HEADER LIGASE 17-APR-12 4EPL
TITLE CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA GH3.11 (JAR1) IN COMPLEX
TITLE 2 WITH JA-ILE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: JASMONIC ACID-AMIDO SYNTHETASE JAR1;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: JASMONATE-AMINO ACID SYNTHETASE JAR1, PROTEIN FAR-RED
COMPND 5 INSENSITIVE 219, PROTEIN JASMONATE RESISTANT 1;
COMPND 6 EC: 6.3.2.-;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA;
SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS;
SOURCE 4 ORGANISM_TAXID: 3702;
SOURCE 5 GENE: JAR1, FIN219, AT2G46370, F11C10.6;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A
KEYWDS ANL ADENYLATING ENZYME, ACYL ACID-AMIDO SYNTHETASE, ADENYLATION,
KEYWDS 2 LIGASE
EXPDTA X-RAY DIFFRACTION
AUTHOR C.S.WESTFALL,C.ZUBIETA,J.HERRMANN,U.KAPP,M.H.NANAO,J.M.JEZ
REVDAT 3 28-FEB-24 4EPL 1 REMARK SEQADV
REVDAT 2 25-JUL-12 4EPL 1 JRNL
REVDAT 1 20-JUN-12 4EPL 0
JRNL AUTH C.S.WESTFALL,C.ZUBIETA,J.HERRMANN,U.KAPP,M.H.NANAO,J.M.JEZ
JRNL TITL STRUCTURAL BASIS FOR PRERECEPTOR MODULATION OF PLANT
JRNL TITL 2 HORMONES BY GH3 PROTEINS.
JRNL REF SCIENCE V. 336 1708 2012
JRNL REFN ISSN 0036-8075
JRNL PMID 22628555
JRNL DOI 10.1126/SCIENCE.1221863
REMARK 2
REMARK 2 RESOLUTION. 2.01 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.2_432)
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.50
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5
REMARK 3 NUMBER OF REFLECTIONS : 43725
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.171
REMARK 3 R VALUE (WORKING SET) : 0.169
REMARK 3 FREE R VALUE : 0.210
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030
REMARK 3 FREE R VALUE TEST SET COUNT : 2201
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 47.5155 - 5.0554 0.99 2743 161 0.1708 0.2038
REMARK 3 2 5.0554 - 4.0133 1.00 2664 143 0.1380 0.1583
REMARK 3 3 4.0133 - 3.5062 1.00 2639 142 0.1463 0.1869
REMARK 3 4 3.5062 - 3.1857 1.00 2617 135 0.1665 0.1966
REMARK 3 5 3.1857 - 2.9574 1.00 2621 134 0.1819 0.2271
REMARK 3 6 2.9574 - 2.7830 1.00 2598 142 0.1944 0.2222
REMARK 3 7 2.7830 - 2.6437 1.00 2599 127 0.1886 0.2547
REMARK 3 8 2.6437 - 2.5286 1.00 2591 139 0.1866 0.2414
REMARK 3 9 2.5286 - 2.4312 1.00 2612 125 0.1755 0.2576
REMARK 3 10 2.4312 - 2.3474 1.00 2582 123 0.1691 0.2065
REMARK 3 11 2.3474 - 2.2740 1.00 2592 140 0.1751 0.2336
REMARK 3 12 2.2740 - 2.2090 1.00 2600 122 0.1758 0.2107
REMARK 3 13 2.2090 - 2.1508 1.00 2551 153 0.1768 0.2158
REMARK 3 14 2.1508 - 2.0983 1.00 2590 145 0.1812 0.2641
REMARK 3 15 2.0983 - 2.0506 1.00 2539 142 0.2090 0.3022
REMARK 3 16 2.0506 - 2.0070 0.93 2386 128 0.2115 0.2484
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.20
REMARK 3 SHRINKAGE RADIUS : 0.98
REMARK 3 K_SOL : 0.38
REMARK 3 B_SOL : 46.01
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.410
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 4.49410
REMARK 3 B22 (A**2) : -0.33630
REMARK 3 B33 (A**2) : -4.15780
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.007 4501
REMARK 3 ANGLE : 1.025 6106
REMARK 3 CHIRALITY : 0.070 689
REMARK 3 PLANARITY : 0.004 789
REMARK 3 DIHEDRAL : 13.069 1668
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 4
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 7:135)
REMARK 3 ORIGIN FOR THE GROUP (A): 33.3654 -11.9867 -29.9280
REMARK 3 T TENSOR
REMARK 3 T11: 0.2513 T22: 0.1784
REMARK 3 T33: 0.1796 T12: 0.0131
REMARK 3 T13: -0.0177 T23: 0.0416
REMARK 3 L TENSOR
REMARK 3 L11: 2.1847 L22: 1.2801
REMARK 3 L33: 2.0876 L12: 0.5082
REMARK 3 L13: -0.7212 L23: -0.7511
REMARK 3 S TENSOR
REMARK 3 S11: 0.0196 S12: 0.2764 S13: 0.1789
REMARK 3 S21: -0.1412 S22: 0.0832 S23: 0.1342
REMARK 3 S31: -0.0840 S32: -0.2465 S33: -0.0956
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 136:338)
