG OP3 P sing N N 209 DG OP3 HOP3 sing N N 210 DG P OP1 doub N N 211 DG P OP2 sing N N 212 DG P "O5'" sing N N 213 DG OP2 HOP2 sing N N 214 DG "O5'" "C5'" sing N N 215 DG "C5'" "C4'" sing N N 216 DG "C5'" "H5'" sing N N 217 DG "C5'" "H5''" sing N N 218 DG "C4'" "O4'" sing N N 219 DG "C4'" "C3'" sing N N 220 DG "C4'" "H4'" sing N N 221 DG "O4'" "C1'" sing N N 222 DG "C3'" "O3'" sing N N 223 DG "C3'" "C2'" sing N N 224 DG "C3'" "H3'" sing N N 225 DG "O3'" "HO3'" sing N N 226 DG "C2'" "C1'" sing N N 227 DG "C2'" "H2'" sing N N 228 DG "C2'" "H2''" sing N N 229 DG "C1'" N9 sing N N 230 DG "C1'" "H1'" sing N N 231 DG N9 C8 sing Y N 232 DG N9 C4 sing Y N 233 DG C8 N7 doub Y N 234 DG C8 H8 sing N N 235 DG N7 C5 sing Y N 236 DG C5 C6 sing N N 237 DG C5 C4 doub Y N 238 DG C6 O6 doub N N 239 DG C6 N1 sing N N 240 DG N1 C2 sing N N 241 DG N1 H1 sing N N 242 DG C2 N2 sing N N 243 DG C2 N3 doub N N 244 DG N2 H21 sing N N 245 DG N2 H22 sing N N 246 DG N3 C4 sing N N 247 DT OP3 P sing N N 248 DT OP3 HOP3 sing N N 249 DT P OP1 doub N N 250 DT P OP2 sing N N 251 DT P "O5'" sing N N 252 DT OP2 HOP2 sing N N 253 DT "O5'" "C5'" sing N N 254 DT "C5'" "C4'" sing N N 255 DT "C5'" "H5'" sing N N 256 DT "C5'" "H5''" sing N N 257 DT "C4'" "O4'" sing N N 258 DT "C4'" "C3'" sing N N 259 DT "C4'" "H4'" sing N N 260 DT "O4'" "C1'" sing N N 261 DT "C3'" "O3'" sing N N 262 DT "C3'" "C2'" sing N N 263 DT "C3'" "H3'" sing N N 264 DT "O3'" "HO3'" sing N N 265 DT "C2'" "C1'" sing N N 266 DT "C2'" "H2'" sing N N 267 DT "C2'" "H2''" sing N N 268 DT "C1'" N1 sing N N 269 DT "C1'" "H1'" sing N N 270 DT N1 C2 sing N N 271 DT N1 C6 sing N N 272 DT C2 O2 doub N N 273 DT C2 N3 sing N N 274 DT N3 C4 sing N N 275 DT N3 H3 sing N N 276 DT C4 O4 doub N N 277 DT C4 C5 sing N N 278 DT C5 C7 sing N N 279 DT C5 C6 doub N N 280 DT C7 H71 sing N N 281 DT C7 H72 sing N N 282 DT C7 H73 sing N N 283 DT C6 H6 sing N N 284 GLN N CA sing N N 285 GLN N H sing N N 286 GLN N H2 sing N N 287 GLN CA C sing N N 288 GLN CA CB sing N N 289 GLN CA HA sing N N 290 GLN C O doub N N 291 GLN C OXT sing N N 292 GLN CB CG sing N N 293 GLN CB HB2 sing N N 294 GLN CB HB3 sing N N 295 GLN CG CD sing N N 296 GLN CG HG2 sing N N 297 GLN CG HG3 sing N N 298 GLN CD OE1 doub N N 299 GLN CD NE2 sing N N 300 GLN NE2 HE21 sing N N 301 GLN NE2 HE22 sing N N 302 GLN OXT HXT sing N N 303 GLU N CA sing N N 304 GLU