HEADER HYDROLASE 18-APR-12 4EQI TITLE CRYSTAL STRUCTURE OF SERRATIA FONTICOLA CARBAPENEMASE SFC-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBAPENEM-HYDROLIZING BETA-LACTAMASE SFC-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 27-309; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SERRATIA FONTICOLA; SOURCE 3 ORGANISM_TAXID: 47917; SOURCE 4 STRAIN: UTAD54; SOURCE 5 GENE: BLASFC-1, SFC-1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET26-B KEYWDS BETA-LACTAMASE, CARBAPENEMASE, HYDROLASE, ANTIBIOTIC RESISTANCE EXPDTA X-RAY DIFFRACTION AUTHOR F.FONSECA,J.SPENCER REVDAT 3 13-SEP-23 4EQI 1 REMARK LINK REVDAT 2 28-AUG-13 4EQI 1 JRNL REVDAT 1 23-MAY-12 4EQI 0 JRNL AUTH F.FONSECA,E.I.CHUDYK,M.W.VAN DER KAMP,A.CORREIA, JRNL AUTH 2 A.J.MULHOLLAND,J.SPENCER JRNL TITL THE BASIS FOR CARBAPENEM HYDROLYSIS BY CLASS A JRNL TITL 2 BETA-LACTAMASES: A COMBINED INVESTIGATION USING JRNL TITL 3 CRYSTALLOGRAPHY AND SIMULATIONS. JRNL REF J.AM.CHEM.SOC. V. 134 18275 2012 JRNL REFN ISSN 0002-7863 JRNL PMID 23030300 JRNL DOI 10.1021/JA304460J REMARK 2 REMARK 2 RESOLUTION. 1.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.141 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.140 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 4966 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 99390 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.115 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.114 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.159 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 3749 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 76213 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4180 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 710 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 4913.4 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 3948.0 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 65 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 46426 REMARK 3 NUMBER OF RESTRAINTS : 58396 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 ANGLE DISTANCES (A) : 0.029 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.029 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.058 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.062 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.019 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.003 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.019 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.046 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ANISOTROPIC REFINEMENT REDUCED FREE R REMARK 3 (NO CUTOFF) BY 1.11% REMARK 4 REMARK 4 4EQI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000071946. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX10.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.117 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 99419 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.380 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2340 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.56800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.030 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2OV5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA ACETATE, PEG 3350, PH 7, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.71500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -173.