REMARK 3 ORIGIN FOR THE GROUP (A): 35.0820 -20.4965 -1.3264
REMARK 3 T TENSOR
REMARK 3 T11: 0.2185 T22: 0.1488
REMARK 3 T33: 0.1714 T12: 0.0064
REMARK 3 T13: 0.0214 T23: -0.0049
REMARK 3 L TENSOR
REMARK 3 L11: 0.8167 L22: 0.8522
REMARK 3 L33: 2.2506 L12: 0.2978
REMARK 3 L13: -0.1086 L23: -0.4382
REMARK 3 S TENSOR
REMARK 3 S11: 0.0199 S12: -0.0859 S13: 0.1014
REMARK 3 S21: 0.1406 S22: 0.0175 S23: 0.0350
REMARK 3 S31: -0.1146 S32: -0.0530 S33: -0.0316
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 339:424)
REMARK 3 ORIGIN FOR THE GROUP (A): 26.3985 -24.9019 -29.9557
REMARK 3 T TENSOR
REMARK 3 T11: 0.2390 T22: 0.2317
REMARK 3 T33: 0.2151 T12: -0.0471
REMARK 3 T13: -0.0332 T23: 0.0464
REMARK 3 L TENSOR
REMARK 3 L11: 1.7635 L22: 1.7371
REMARK 3 L33: 2.7991 L12: 0.4389
REMARK 3 L13: -0.1926 L23: -0.6983
REMARK 3 S TENSOR
REMARK 3 S11: -0.0460 S12: 0.1850 S13: -0.1426
REMARK 3 S21: -0.2808 S22: 0.0895 S23: 0.0809
REMARK 3 S31: 0.3186 S32: -0.2185 S33: -0.0928
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 425:575)
REMARK 3 ORIGIN FOR THE GROUP (A): 54.4683 -41.6957 -19.6385
REMARK 3 T TENSOR
REMARK 3 T11: 0.2070 T22: 0.2241
REMARK 3 T33: 0.2102 T12: -0.0120
REMARK 3 T13: 0.0265 T23: -0.0345
REMARK 3 L TENSOR
REMARK 3 L11: 3.5176 L22: 3.8505
REMARK 3 L33: 1.9150 L12: 0.2713
REMARK 3 L13: 0.1526 L23: 1.2339
REMARK 3 S TENSOR
REMARK 3 S11: 0.0199 S12: 0.2024 S13: -0.4470
REMARK 3 S21: 0.0211 S22: 0.0028 S23: -0.1981
REMARK 3 S31: 0.0636 S32: 0.0969 S33: -0.0064
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 4EPL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAY-12.
REMARK 100 THE DEPOSITION ID IS D_1000071913.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 13-JUL-11
REMARK 200 TEMPERATURE (KELVIN) : 76
REMARK 200 PH : 7.0
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 19-ID
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.979
REMARK 200 MONOCHROMATOR : SI(111)
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000
REMARK 200 DATA SCALING SOFTWARE : HKL-3000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43730
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000
REMARK 200 RESOLUTION RANGE LOW (A) : 47.500
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 200 DATA REDUNDANCY : 7.300
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : 0.06200
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 26.2000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 7.30
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 50.77
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M TARTRATE, 0.1 M MOPSO, 5 MM ATP,
REMARK 280 5 MM MGCL2, 5MM JASMONIC ACID, 5 MM ISOLEUCINE, PH 7.0, VAPOR
REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z
REMARK 290 3555 -X,Y,-Z
REMARK 290 4555 X,-Y,-Z
REMARK 290 5555 X+1/2,Y+1/2,Z
REMARK 290 6555 -X+1/2,-Y+1/2,Z
REMARK 290 7555 -X+1/2,Y+1/2,-Z
REMARK 290 8555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 53.51950
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 79.51200
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 53.51950
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 79.51200
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 53.51950
REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 79.51200
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 53.51950
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 79.51200
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 2330 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 44790 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 53.51950
REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -79.51200
REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A 805 LIES ON A SPECIAL POSITION.