N H sing N N 305 GLU N H2 sing N N 306 GLU CA C sing N N 307 GLU CA CB sing N N 308 GLU CA HA sing N N 309 GLU C O doub N N 310 GLU C OXT sing N N 311 GLU CB CG sing N N 312 GLU CB HB2 sing N N 313 GLU CB HB3 sing N N 314 GLU CG CD sing N N 315 GLU CG HG2 sing N N 316 GLU CG HG3 sing N N 317 GLU CD OE1 doub N N 318 GLU CD OE2 sing N N 319 GLU OE2 HE2 sing N N 320 GLU OXT HXT sing N N 321 GLY N CA sing N N 322 GLY N H sing N N 323 GLY N H2 sing N N 324 GLY CA C sing N N 325 GLY CA HA2 sing N N 326 GLY CA HA3 sing N N 327 GLY C O doub N N 328 GLY C OXT sing N N 329 GLY OXT HXT sing N N 330 HIS N CA sing N N 331 HIS N H sing N N 332 HIS N H2 sing N N 333 HIS CA C sing N N 334 HIS CA CB sing N N 335 HIS CA HA sing N N 336 HIS C O doub N N 337 HIS C OXT sing N N 338 HIS CB CG sing N N 339 HIS CB HB2 sing N N 340 HIS CB HB3 sing N N 341 HIS CG ND1 sing Y N 342 HIS CG CD2 doub Y N 343 HIS ND1 CE1 doub Y N 344 HIS ND1 HD1 sing N N 345 HIS CD2 NE2 sing Y N 346 HIS CD2 HD2 sing N N 347 HIS CE1 NE2 sing Y N 348 HIS CE1 HE1 sing N N 349 HIS NE2 HE2 sing N N 350 HIS OXT HXT sing N N 351 ILE N CA sing N N 352 ILE N H sing N N 353 ILE N H2 sing N N 354 ILE CA C sing N N 355 ILE CA CB sing N N 356 ILE CA HA sing N N 357 ILE C O doub N N 358 ILE C OXT sing N N 359 ILE CB CG1 sing N N 360 ILE CB CG2 sing N N 361 ILE CB HB sing N N 362 ILE CG1 CD1 sing N N 363 ILE CG1 HG12 sing N N 364 ILE CG1 HG13 sing N N 365 ILE CG2 HG21 sing N N 366 ILE CG2 HG22 sing N N 367 ILE CG2 HG23 sing N N 368 ILE CD1 HD11 sing N N 369 ILE CD1 HD12 sing N N 370 ILE CD1 HD13 sing N N 371 ILE OXT HXT sing N N 372 LEU N CA sing N N 373 LEU N H sing N N 374 LEU N H2 sing N N 375 LEU CA C sing N N 376 LEU CA CB sing N N 377 LEU CA HA sing N N 378 LEU C O doub N N 379 LEU C OXT sing N N 380 LEU CB CG sing N N 381 LEU CB HB2 sing N N 382 LEU CB HB3 sing N N 383 LEU CG CD1 sing N N 384 LEU CG CD2 sing N N 385 LEU CG HG sing N N 386 LEU CD1 HD11 sing N N 387 LEU CD1 HD12 sing N N 388 LEU CD1 HD13 sing N N 389 LEU CD2 HD21 sing N N 390 LEU CD2 HD22 sing N N 391 LEU CD2 HD23 sing N N 392 LEU OXT HXT sing N N 393 LYS N CA sing N N 394 LYS N H sing N N 395 LYS N H2 sing N N 396 LYS CA C sing N N 397 LYS CA CB sing N N 398 LYS CA HA sing N N 399 LYS C O doub N N 400 LYS C OXT sing N N 401 LYS CB CG sing N N 402 LYS CB HB2 sing N N 403 LYS CB HB3 sing N N 404 LYS CG CD sing N N 405 