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 22 REMARK 465 LEU A 295 REMARK 465 ARG A 296 REMARK 465 MET A 297 REMARK 465 ALA A 298 REMARK 465 THR A 299 REMARK 465 GLY A 300 REMARK 465 LYS A 301 REMARK 465 SER A 302 REMARK 465 ILE A 303 REMARK 465 GLY A 304 REMARK 465 PHE A 305 REMARK 465 MET B 297 REMARK 465 ALA B 298 REMARK 465 THR B 299 REMARK 465 GLY B 300 REMARK 465 LYS B 301 REMARK 465 SER B 302 REMARK 465 ILE B 303 REMARK 465 GLY B 304 REMARK 465 PHE B 305 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 209 NA NA B 405 1.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 43 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 100 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 PHE A 160 CB - CG - CD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 164 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 164 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG A 178 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 204 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 204 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP A 209 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 222 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ASP A 281 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 PHE A 290 CA - C - N ANGL. DEV. = 13.5 DEGREES REMARK 500 PHE A 290 O - C - N ANGL. DEV. = -11.4 DEGREES REMARK 500 ASP A 293 CB - CG - OD2 ANGL. DEV. = 7.7 DEGREES REMARK 500 ARG B 43 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 65 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG B 65 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG B 153 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 153 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 PHE B 160 CB - CG - CD2 ANGL. DEV. = 4.3 DEGREES REMARK 500 ASP B 163 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP B 163 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP B 177 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG B 178 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 222 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 270 CD - NE - CZ ANGL. DEV. = 18.9 DEGREES REMARK 500 ARG B 270 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG B 270 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 296 CD - NE - CZ ANGL. DEV. = 9.1 DEGREES REMARK 500 ARG B 296 CD - NE - CZ ANGL. DEV. = 9.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 69 -141.45 52.30 REMARK 500 TYR A 97 35.09 -152.21 REMARK 500 ASP A 98 -53.07 -27.06 REMARK 500 ARG A 220 -120.83 -111.51 REMARK 500 ASP A 293 -20.01 -38.36 REMARK 500 SER B 23 -85.68 -129.06 REMARK 500 CYS B 69 -140.31 50.64 REMARK 500 TYR B 97 38.91 -148.86 REMARK 500 HIS B 105 60.12 61.25 REMARK 500 ARG B 220 -125.93 -118.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 406 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 82 OG REMARK 620 2 SER A 82 O 64.9 REMARK 620 3 GLN A 86 OE1 108.8 61.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 84 OG REMARK 620 2 GLU A 203 OE2 119.3 REMARK 620 3 HOH A 761 O 113.4 89.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 409 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 266 OG REMARK 620 2 HOH A 569 O 120.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 556 O REMARK 620 2 HOH A 751 O 104.7 REMARK 620 3 HOH B 536 O 124.5 114.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 405 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 607 O REMARK 620 2 HOH A 713 O 113.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 407 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 541 O REMARK 620 2 HOH A 681 O 119.9 REMARK 620 3 HOH A 737 O 133.4 102.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 408 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 560 O REMARK 620 2 THR B 202 O 125.6 REMARK 620 3 HOH B 658 O 105.8 120.