REMARK 375 HOH A 821 LIES ON A SPECIAL POSITION.
REMARK 375 HOH A 969 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A -5
REMARK 465 SER A -4
REMARK 465 HIS A -3
REMARK 465 MET A -2
REMARK 465 ALA A -1
REMARK 465 ARG A 0
REMARK 465 MET A 1
REMARK 465 LEU A 2
REMARK 465 GLU A 3
REMARK 465 LYS A 4
REMARK 465 VAL A 5
REMARK 465 GLU A 6
REMARK 465 GLY A 52
REMARK 465 ASN A 53
REMARK 465 ALA A 54
REMARK 465 THR A 55
REMARK 465 SER A 367
REMARK 465 GLU A 368
REMARK 465 THR A 369
REMARK 465 GLY A 370
REMARK 465 GLU A 371
REMARK 465 GLY A 372
REMARK 465 GLU A 373
REMARK 465 SER A 540
REMARK 465 SER A 541
REMARK 465 ALA A 542
REMARK 465 GLY A 543
REMARK 465 GLN A 544
REMARK 465 PHE A 545
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASN A 414 -130.57 50.38
REMARK 500 ASN A 432 -88.01 -124.03
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE JAI A 601
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 4EPM RELATED DB: PDB
REMARK 900 RELATED ID: 4EQL RELATED DB: PDB
REMARK 900 RELATED ID: 4EWV RELATED DB: PDB
DBREF 4EPL A 1 575 UNP Q9SKE2 JAR1_ARATH 1 575
SEQADV 4EPL GLY A -5 UNP Q9SKE2 EXPRESSION TAG
SEQADV 4EPL SER A -4 UNP Q9SKE2 EXPRESSION TAG
SEQADV 4EPL HIS A -3 UNP Q9SKE2 EXPRESSION TAG
SEQADV 4EPL MET A -2 UNP Q9SKE2 EXPRESSION TAG
SEQADV 4EPL ALA A -1 UNP Q9SKE2 EXPRESSION TAG
SEQADV 4EPL ARG A 0 UNP Q9SKE2 EXPRESSION TAG
SEQRES 1 A 581 GLY SER HIS MET ALA ARG MET LEU GLU LYS VAL GLU THR
SEQRES 2 A 581 PHE ASP MET ASN ARG VAL ILE ASP GLU PHE ASP GLU MET
SEQRES 3 A 581 THR ARG ASN ALA HIS GLN VAL GLN LYS GLN THR LEU LYS
SEQRES 4 A 581 GLU ILE LEU LEU LYS ASN GLN SER ALA ILE TYR LEU GLN
SEQRES 5 A 581 ASN CYS GLY LEU ASN GLY ASN ALA THR ASP PRO GLU GLU
SEQRES 6 A 581 ALA PHE LYS SER MET VAL PRO LEU VAL THR ASP VAL GLU
SEQRES 7 A 581 LEU GLU PRO TYR ILE LYS ARG MET VAL ASP GLY ASP THR
SEQRES 8 A 581 SER PRO ILE LEU THR GLY HIS PRO VAL PRO ALA ILE SER
SEQRES 9 A 581 LEU SER SER GLY THR SER GLN GLY ARG PRO LYS PHE ILE
SEQRES 10 A 581 PRO PHE THR ASP GLU LEU MET GLU ASN THR LEU GLN LEU
SEQRES 11 A 581 PHE ARG THR ALA PHE ALA PHE ARG ASN ARG ASP PHE PRO
SEQRES 12 A 581 ILE ASP ASP ASN GLY LYS ALA LEU GLN PHE ILE PHE SER
SEQRES 13 A 581 SER LYS GLN TYR ILE SER THR GLY GLY VAL PRO VAL GLY
SEQRES 14 A 581 THR ALA THR THR ASN VAL TYR ARG ASN PRO ASN PHE LYS