LYS CG HG2 sing N N 406 LYS CG HG3 sing N N 407 LYS CD CE sing N N 408 LYS CD HD2 sing N N 409 LYS CD HD3 sing N N 410 LYS CE NZ sing N N 411 LYS CE HE2 sing N N 412 LYS CE HE3 sing N N 413 LYS NZ HZ1 sing N N 414 LYS NZ HZ2 sing N N 415 LYS NZ HZ3 sing N N 416 LYS OXT HXT sing N N 417 MET N CA sing N N 418 MET N H sing N N 419 MET N H2 sing N N 420 MET CA C sing N N 421 MET CA CB sing N N 422 MET CA HA sing N N 423 MET C O doub N N 424 MET C OXT sing N N 425 MET CB CG sing N N 426 MET CB HB2 sing N N 427 MET CB HB3 sing N N 428 MET CG SD sing N N 429 MET CG HG2 sing N N 430 MET CG HG3 sing N N 431 MET SD CE sing N N 432 MET CE HE1 sing N N 433 MET CE HE2 sing N N 434 MET CE HE3 sing N N 435 MET OXT HXT sing N N 436 PHE N CA sing N N 437 PHE N H sing N N 438 PHE N H2 sing N N 439 PHE CA C sing N N 440 PHE CA CB sing N N 441 PHE CA HA sing N N 442 PHE C O doub N N 443 PHE C OXT sing N N 444 PHE CB CG sing N N 445 PHE CB HB2 sing N N 446 PHE CB HB3 sing N N 447 PHE CG CD1 doub Y N 448 PHE CG CD2 sing Y N 449 PHE CD1 CE1 sing Y N 450 PHE CD1 HD1 sing N N 451 PHE CD2 CE2 doub Y N 452 PHE CD2 HD2 sing N N 453 PHE CE1 CZ doub Y N 454 PHE CE1 HE1 sing N N 455 PHE CE2 CZ sing Y N 456 PHE CE2 HE2 sing N N 457 PHE CZ HZ sing N N 458 PHE OXT HXT sing N N 459 PRO N CA sing N N 460 PRO N CD sing N N 461 PRO N H sing N N 462 PRO CA C sing N N 463 PRO CA CB sing N N 464 PRO CA HA sing N N 465 PRO C O doub N N 466 PRO C OXT sing N N 467 PRO CB CG sing N N 468 PRO CB HB2 sing N N 469 PRO CB HB3 sing N N 470 PRO CG CD sing N N 471 PRO CG HG2 sing N N 472 PRO CG HG3 sing N N 473 PRO CD HD2 sing N N 474 PRO CD HD3 sing N N 475 PRO OXT HXT sing N N 476 SER N CA sing N N 477 SER N H sing N N 478 SER N H2 sing N N 479 SER CA C sing N N 480 SER CA CB sing N N 481 SER CA HA sing N N 482 SER C O doub N N 483 SER C OXT sing N N 484 SER CB OG sing N N 485 SER CB HB2 sing N N 486 SER CB HB3 sing N N 487 SER OG HG sing N N 488 SER OXT HXT sing N N 489 THR N CA sing N N 490 THR N H sing N N 491 THR N H2 sing N N 492 THR CA C sing N N 493 THR CA CB sing N N 494 THR CA HA sing N N 495 THR C O doub N N 496 THR C OXT sing N N 497 THR CB OG1 sing N N 498 THR CB CG2 sing N N 499 THR CB HB sing N N 500 THR OG1 HG1 sing N N 501 THR CG2 HG21 sing N N 502 THR CG2 HG22 sing N N 503 THR CG2 HG23 sing N N 504 THR OXT HXT sing N N 505 TRP N CA sing N N 506 TRP N H sing