HEADER TRANSFERASE/INHIBITOR 13-APR-12 4ENX TITLE CRYSTAL STRUCTURE OF PIM-1 KINASE IN COMPLEX WITH INHIBITOR (2E,5Z)-2- TITLE 2 (2-CHLOROPHENYLIMINO)-5-(4-HYDROXY-3-NITROBENZYLIDENE)THIAZOLIDIN-4- TITLE 3 ONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PIM-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PROTEIN KINASE DOMAIN, UNP RESIDUES 120-404; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PIM1; SOURCE 6 EXPRESSION_SYSTEM: CELL-FREE PROTEIN SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PCR2.1-TOPO KEYWDS PIM-1 KINASE, TRANSFERASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.J.PARKER,N.HANDA,S.YOKOYAMA REVDAT 3 08-NOV-23 4ENX 1 REMARK SEQADV REVDAT 2 03-OCT-12 4ENX 1 JRNL REVDAT 1 08-AUG-12 4ENX 0 JRNL AUTH L.J.PARKER,H.WATANABE,K.TSUGANEZAWA,Y.TOMABECHI,N.HANDA, JRNL AUTH 2 M.SHIROUZU,H.YUKI,T.HONMA,N.OGAWA,T.NAGANO,S.YOKOYAMA, JRNL AUTH 3 A.TANAKA JRNL TITL FLEXIBILITY OF THE P-LOOP OF PIM-1 KINASE: OBSERVATION OF A JRNL TITL 2 NOVEL CONFORMATION INDUCED BY INTERACTION WITH AN INHIBITOR JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 68 860 2012 JRNL REFN ESSN 1744-3091 JRNL PMID 22869110 JRNL DOI 10.1107/S1744309112027108 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 10762 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 544 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.7771 - 4.4422 1.00 2588 130 0.1816 0.1997 REMARK 3 2 4.4422 - 3.5274 1.00 2556 131 0.1657 0.2125 REMARK 3 3 3.5274 - 3.0819 1.00 2540 143 0.2004 0.2709 REMARK 3 4 3.0819 - 2.8003 1.00 2534 140 0.2558 0.2980 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 30.59 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.61820 REMARK 3 B22 (A**2) : 2.61820 REMARK 3 B33 (A**2) : -5.23640 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2248 REMARK 3 ANGLE : 0.891 3052 REMARK 3 CHIRALITY : 0.058 322 REMARK 3 PLANARITY : 0.003 395 REMARK 3 DIHEDRAL : 13.147 820 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 37:61) REMARK 3 ORIGIN FOR THE GROUP (A): -42.9382 6.9813 -2.5774 REMARK 3 T TENSOR REMARK 3 T11: 0.7098 T22: 0.1264 REMARK 3 T33: 0.3293 T12: 0.0407 REMARK 3 T13: 0.0462 T23: 0.0223 REMARK 3 L TENSOR REMARK 3 L11: 9.0424 L22: 6.3637 REMARK 3 L33: 6.8751 L12: 0.3482 REMARK 3 L13: 4.6552 L23: 0.7015 REMARK 3 S TENSOR REMARK 3 S11: 0.2722 S12: 0.7966 S13: 0.5995 REMARK 3 S21: -0.4137 S22: -0.3221 S23: 0.5514 REMARK 3 S31: -0.0060 S32: 0.3997 S33: -0.1117 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 62:87) REMARK 3 ORIGIN FOR THE GROUP (A): -30.5281 1.3770 -7.7860 REMARK 3 T TENSOR REMARK 3 T11: 0.4768 T22: 0.4019 REMARK 3 T33: 0.2905 T12: -0.1201 REMARK 3 T13: 0.0701 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 