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 706 O REMARK 620 2 HOH A 805 O 63.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 407 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 41 O REMARK 620 2 HOH B 544 O 106.6 REMARK 620 3 HOH B 735 O 104.3 105.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 411 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP B 229 O REMARK 620 2 HOH B 584 O 86.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 412 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 582 O REMARK 620 2 HOH B 694 O 144.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 414 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EV4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SERRATIA FONTICOLA CARBAPENEMASE SFC-1 E166A REMARK 900 MUTANT WITH THE ACYLENZYME INTERMEDIATE OF MEROPENEM REMARK 900 RELATED ID: 4EUZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SERRATIA FONTICOLA CARBAPENEMASE SFC-1 S70A- REMARK 900 MEROPENEM COMPLEX REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE TWO SEQADV RECORDS RELATED TO RESIDUES 255 AND 270 REPRESENT REMARK 999 DISCREPANCIES BETWEEN THE PREVIOUSLY DEPOSITED SEQUENCE (UNP Q6JP75) REMARK 999 AND THE EXPRESSION CLONE, ARISING EITHER FROM PCR ERRORS OR REMARK 999 MISTAKES IN THE ORIGINAL SEQUENCE DBREF 4EQI A 22 305 UNP Q6JP75 Q6JP75_SERFO 27 309 DBREF 4EQI B 22 305 UNP Q6JP75 Q6JP75_SERFO 27 309 SEQADV 4EQI ALA A 255 UNP Q6JP75 GLY 259 SEE REMARK 999 SEQADV 4EQI ARG A 270 UNP Q6JP75 LYS 274 SEE REMARK 999 SEQADV 4EQI ALA B 255 UNP Q6JP75 GLY 259 SEE REMARK 999 SEQADV 4EQI ARG B 270 UNP Q6JP75 LYS 274 SEE REMARK 999 SEQRES 1 A 283 ALA SER GLN PRO PRO GLN VAL THR VAL ASP LYS LEU LYS SEQRES 2 A 283 ARG LEU GLU ASN ASP PHE GLY GLY ARG ILE GLY VAL TYR SEQRES 3 A 283 ALA ILE ASP THR GLY SER ASN LYS THR PHE GLY TYR ARG SEQRES 4 A 283 ALA ASN GLU ARG PHE PRO LEU CYS SER SER PHE LYS GLY SEQRES 5 A 283 PHE LEU ALA ALA ALA VAL LEU SER LYS SER GLN GLN GLN SEQRES 6 A 283 GLU GLY LEU LEU ASN GLN ARG ILE ARG TYR ASP ASN ARG SEQRES 7 A 283 VAL MET GLU PRO HIS SER PRO VAL THR GLU LYS GLN ILE SEQRES 8 A 283 THR THR GLY MET THR VAL ALA GLU LEU SER ALA ALA THR SEQRES 9 A 283 LEU GLN TYR SER ASP ASN GLY ALA ALA ASN LEU LEU LEU SEQRES 10 A 283 GLU LYS LEU ILE GLY GLY PRO GLU GLY MET THR SER PHE SEQRES 11 A 283 MET ARG SER ILE GLY ASP ASN VAL PHE ARG LEU ASP ARG SEQRES 12 A 283 TRP GLU LEU GLU LEU ASN SER ALA ILE PRO GLY ASP ASP SEQRES 13 A 283 ARG ASP THR SER THR PRO LYS ALA VAL ALA GLU SER MET SEQRES 14 A 283 GLN LYS LEU ALA PHE GLY ASN VAL LEU GLY LEU THR GLU SEQRES 15 A 283 ARG HIS GLN LEU MET ASP TRP PHE LYS GLY ASN THR THR SEQRES 16 A 283 GLY GLY ALA ARG ILE ARG ALA SER VAL PRO ALA ASN TRP SEQRES 17 A 283 VAL VAL GLY ASP LYS THR GLY THR CYS GLY VAL TYR GLY SEQRES 18 A 283 THR ALA ASN ASP TYR ALA VAL ILE TRP PRO VAL ALA HIS SEQRES 19 A 283 ALA PRO ILE VAL LEU ALA VAL TYR THR SER LYS PRO ASP SEQRES 20 A 283 ARG ASN SER LYS HIS SER ASP ALA VAL ILE ALA ASP ALA SEQRES 21 A 283 SER ARG ILE VAL LEU GLU SER PHE ASN ILE ASP ALA LEU SEQRES 22 A 283 ARG MET ALA THR GLY LYS SER ILE GLY PHE SEQRES 1 B 283 ALA SER GLN PRO PRO GLN VAL THR VAL ASP LYS LEU LYS SEQRES 2 B 283 ARG LEU GLU ASN ASP PHE GLY GLY ARG ILE GLY VAL TYR SEQRES 3 B 283 ALA ILE ASP THR GLY SER ASN LYS THR PHE GLY TYR ARG SEQRES 4 B 283 ALA ASN GLU ARG PHE PRO LEU CYS SER SER PHE LYS GLY SEQRES 5 B 283 PHE LEU ALA ALA ALA VAL LEU SER LYS SER GLN GLN GLN SEQRES 6 B 283 GLU GLY LEU LEU ASN GLN ARG ILE ARG TYR ASP ASN ARG