SEQRES 15 A 581 ALA GLY MET LYS SER ILE THR SER PRO SER CYS SER PRO
SEQRES 16 A 581 ASP GLU VAL ILE PHE SER PRO ASP VAL HIS GLN ALA LEU
SEQRES 17 A 581 TYR CYS HIS LEU LEU SER GLY ILE LEU PHE ARG ASP GLN
SEQRES 18 A 581 VAL GLN TYR VAL PHE ALA VAL PHE ALA HIS GLY LEU VAL
SEQRES 19 A 581 HIS ALA PHE ARG THR PHE GLU GLN VAL TRP GLU GLU ILE
SEQRES 20 A 581 VAL THR ASP ILE LYS ASP GLY VAL LEU SER ASN ARG ILE
SEQRES 21 A 581 THR VAL PRO SER VAL ARG THR ALA MET SER LYS LEU LEU
SEQRES 22 A 581 THR PRO ASN PRO GLU LEU ALA GLU THR ILE ARG THR LYS
SEQRES 23 A 581 CYS MET SER LEU SER ASN TRP TYR GLY LEU ILE PRO ALA
SEQRES 24 A 581 LEU PHE PRO ASN ALA LYS TYR VAL TYR GLY ILE MET THR
SEQRES 25 A 581 GLY SER MET GLU PRO TYR VAL PRO LYS LEU ARG HIS TYR
SEQRES 26 A 581 ALA GLY ASP LEU PRO LEU VAL SER HIS ASP TYR GLY SER
SEQRES 27 A 581 SER GLU GLY TRP ILE ALA ALA ASN VAL THR PRO ARG LEU
SEQRES 28 A 581 SER PRO GLU GLU ALA THR PHE ALA VAL ILE PRO ASN LEU
SEQRES 29 A 581 GLY TYR PHE GLU PHE LEU PRO VAL SER GLU THR GLY GLU
SEQRES 30 A 581 GLY GLU GLU LYS PRO VAL GLY LEU THR GLN VAL LYS ILE
SEQRES 31 A 581 GLY GLU GLU TYR GLU VAL VAL ILE THR ASN TYR ALA GLY
SEQRES 32 A 581 LEU TYR ARG TYR ARG LEU GLY ASP VAL VAL LYS VAL ILE
SEQRES 33 A 581 GLY PHE TYR ASN ASN THR PRO GLN LEU LYS PHE ILE CYS
SEQRES 34 A 581 ARG ARG ASN LEU ILE LEU SER ILE ASN ILE ASP LYS ASN
SEQRES 35 A 581 THR GLU ARG ASP LEU GLN LEU SER VAL GLU SER ALA ALA
SEQRES 36 A 581 LYS ARG LEU SER GLU GLU LYS ILE GLU VAL ILE ASP PHE
SEQRES 37 A 581 SER SER TYR ILE ASP VAL SER THR ASP PRO GLY HIS TYR
SEQRES 38 A 581 ALA ILE PHE TRP GLU ILE SER GLY GLU THR ASN GLU ASP
SEQRES 39 A 581 VAL LEU GLN ASP CYS CYS ASN CYS LEU ASP ARG ALA PHE
SEQRES 40 A 581 ILE ASP ALA GLY TYR VAL SER SER ARG LYS CYS LYS THR
SEQRES 41 A 581 ILE GLY ALA LEU GLU LEU ARG VAL VAL ALA LYS GLY THR
SEQRES 42 A 581 PHE ARG LYS ILE GLN GLU HIS PHE LEU GLY LEU GLY SER
SEQRES 43 A 581 SER ALA GLY GLN PHE LYS MET PRO ARG CYS VAL LYS PRO
SEQRES 44 A 581 SER ASN ALA LYS VAL LEU GLN ILE LEU CYS GLU ASN VAL
SEQRES 45 A 581 VAL SER SER TYR PHE SER THR ALA PHE
HET JAI A 601 23
HETNAM JAI N-({(1R,2R)-3-OXO-2-[(2Z)-PENT-2-EN-1-
HETNAM 2 JAI YL]CYCLOPENTYL}ACETYL)-L-ISOLEUCINE
FORMUL 2 JAI C18 H29 N O4
FORMUL 3 HOH *375(H2 O)
HELIX 1 1 ASP A 9 ASN A 23 1 15