2.1783 L22: 6.3891 REMARK 3 L33: 4.9574 L12: -2.6657 REMARK 3 L13: 0.0611 L23: -0.2753 REMARK 3 S TENSOR REMARK 3 S11: -0.0651 S12: 0.0777 S13: -0.0791 REMARK 3 S21: -0.1706 S22: -0.1727 S23: -0.5212 REMARK 3 S31: -0.5085 S32: 1.0286 S33: 0.2241 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 88:105) REMARK 3 ORIGIN FOR THE GROUP (A): -39.2166 -7.8137 -11.8545 REMARK 3 T TENSOR REMARK 3 T11: 0.6199 T22: 0.3130 REMARK 3 T33: 0.2670 T12: -0.0172 REMARK 3 T13: 0.0348 T23: 0.0412 REMARK 3 L TENSOR REMARK 3 L11: 1.9993 L22: 6.8917 REMARK 3 L33: 7.2403 L12: 1.3645 REMARK 3 L13: -7.3452 L23: -0.7338 REMARK 3 S TENSOR REMARK 3 S11: -0.4826 S12: 1.6282 S13: -0.0096 REMARK 3 S21: -1.0417 S22: 0.3632 S23: 0.1006 REMARK 3 S31: 0.1320 S32: -0.6552 S33: 0.1867 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 106:160) REMARK 3 ORIGIN FOR THE GROUP (A): -43.8645 -8.9090 -1.2634 REMARK 3 T TENSOR REMARK 3 T11: 0.2312 T22: 0.1616 REMARK 3 T33: 0.2263 T12: 0.0444 REMARK 3 T13: 0.0207 T23: -0.0218 REMARK 3 L TENSOR REMARK 3 L11: 1.6007 L22: 4.1995 REMARK 3 L33: 2.2371 L12: 1.0085 REMARK 3 L13: 0.7367 L23: -0.8721 REMARK 3 S TENSOR REMARK 3 S11: 0.0414 S12: 0.0207 S13: 0.2091 REMARK 3 S21: -0.0815 S22: 0.0315 S23: 0.1715 REMARK 3 S31: -0.4065 S32: -0.0460 S33: -0.1001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 161:204) REMARK 3 ORIGIN FOR THE GROUP (A): -36.4423 -12.4844 -3.2554 REMARK 3 T TENSOR REMARK 3 T11: 0.3350 T22: 0.1395 REMARK 3 T33: 0.1642 T12: -0.0304 REMARK 3 T13: 0.0334 T23: 0.0273 REMARK 3 L TENSOR REMARK 3 L11: 5.4289 L22: 2.0795 REMARK 3 L33: 3.4152 L12: -0.7801 REMARK 3 L13: -0.5069 L23: 0.9257 REMARK 3 S TENSOR REMARK 3 S11: 0.0188 S12: 0.0301 S13: 0.2513 REMARK 3 S21: -0.0861 S22: -0.0499 S23: -0.0556 REMARK 3 S31: -0.3871 S32: 0.1951 S33: 0.0499 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 205:219) REMARK 3 ORIGIN FOR THE GROUP (A): -23.9609 -20.9868 3.1335 REMARK 3 T TENSOR REMARK 3 T11: 0.2948 T22: 0.4173 REMARK 3 T33: 0.2368 T12: 0.0368 REMARK 3 T13: -0.0470 T23: -0.0296 REMARK 3 L TENSOR REMARK 3 L11: 6.9452 L22: 6.5673 REMARK 3 L33: 5.1385 L12: -0.0862 REMARK 3 L13: -4.6357 L23: 2.2263 REMARK 3 S TENSOR REMARK 3 S11: 0.0968 S12: -0.3499 S13: 0.1553 REMARK 3 S21: 0.3918 S22: 0.1698 S23: -0.6354 REMARK 3 S31: 0.0981 S32: 0.5274 S33: -0.2995 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 220:250) REMARK 3 ORIGIN FOR THE GROUP (A): -34.2851 -21.8219 8.8306 REMARK 3 T TENSOR REMARK 3 T11: 0.2298 T22: 0.2627 REMARK 3 T33: 0.1952 T12: -0.0373 REMARK 3 T13: 0.0130 T23: -0.0393 REMARK 3 L TENSOR REMARK 3 L11: 6.1933 L22: 4.3987 REMARK 3 L33: 3.1859 L12: -1.8342 REMARK 3 L13: 0.3153 L23: -2.6378 