HEADER TRANSCRIPTION/DNA 15-APR-12 4EOT TITLE CRYSTAL STRUCTURE OF THE MAFA HOMODIMER BOUND TO THE CONSENSUS MARE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION FACTOR MAFA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DNA-BINDING DOMAIN (UNP RESIDUES 226-318); COMPND 5 SYNONYM: PANCREATIC BETA-CELL-SPECIFIC TRANSCRIPTIONAL ACTIVATOR, COMPND 6 TRANSCRIPTION FACTOR RIPE3B1, V-MAF MUSCULOAPONEUROTIC FIBROSARCOMA COMPND 7 ONCOGENE HOMOLOG A; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: 5'-D(*CP*CP*GP*GP*TP*GP*CP*TP*GP*AP*GP*TP*CP*AP*GP*CP*AP*GP COMPND 11 *G)-3'; COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: MAF-RESPONSE ELEMENT (MARE) UPPER STRAND; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: 5'-D(*CP*CP*CP*TP*GP*CP*TP*GP*AP*CP*TP*CP*AP*GP*CP*AP*CP*CP COMPND 17 *G)-3'; COMPND 18 CHAIN: D; COMPND 19 ENGINEERED: YES; COMPND 20 OTHER_DETAILS: MAF-RESPONSE ELEMENT (MARE) BOTTOM STRAND SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAFA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 MOL_ID: 3; SOURCE 11 SYNTHETIC: YES KEYWDS LEUCINE ZIPPER, TRANSCRIPTION FACTOR, DNA BINDING, NUCLEUS, KEYWDS 2 TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.LU,G.GUANGA,C.WAN,R.B.ROSE REVDAT 3 13-SEP-23 4EOT 1 REMARK SEQADV REVDAT 2 26-DEC-12 4EOT 1 JRNL REVDAT 1 28-NOV-12 4EOT 0 JRNL AUTH X.LU,G.P.GUANGA,C.WAN,R.B.ROSE JRNL TITL A NOVEL DNA BINDING MECHANISM FOR MAF BASIC REGION-LEUCINE JRNL TITL 2 ZIPPER FACTORS INFERRED FROM A MAFA-DNA COMPLEX STRUCTURE JRNL TITL 3 AND BINDING SPECIFICITIES. JRNL REF BIOCHEMISTRY V. 51 9706 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 23148532 JRNL DOI 10.1021/BI301248J REMARK 2 REMARK 2 RESOLUTION. 2.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.020 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 15288 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 768 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9720 - 4.8638 1.00 3071 162 0.2303 0.2491 REMARK 3 2 4.8638 - 3.8698 1.00 2964 156 0.2020 0.2420 REMARK 3 3 3.8698 - 3.3833 0.98 2899 155 0.2111 0.2956 REMARK 3 4 3.3833 - 3.0752 0.99 2889 153 0.1972 0.2269 REMARK 3 5 3.0752 - 2.8550 0.91 2697 142 0.3124 0.3957 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 81.00 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.27820 REMARK 3 B22 (A**2) : 0.27820 REMARK 3 B33 (A**2) : -0.55640 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2266 REMARK 3 ANGLE : 0.696 3211 REMARK 3 CHIRALITY : 0.036 364 REMARK 3 PLANARITY : 0.001 280 REMARK 3 DIHEDRAL : 22.463 888 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -46.4835 17.7656 -19.4154 REMARK 3 T TENSOR REMARK 3 T11: 0.7526 T22: 0.2876 REMARK 3 T33: 0.3744 T12: -0.0068 REMARK 3 T13: -0.0741 T23: 0.0644 REMARK 3 L TENSOR REMARK 3 L11: 0.3736 L22: 3.8577 REMARK 3 L33: 5.7450 L12: -0.1938 REMARK 3 L13: -0.0318 L23: 4.1774 REMARK 3 S TENSOR REMARK 3 S11: 0.1067 S12: 0.1262 S13: 0.1692 REMARK 3 S21: -0.5870 S22: -0.4158 S23: 0.1731 REMARK 3 S31: -0.4946 S32: 0.0565 S33: 0.2599 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -42.2017 0.9015 -11.4022 REMARK 3 T TENSOR REMARK 3 T11: 0.7464 T22: 0.3376 REMARK 3 T33: 0.2815 T12: 0.0804 REMARK 3 T13: -0.0121 T23: 0.0736 REMARK 3 L TENSOR REMARK 3 L11: 1.3263 L22: 0.6045 REMARK 3 L33: 6.2783 L12: 0.1033 REMARK 3 L13: -1.1638 L23: 0.8020 REMARK 3 S TENSOR REMARK 3 S11: 