N N 507 TRP N H2 sing N N 508 TRP CA C sing N N 509 TRP CA CB sing N N 510 TRP CA HA sing N N 511 TRP C O doub N N 512 TRP C OXT sing N N 513 TRP CB CG sing N N 514 TRP CB HB2 sing N N 515 TRP CB HB3 sing N N 516 TRP CG CD1 doub Y N 517 TRP CG CD2 sing Y N 518 TRP CD1 NE1 sing Y N 519 TRP CD1 HD1 sing N N 520 TRP CD2 CE2 doub Y N 521 TRP CD2 CE3 sing Y N 522 TRP NE1 CE2 sing Y N 523 TRP NE1 HE1 sing N N 524 TRP CE2 CZ2 sing Y N 525 TRP CE3 CZ3 doub Y N 526 TRP CE3 HE3 sing N N 527 TRP CZ2 CH2 doub Y N 528 TRP CZ2 HZ2 sing N N 529 TRP CZ3 CH2 sing Y N 530 TRP CZ3 HZ3 sing N N 531 TRP CH2 HH2 sing N N 532 TRP OXT HXT sing N N 533 TYR N CA sing N N 534 TYR N H sing N N 535 TYR N H2 sing N N 536 TYR CA C sing N N 537 TYR CA CB sing N N 538 TYR CA HA sing N N 539 TYR C O doub N N 540 TYR C OXT sing N N 541 TYR CB CG sing N N 542 TYR CB HB2 sing N N 543 TYR CB HB3 sing N N 544 TYR CG CD1 doub Y N 545 TYR CG CD2 sing Y N 546 TYR CD1 CE1 sing Y N 547 TYR CD1 HD1 sing N N 548 TYR CD2 CE2 doub Y N 549 TYR CD2 HD2 sing N N 550 TYR CE1 CZ doub Y N 551 TYR CE1 HE1 sing N N 552 TYR CE2 CZ sing Y N 553 TYR CE2 HE2 sing N N 554 TYR CZ OH sing N N 555 TYR OH HH sing N N 556 TYR OXT HXT sing N N 557 VAL N CA sing N N 558 VAL N H sing N N 559 VAL N H2 sing N N 560 VAL CA C sing N N 561 VAL CA CB sing N N 562 VAL CA HA sing N N 563 VAL C O doub N N 564 VAL C OXT sing N N 565 VAL CB CG1 sing N N 566 VAL CB CG2 sing N N 567 VAL CB HB sing N N 568 VAL CG1 HG11 sing N N 569 VAL CG1 HG12 sing N N 570 VAL CG1 HG13 sing N N 571 VAL CG2 HG21 sing N N 572 VAL CG2 HG22 sing N N 573 VAL CG2 HG23 sing N N 574 VAL OXT HXT sing N N 575 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4ENM 'double helix' 4ENM 'b-form double helix' 4ENM 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 2 1_555 C DG 13 1_555 -0.563 0.095 0.861 -11.394 -4.364 -5.974 1 B_DC2:DG26_C B 2 ? C 26 ? 19 1 1 B DC 3 1_555 C DG 12 1_555 -0.525 0.310 0.426 -5.703 0.959 -11.269 2 B_DC3:DG25_C B 3 ? C 25 ? ? 1 1 B DA 4 1_555 C DT 11 1_555 -0.374 0.268 0.540 8.275 6.306 2.164 3 B_DA4:DT24_C B 4 ? C 24 ? 20 1 1 B DT 5 1_555 C DA 10 1_555 -0.390 -0.151 0.113 7.184 -11.506 -1.809 4 B_DT5:DA23_C B 5 ? C 23 ? 20 1 1 B DG 6 1_555 C DC 9 1_555 -0.388 -0.142 -0.036 9.793 1.780 -3.842 5 B_DG6:DC22_C B 6 ? C 22 ? 19 1 1 B DC 8 1_555 C DG 7 1_555 -1.158 -0.334 -0.261 -6.437 -3.726 -0.039 6 B_DC8:DG20_C B 8 ? C 20 ? 