REMARK 3 S TENSOR REMARK 3 S11: 0.0202 S12: -0.6228 S13: -0.0945 REMARK 3 S21: 0.0655 S22: 0.2045 S23: -0.0510 REMARK 3 S31: -0.2827 S32: 0.4227 S33: -0.1922 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 251:290) REMARK 3 ORIGIN FOR THE GROUP (A): -40.0960 -29.9913 5.2154 REMARK 3 T TENSOR REMARK 3 T11: 0.2848 T22: 0.1368 REMARK 3 T33: 0.2720 T12: 0.0317 REMARK 3 T13: -0.0419 T23: -0.0131 REMARK 3 L TENSOR REMARK 3 L11: 4.8393 L22: 3.4551 REMARK 3 L33: 5.3184 L12: -0.0476 REMARK 3 L13: 0.1078 L23: -0.2405 REMARK 3 S TENSOR REMARK 3 S11: 0.0761 S12: 0.0959 S13: -0.5176 REMARK 3 S21: -0.3217 S22: 0.1159 S23: 0.0207 REMARK 3 S31: 0.7879 S32: 0.0071 S33: -0.1623 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 291:305) REMARK 3 ORIGIN FOR THE GROUP (A): -58.4529 -18.1259 1.5928 REMARK 3 T TENSOR REMARK 3 T11: 0.2420 T22: 0.4546 REMARK 3 T33: 0.3718 T12: 0.0880 REMARK 3 T13: -0.0413 T23: 0.1346 REMARK 3 L TENSOR REMARK 3 L11: 9.0505 L22: 5.3146 REMARK 3 L33: 8.1106 L12: 4.4383 REMARK 3 L13: -0.3827 L23: 3.5403 REMARK 3 S TENSOR REMARK 3 S11: -0.1641 S12: 0.3212 S13: 0.2950 REMARK 3 S21: -0.8478 S22: -0.0905 S23: 0.7306 REMARK 3 S31: -0.7706 S32: -0.8843 S33: 0.3619 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ENX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000071853. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.25 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10791 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 31.782 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 22.70 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : 0.08600 REMARK 200 FOR THE DATA SET : 40.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 22.60 REMARK 200 R MERGE FOR SHELL (I) : 0.38500 REMARK 200 R SYM FOR SHELL (I) : 0.38500 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: 3UMX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM CITRATE BUFFER, PH 5.5, 200MM REMARK 280 NACL, 1M NH4HPO4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.96067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.98033 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.47050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 13.49017 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.45083 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 28 REMARK 465 LYS A 29 REMARK 465 GLU A 30 REMARK 465 LYS A 31 REMARK 465 GLU A 32 REMARK 465 PRO A 33 REMARK 465 LEU A 34 REMARK 465 GLU A 35 REMARK 465 SER A 36 REMARK 465 PRO A 81 REMARK 465 ASN A 82 REMARK 465 GLY A 83 REMARK 465 SER A 306 REMARK 465 LEU A 307 REMARK 465 SER A 308 REMARK 465 PRO A 309 REMARK 465 GLY A 310 REMARK 465 PRO A 311 REMARK 465 SER A 312 REMARK 465 