0.1158 S12: -0.1978 S13: -0.1352 REMARK 3 S21: 0.0576 S22: -0.2867 S23: 0.0183 REMARK 3 S31: 0.3595 S32: 0.7220 S33: 0.3048 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -48.7784 17.7927 -0.5718 REMARK 3 T TENSOR REMARK 3 T11: 0.8824 T22: 0.3999 REMARK 3 T33: 0.7192 T12: -0.5122 REMARK 3 T13: 0.0969 T23: -0.2313 REMARK 3 L TENSOR REMARK 3 L11: 2.2790 L22: 4.0795 REMARK 3 L33: 1.2085 L12: 0.2563 REMARK 3 L13: 0.0561 L23: -0.5365 REMARK 3 S TENSOR REMARK 3 S11: -0.0827 S12: -0.0699 S13: 0.1786 REMARK 3 S21: -0.1490 S22: -0.0072 S23: -0.2650 REMARK 3 S31: -0.1720 S32: 0.2315 S33: -0.0112 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): -48.3734 15.8863 -0.1199 REMARK 3 T TENSOR REMARK 3 T11: 0.5695 T22: 0.1278 REMARK 3 T33: 0.5885 T12: -0.3896 REMARK 3 T13: -0.0149 T23: -0.1355 REMARK 3 L TENSOR REMARK 3 L11: 1.0739 L22: 1.8035 REMARK 3 L33: 1.6085 L12: -0.2452 REMARK 3 L13: 0.3267 L23: 1.1120 REMARK 3 S TENSOR REMARK 3 S11: -0.0100 S12: -0.1659 S13: 0.5003 REMARK 3 S21: 0.0953 S22: -0.2086 S23: -0.1180 REMARK 3 S31: -0.2442 S32: 0.1022 S33: -0.1923 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4EOT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000071885. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15793 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.855 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.5500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.1 REMARK 200 DATA REDUNDANCY IN SHELL : 9.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.030 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3A5T REMARK 200 REMARK 200 REMARK: RMEASURE = 0.073 (0.798) REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2 M AMMONIUM SULFATE, 100 MM SODIUM REMARK 280 ACETATE, PH 4.5, ONE WEEK OF GROWTH, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.36000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.72000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 56.72000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 28.36000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -98.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 224 REMARK 465 SER A 225 REMARK 465 ALA A 318 REMARK 465 GLY B 224 REMARK 465 SER B 225 REMARK 465 ARG B 226 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 226 NE CZ NH1 NH2 REMARK 470 PHE A 227 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 230 CG OD1 OD2 REMARK 470 GLN A 231 CG CD OE1 NE2 REMARK 470 ARG A 238 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 240 CD1 CD2 REMARK 470 ARG A 242 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 245 CZ NH1 NH2 REMARK 470 GLU A 250 CG CD OE1 OE2 REMARK 470 GLU A 251 CD OE1 OE2 REMARK 470 ARG A 254 CD NE CZ NH1 NH2 REMARK 470 LEU A 255 CG CD1 CD2 REMARK 470 LYS A 256 CD CE NZ REMARK 470 GLN A 257 CD OE1 NE2 REMARK 470 LYS A 258 CD CE NZ REMARK 470 LYS A 263 CD CE NZ REMARK 470 LYS A 274 CG CD CE NZ REMARK 470 GLN A 278 CD OE1 NE2 REMARK 470 ARG A 279 CD NE CZ NH1 NH2 REMARK 470 GLU A 283 CD OE1 OE2 REMARK 470 GLN A 288 CG CD OE1 NE2 REMARK 470 LYS A 297 CD CE NZ REMARK 470 LYS A 305 CD CE NZ REMARK 470 GLU A 306 OE1 OE2 REMARK 470 LEU A 309 CD1 CD2 REMARK 470 LYS A 311 CG CD CE NZ REMARK 470 GLU A 312 CG CD OE1 OE2 REMARK 470 LYS A 313 CD CE NZ REMARK 470 GLU A 315 CG CD OE1 OE2 REMARK 470 LYS A 316 CG CD CE NZ REMARK 470 LEU A 317 CG CD1 CD2 REMARK 470 ARG B 238 