19 1 1 B DT 9 1_555 C DA 6 1_555 -0.376 2.858 0.223 -6.844 -5.952 -102.427 7 B_DT9:DA19_C B 9 ? C 19 ? ? ? 1 B DA 10 1_555 C DT 5 1_555 0.586 0.242 -0.039 4.642 -10.194 10.203 8 B_DA10:DT18_C B 10 ? C 18 ? ? ? 1 B DG 11 1_555 C DC 4 1_555 0.263 -0.162 0.042 -2.599 -8.576 1.248 9 B_DG11:DC17_C B 11 ? C 17 ? 19 1 1 B DT 12 1_555 C DA 3 1_555 0.247 -0.041 -0.090 1.179 -12.853 7.760 10 B_DT12:DA16_C B 12 ? C 16 ? 20 1 1 B DA 13 1_555 C DT 2 1_555 0.616 -0.095 0.272 10.076 -7.224 -13.171 11 B_DA13:DT15_C B 13 ? C 15 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 2 1_555 C DG 13 1_555 B DC 3 1_555 C DG 12 1_555 0.128 -0.868 3.094 5.788 4.986 33.186 -2.224 0.640 2.917 8.588 -9.971 34.030 1 BB_DC2DC3:DG25DG26_CC B 2 ? C 26 ? B 3 ? C 25 ? 1 B DC 3 1_555 C DG 12 1_555 B DA 4 1_555 C DT 11 1_555 -0.102 -0.409 2.792 -4.315 7.986 35.084 -1.605 -0.348 2.633 12.981 7.015 36.203 2 BB_DC3DA4:DT24DG25_CC B 3 ? C 25 ? B 4 ? C 24 ? 1 B DA 4 1_555 C DT 11 1_555 B DT 5 1_555 C DA 10 1_555 -0.377 -1.073 3.390 3.403 -1.943 30.408 -1.632 1.411 3.390 -3.686 -6.454 30.654 3 BB_DA4DT5:DA23DT24_CC B 4 ? C 24 ? B 5 ? C 23 ? 1 B DT 5 1_555 C DA 10 1_555 B DG 6 1_555 C DC 9 1_555 0.791 0.655 3.329 2.556 6.534 33.337 0.030 -0.925 3.442 11.235 -4.395 34.047 4 BB_DT5DG6:DC22DA23_CC B 5 ? C 23 ? B 6 ? C 22 ? 1 B DC 8 1_555 C DG 7 1_555 B DT 9 1_555 C DA 6 1_555 0.383 -1.652 3.116 1.237 6.175 81.685 -1.406 -0.263 3.012 4.715 -0.945 81.885 5 BB_DC8DT9:DA19DG20_CC B 8 ? C 20 ? B 9 ? C 19 ? 1 B DT 9 1_555 C DA 6 1_555 B DA 10 1_555 C DT 5 1_555 0.448 2.161 3.415 -0.120 -0.963 -9.085 -11.236 2.521 3.629 6.054 -0.753 -9.136 6 BB_DT9DA10:DT18DA19_CC B 9 ? C 19 ? B 10 ? C 18 ? 1 B DA 10 1_555 C DT 5 1_555 B DG 11 1_555 C DC 4 1_555 -0.133 -0.426 3.473 -2.536 2.297 33.191 -1.146 -0.214 3.437 4.008 4.424 33.362 7 BB_DA10DG11:DC17DT18_CC B 10 ? C 18 ? B 11 ? C 17 ? 1 B DG 11 1_555 C DC 4 1_555 B DT 12 1_555 C DA 3 1_555 0.152 -0.220 3.114 2.661 1.364 31.705 -0.637 0.185 3.104 2.490 -4.856 31.842 8 BB_DG11DT12:DA16DC17_CC B 11 ? C 17 ? B 12 ? C 16 ? 1 B DT 12 1_555 C DA 3 1_555 B DA 13 1_555 C DT 2 1_555 -0.957 -0.618 3.128 -2.459 1.643 35.608 -1.236 1.218 3.154 2.682 4.012 35.726 9 BB_DT12DA13:DT15DA16_CC B 12 ? C 16 ? B 13 ? C 15 ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3GVA _pdbx_initial_refinement_model.details 'PDB ENTRY 3GVA' #