LYS A 313 REMARK 465 SER A 314 REMARK 465 GLY A 315 REMARK 465 PRO A 316 REMARK 465 SER A 317 REMARK 465 SER A 318 REMARK 465 GLY A 319 REMARK 465 GLU A 320 REMARK 465 ASN A 321 REMARK 465 LEU A 322 REMARK 465 TYR A 323 REMARK 465 PHE A 324 REMARK 465 GLN A 325 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 79 CG CD OE1 OE2 REMARK 470 LEU A 80 CG CD1 CD2 REMARK 470 THR A 84 OG1 CG2 REMARK 470 ARG A 105 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 98 -167.54 -163.01 REMARK 500 ASP A 167 42.64 -157.84 REMARK 500 ASP A 176 98.69 -66.07 REMARK 500 ASP A 186 87.82 56.93 REMARK 500 ASP A 202 41.24 -141.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE Z20 A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UMW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PIM1 KINASE IN COMPLEX WITH INHIBITOR (Z)-2- REMARK 900 [(1H-INDAZOL-3-YL)METHYLENE]-6-METHOXY-7-(PIPERAZIN-1-YLMETHYL) REMARK 900 BENZOFURAN-3(2H)-ONE REMARK 900 RELATED ID: 3UMX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PIM1 KINASE IN COMPLEX WITH INHIBITOR (Z)-2- REMARK 900 [(1H-INDOL-3-YL)METHYLENE]-7-(AZEPAN-1-YLMETHYL)-6- REMARK 900 HYDROXYBENZOFURAN-3(2H)-ONE REMARK 900 RELATED ID: 3UIX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PIM1 KINASE IN COMPLEX WITH SMALL MOLECULE REMARK 900 INHIBITOR REMARK 900 RELATED ID: 4ENY RELATED DB: PDB DBREF 4ENX A 29 313 UNP P11309 PIM1_HUMAN 120 404 SEQADV 4ENX MET A 28 UNP P11309 EXPRESSION TAG SEQADV 4ENX SER A 314 UNP P11309 EXPRESSION TAG SEQADV 4ENX GLY A 315 UNP P11309 EXPRESSION TAG SEQADV 4ENX PRO A 316 UNP P11309 EXPRESSION TAG SEQADV 4ENX SER A 317 UNP P11309 EXPRESSION TAG SEQADV 4ENX SER A 318 UNP P11309 EXPRESSION TAG SEQADV 4ENX GLY A 319 UNP P11309 EXPRESSION TAG SEQADV 4ENX GLU A 320 UNP P11309 EXPRESSION TAG SEQADV 4ENX ASN A 321 UNP P11309 EXPRESSION TAG SEQADV 4ENX LEU A 322 UNP P11309 EXPRESSION TAG SEQADV 4ENX TYR A 323 UNP P11309 EXPRESSION TAG SEQADV 4ENX PHE A 324 UNP P11309 EXPRESSION TAG SEQADV 4ENX GLN A 325 UNP P11309 EXPRESSION TAG SEQRES 1 A 298 MET LYS GLU LYS GLU PRO LEU GLU SER GLN TYR GLN VAL SEQRES 2 A 298 GLY PRO LEU LEU GLY SER GLY GLY PHE GLY SER VAL TYR SEQRES 3 A 298 SER GLY ILE ARG VAL SER ASP ASN LEU PRO VAL ALA ILE SEQRES 4 A 298 LYS HIS VAL GLU LYS ASP ARG ILE SER ASP TRP GLY GLU SEQRES 5 A 298 LEU PRO ASN GLY THR ARG VAL PRO MET GLU VAL VAL LEU SEQRES 6 A 298 LEU LYS LYS VAL SER SER GLY PHE SER GLY VAL ILE ARG SEQRES 7 A 298 LEU LEU ASP TRP PHE GLU ARG PRO ASP SER PHE VAL LEU SEQRES 8 A 298 ILE LEU GLU ARG PRO GLU PRO VAL GLN ASP LEU PHE ASP SEQRES 9 A 298 PHE ILE THR GLU ARG GLY ALA LEU GLN GLU GLU LEU ALA SEQRES 10 A 298 ARG SER PHE PHE TRP GLN VAL LEU GLU ALA VAL ARG