HELIX 2 2 ASN A 23 ASN A 39 1 17
HELIX 3 3 ALA A 42 ASN A 47 1 6
HELIX 4 4 PRO A 57 VAL A 65 1 9
HELIX 5 5 THR A 69 ASP A 82 1 14
HELIX 6 6 THR A 114 PHE A 136 1 23
HELIX 7 7 THR A 164 ARG A 171 1 8
HELIX 8 8 ASN A 174 LYS A 180 1 7
HELIX 9 9 SER A 181 THR A 183 5 3
HELIX 10 10 PRO A 189 PHE A 194 1 6
HELIX 11 11 ASP A 197 PHE A 212 1 16
HELIX 12 12 ALA A 224 GLY A 248 1 25
HELIX 13 13 VAL A 256 LYS A 265 1 10
HELIX 14 14 ASN A 270 LEU A 284 1 15
HELIX 15 15 GLY A 289 PHE A 295 1 7
HELIX 16 16 THR A 306 PRO A 311 5 6
HELIX 17 17 TYR A 312 GLY A 321 1 10
HELIX 18 18 THR A 380 VAL A 382 5 3
HELIX 19 19 THR A 437 GLU A 454 1 18
HELIX 20 20 ASN A 486 PHE A 501 1 16
HELIX 21 21 ASP A 503 CYS A 512 1 10
HELIX 22 22 GLY A 526 GLY A 537 1 12
HELIX 23 23 ASN A 555 GLU A 564 1 10
SHEET 1 A 4 ARG A 107 PHE A 113 0
SHEET 2 A 4 ALA A 96 SER A 104 -1 N SER A 98 O ILE A 111
SHEET 3 A 4 PRO A 161 GLY A 163 1 O GLY A 163 N LEU A 99
SHEET 4 A 4 TYR A 154 ILE A 155 -1 N TYR A 154 O VAL A 162
SHEET 1 B 4 LYS A 143 PHE A 147 0
SHEET 2 B 4 VAL A 216 PHE A 223 1 O PHE A 220 N PHE A 147
SHEET 3 B 4 VAL A 301 ILE A 304 1 O TYR A 302 N VAL A 219
SHEET 4 B 4 LEU A 325 SER A 327 1 O VAL A 326 N VAL A 301
SHEET 1 C 8 TYR A 330 SER A 332 0
SHEET 2 C 8 GLY A 335 ALA A 339 -1 O ILE A 337 N TYR A 330
SHEET 3 C 8 PHE A 352 VAL A 354 -1 O ALA A 353 N ALA A 339
SHEET 4 C 8 THR A 416 ARG A 424 -1 O LEU A 419 N PHE A 352
SHEET 5 C 8 TYR A 401 TYR A 413 -1 N GLY A 411 O GLN A 418
SHEET 6 C 8 GLU A 387 THR A 393 -1 N ILE A 392 O TYR A 401
SHEET 7 C 8 TYR A 360 PRO A 365 -1 N GLU A 362 O VAL A 391
SHEET 8 C 8 VAL A 377 GLY A 378 -1 O VAL A 377 N PHE A 363
SHEET 1 D 4 VAL A 459 ASP A 467 0
SHEET 2 D 4 HIS A 474 ILE A 481 -1 O GLU A 480 N ILE A 460
SHEET 3 D 4 GLU A 519 VAL A 523 1 O ARG A 521 N ILE A 477
SHEET 4 D 4 VAL A 566 PHE A 571 -1 O VAL A 567 N VAL A 522
CISPEP 1 ASP A 471 PRO A 472 0 0.67
SITE 1 AC1 13 SER A 101 THR A 164 ALA A 165 THR A 166
SITE 2 AC1 13 PHE A 223 ILE A 304 GLY A 331 SER A 332
SITE 3 AC1 13 SER A 333 TRP A 336 HOH A 718 HOH A 808
SITE 4 AC1 13 HOH A1071
CRYST1 107.039 159.024 76.401 90.00 90.00 90.00 C 2 2 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009342 0.000000 0.000000 0.00000
SCALE2 0.000000 0.006288 0.000000 0.00000
SCALE3 0.000000 0.000000 0.013089 0.00000