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 239 CD OE1 OE2 REMARK 470 ARG B 242 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 243 CD OE1 NE2 REMARK 470 LEU B 244 CG CD1 CD2 REMARK 470 ARG B 245 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 249 CG CD CE NZ REMARK 470 GLU B 250 CD OE1 OE2 REMARK 470 ILE B 253 CD1 REMARK 470 ARG B 254 NE CZ NH1 NH2 REMARK 470 LYS B 256 CD CE NZ REMARK 470 GLN B 269 CG CD OE1 NE2 REMARK 470 GLN B 277 CD OE1 NE2 REMARK 470 GLU B 283 CG CD OE1 OE2 REMARK 470 GLN B 288 CG CD OE1 NE2 REMARK 470 GLU B 294 CD OE1 OE2 REMARK 470 GLN B 295 CG CD OE1 NE2 REMARK 470 LEU B 298 CD1 CD2 REMARK 470 GLU B 299 CD OE1 OE2 REMARK 470 ARG B 302 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 305 CD CE NZ REMARK 470 GLU B 306 CG CD OE1 OE2 REMARK 470 LEU B 309 CG CD1 CD2 REMARK 470 LYS B 313 CD CE NZ REMARK 470 LYS B 316 CG CD CE NZ REMARK 470 LEU B 317 CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C 15 C3' - C2' - C1' ANGL. DEV. = -5.5 DEGREES REMARK 500 DG C 15 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DG D 14 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 401 DBREF 4EOT A 226 318 UNP Q8NHW3 MAFA_HUMAN 226 318 DBREF 4EOT B 226 318 UNP Q8NHW3 MAFA_HUMAN 226 318 DBREF 4EOT C 1 19 PDB 4EOT 4EOT 1 19 DBREF 4EOT D 1 19 PDB 4EOT 4EOT 1 19 SEQADV 4EOT GLY A 224 UNP Q8NHW3 EXPRESSION TAG SEQADV 4EOT SER A 225 UNP Q8NHW3 EXPRESSION TAG SEQADV 4EOT GLY B 224 UNP Q8NHW3 EXPRESSION TAG SEQADV 4EOT SER B 225 UNP Q8NHW3 EXPRESSION TAG SEQRES 1 A 95 GLY SER ARG PHE SER ASP ASP GLN LEU VAL SER MET SER SEQRES 2 A 95 VAL ARG GLU LEU ASN ARG GLN LEU ARG GLY PHE SER LYS SEQRES 3 A 95 GLU GLU VAL ILE ARG LEU LYS GLN LYS ARG ARG THR LEU SEQRES 4 A 95 LYS ASN ARG GLY TYR ALA GLN SER CYS ARG PHE LYS ARG SEQRES 5 A 95 VAL GLN GLN ARG HIS ILE LEU GLU SER GLU LYS CYS GLN SEQRES 6 A 95 LEU GLN SER GLN VAL GLU GLN LEU LYS LEU GLU VAL GLY SEQRES 7 A 95 ARG LEU ALA LYS GLU ARG ASP LEU TYR LYS GLU LYS TYR SEQRES 8 A 95 GLU LYS LEU ALA SEQRES 1 B 95 GLY SER ARG PHE SER ASP ASP GLN LEU VAL SER MET SER SEQRES 2 B 95 VAL ARG GLU LEU ASN ARG GLN LEU ARG GLY PHE SER LYS SEQRES 3 B 95 GLU GLU VAL ILE ARG LEU LYS GLN LYS ARG ARG THR LEU SEQRES 4 B 95 LYS ASN ARG GLY TYR ALA GLN SER CYS ARG PHE LYS ARG SEQRES 5 B 95 VAL GLN GLN ARG HIS ILE LEU GLU SER GLU LYS CYS GLN SEQRES 6 B 95 LEU GLN SER GLN VAL GLU GLN LEU LYS LEU GLU VAL GLY SEQRES 7 B 95 ARG LEU ALA LYS GLU ARG ASP LEU TYR LYS GLU LYS TYR SEQRES 8 B 95 GLU LYS LEU ALA SEQRES 1 C 19 DC DC DG DG DT DG DC DT DG DA DG DT DC SEQRES 2 C 19 DA DG DC DA DG DG SEQRES 1 D 19 DC DC DC DT DG DC DT DG DA DC DT DC DA SEQRES 2 D 19 DG DC DA DC DC DG HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 B 401 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 3(O4 S 2-) FORMUL 8 HOH *4(H2 O) HELIX 1 1 SER A 228 MET A 235 1 8 HELIX 2 2 SER A 236 LEU A 244 1 9 HELIX 3 3 SER A 248 LEU A 317 1 70 HELIX 4 4 SER B 228 MET B 235 1 8 HELIX 5 5 SER B 236 LEU B 244 1 9 HELIX 6 6 SER B 248 LEU B 317 1 70 SITE 1 AC1 2 ASP A 229 ARG A 265 SITE 1 AC2 5 ARG A 272 ARG A 275 ARG B 272 ARG B 275 SITE 2 AC2 5 DC D 10 SITE 1 AC3 3 ARG A 302 ARG B 307 LYS B 311 CRYST1 116.100 116.100 85.080 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008613 0.004973 0.000000 0.00000 SCALE2 0.000000 0.009946 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011754 0.00000