HIS SEQRES 11 A 298 CYS HIS ASN CYS GLY VAL LEU HIS ARG ASP ILE LYS ASP SEQRES 12 A 298 GLU ASN ILE LEU ILE ASP LEU ASN ARG GLY GLU LEU LYS SEQRES 13 A 298 LEU ILE ASP PHE GLY SER GLY ALA LEU LEU LYS ASP THR SEQRES 14 A 298 VAL TYR THR ASP PHE ASP GLY THR ARG VAL TYR SER PRO SEQRES 15 A 298 PRO GLU TRP ILE ARG TYR HIS ARG TYR HIS GLY ARG SER SEQRES 16 A 298 ALA ALA VAL TRP SER LEU GLY ILE LEU LEU TYR ASP MET SEQRES 17 A 298 VAL CYS GLY ASP ILE PRO PHE GLU HIS ASP GLU GLU ILE SEQRES 18 A 298 ILE ARG GLY GLN VAL PHE PHE ARG GLN ARG VAL SER SER SEQRES 19 A 298 GLU CYS GLN HIS LEU ILE ARG TRP CYS LEU ALA LEU ARG SEQRES 20 A 298 PRO SER ASP ARG PRO THR PHE GLU GLU ILE GLN ASN HIS SEQRES 21 A 298 PRO TRP MET GLN ASP VAL LEU LEU PRO GLN GLU THR ALA SEQRES 22 A 298 GLU ILE HIS LEU HIS SER LEU SER PRO GLY PRO SER LYS SEQRES 23 A 298 SER GLY PRO SER SER GLY GLU ASN LEU TYR PHE GLN HET PO4 A 401 5 HET Z20 A 402 25 HETNAM PO4 PHOSPHATE ION HETNAM Z20 (2Z,5Z)-2-[(2-CHLOROPHENYL)IMINO]-5-(4-HYDROXY-3- HETNAM 2 Z20 NITROBENZYLIDENE)-1,3-THIAZOLIDIN-4-ONE FORMUL 2 PO4 O4 P 3- FORMUL 3 Z20 C16 H10 CL N3 O4 S FORMUL 4 HOH *55(H2 O) HELIX 1 1 ASP A 72 ILE A 74 5 3 HELIX 2 2 MET A 88 SER A 97 1 10 HELIX 3 3 LEU A 129 GLY A 137 1 9 HELIX 4 4 GLN A 140 CYS A 161 1 22 HELIX 5 5 LYS A 169 GLU A 171 5 3 HELIX 6 6 THR A 204 SER A 208 5 5 HELIX 7 7 PRO A 209 HIS A 216 1 8 HELIX 8 8 HIS A 219 GLY A 238 1 20 HELIX 9 9 HIS A 244 GLY A 251 1 8 HELIX 10 10 SER A 260 LEU A 271 1 12 HELIX 11 11 ARG A 274 ARG A 278 5 5 HELIX 12 12 THR A 280 ASN A 286 1 7 HELIX 13 13 HIS A 287 GLN A 291 5 5 HELIX 14 14 LEU A 295 LEU A 304 1 10 SHEET 1 A 5 TYR A 38 GLY A 47 0 SHEET 2 A 5 GLY A 50 ARG A 57 -1 O SER A 54 N GLY A 41 SHEET 3 A 5 LEU A 62 GLU A 70 -1 O HIS A 68 N SER A 51 SHEET 4 A 5 SER A 115 GLU A 121 -1 O LEU A 118 N LYS A 67 SHEET 5 A 5 LEU A 106 GLU A 111 -1 N PHE A 110 O VAL A 117 SHEET 1 B 2 TRP A 77 GLY A 78 0 SHEET 2 B 2 VAL A 86 PRO A 87 -1 O VAL A 86 N GLY A 78 SHEET 1 C 3 VAL A 126 ASP A 128 0 SHEET 2 C 3 ILE A 173 ASP A 176 -1 O ILE A 175 N GLN A 127 SHEET 3 C 3 GLU A 181 LEU A 184 -1 O LYS A 183 N LEU A 174 SHEET 1 D 2 VAL A 163 LEU A 164 0 SHEET 2 D 2 ALA A 191 LEU A 192 -1 O ALA A 191 N LEU A 164 CISPEP 1 GLU A 124 PRO A 125 0 0.00 SITE 1 AC1 4 ARG A 156 ARG A 258 SER A 260 SER A 261 SITE 1 AC2 14 LEU A 44 GLY A 45 SER A 46 PHE A 49 SITE 2 AC2 14 GLY A 50 VAL A 52 ALA A 65 LYS A 67 SITE 3 AC2 14 LEU A 120 GLU A 121 ARG A 122 LEU A 174 SITE 4 AC2 14 ASP A 186 HOH A 545 CRYST1 97.074 97.074 80.941 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010301 0.005947 0.000000 0.00000 SCALE2 0.000000 0.011895 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012355 0.00000