SEQRES 7 B 283 VAL MET GLU PRO HIS SER PRO VAL THR GLU LYS GLN ILE SEQRES 8 B 283 THR THR GLY MET THR VAL ALA GLU LEU SER ALA ALA THR SEQRES 9 B 283 LEU GLN TYR SER ASP ASN GLY ALA ALA ASN LEU LEU LEU SEQRES 10 B 283 GLU LYS LEU ILE GLY GLY PRO GLU GLY MET THR SER PHE SEQRES 11 B 283 MET ARG SER ILE GLY ASP ASN VAL PHE ARG LEU ASP ARG SEQRES 12 B 283 TRP GLU LEU GLU LEU ASN SER ALA ILE PRO GLY ASP ASP SEQRES 13 B 283 ARG ASP THR SER THR PRO LYS ALA VAL ALA GLU SER MET SEQRES 14 B 283 GLN LYS LEU ALA PHE GLY ASN VAL LEU GLY LEU THR GLU SEQRES 15 B 283 ARG HIS GLN LEU MET ASP TRP PHE LYS GLY ASN THR THR SEQRES 16 B 283 GLY GLY ALA ARG ILE ARG ALA SER VAL PRO ALA ASN TRP SEQRES 17 B 283 VAL VAL GLY ASP LYS THR GLY THR CYS GLY VAL TYR GLY SEQRES 18 B 283 THR ALA ASN ASP TYR ALA VAL ILE TRP PRO VAL ALA HIS SEQRES 19 B 283 ALA PRO ILE VAL LEU ALA VAL TYR THR SER LYS PRO ASP SEQRES 20 B 283 ARG ASN SER LYS HIS SER ASP ALA VAL ILE ALA ASP ALA SEQRES 21 B 283 SER ARG ILE VAL LEU GLU SER PHE ASN ILE ASP ALA LEU SEQRES 22 B 283 ARG MET ALA THR GLY LYS SER ILE GLY PHE HET EDO A 401 4 HET NA A 402 1 HET NA A 403 1 HET NA A 404 1 HET NA A 405 1 HET NA A 406 1 HET NA A 407 1 HET NA A 408 1 HET NA A 409 1 HET NA A 410 1 HET NA A 411 1 HET NA A 412 1 HET EDO B 401 4 HET EDO B 402 4 HET EDO B 403 4 HET NA B 404 1 HET NA B 405 1 HET NA B 406 1 HET NA B 407 1 HET NA B 408 1 HET NA B 409 1 HET NA B 410 1 HET NA B 411 1 HET NA B 412 1 HET NA B 413 1 HET NA B 414 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 4(C2 H6 O2) FORMUL 4 NA 22(NA 1+) FORMUL 29 HOH *710(H2 O) HELIX 1 1 PRO A 25 GLY A 41 1 17 HELIX 2 2 SER A 71 GLN A 85 1 15 HELIX 3 3 GLY A 89 ASN A 92 5 4 HELIX 4 4 SER A 106 GLN A 112 1 7 HELIX 5 5 VAL A 119 TYR A 129 1 11 HELIX 6 6 ASP A 131 LEU A 141 1 12 HELIX 7 7 GLY A 143 ILE A 155 1 13 HELIX 8 8 LEU A 167 ALA A 172 5 6 HELIX 9 9 THR A 182 GLY A 196 1 15 HELIX 10 10 GLY A 200 GLY A 213 1 14 HELIX 11 11 ARG A 220 VAL A 225 5 6 HELIX 12 12 SER A 275 SER A 289 1 15 HELIX 13 13 PRO B 25 GLY B 41 1 17 HELIX 14 14 SER B 71 GLN B 85 1 15 HELIX 15 15 GLY B 89 ASN B 92 5 4 HELIX 16 16 SER B 106 GLN B 112 1 7 HELIX 17 17 VAL B 119 TYR B 129 1 11 HELIX 18 18 ASP B 131 LEU B 141 1 12 HELIX 19 19 GLY B 143 ILE B 155 1 13 HELIX 20 20 LEU B 167 SER B 171 5 5 HELIX 21 21 THR B 182 GLY B 196 1 15 HELIX 22 22 GLY B 200 GLY B 213 1 14 HELIX 23 23 ARG B 220 VAL B 225 5 6 HELIX 24 24 SER B 275 GLU B 288 1 14 HELIX 25 25 SER B 289 ASN B 291 5 3 SHEET 1 A 5 THR A 56 TYR A 60 0 SHEET 2 A 5 ARG A 43 ASP A 50 -1 N VAL A 46 O TYR A 60 SHEET 3 A 5 ILE A 259 SER A 266 -1 O TYR A 264 N GLY A 45 SHEET 4 A 5 ALA A 244 TRP A 251 -1 N ASP A 246 O VAL A 263 SHEET 5 A 5 VAL A 230 THR A 237 -1 N VAL A 230 O TRP A 251 SHEET 1 B 2 PHE A 66 PRO A 67 0 SHEET 2 B 2 THR A 180 SER A 181 -1 O SER A 181 N PHE A 66 SHEET 1 C 2 ARG A 94 ILE A 95 0 SHEET 2 C 2 MET A 117 THR A 118 -1 O MET A 117 N ILE A 95 SHEET 1 D 5 THR B 56 TYR B 60 0 SHEET 2 D 5 ARG B 43 ASP B 50 -1 N VAL B 46 O TYR B 60 SHEET 3 D 5 ILE B 259 SER B 266 -1 O TYR B 264 N GLY B 45 SHEET 4 D 5 ALA B 244 TRP B 251 -1 N ILE B 250 O ILE B 259 SHEET 5 D 5 VAL B 230 THR B 237 -1 N VAL B 230 O TRP B 251 SHEET 1 E 2 PHE B 66 PRO B 67 0 SHEET 2 E 2 THR B 180 SER B 181 -1 O SER B 181 N PHE B 66 SHEET 1 F 2 ARG B 94 ILE B 95 0 SHEET 2 F 2 MET B 117 THR B 118 -1 O MET B 117 N ILE B 95 SSBOND 1 CYS A 69 CYS A 238 1555 1555 2.05 SSBOND 2 CYS B 69 CYS B 238 1555 1555 2.06 LINK OD1 ASP A 31 NA NA A 408 1555 1555 2.53 LINK OG SER A 82 NA NA A 406 1555 1555 3.01 LINK O SER A 82 NA NA A 406 1555 1555 3.16 LINK OG SER A 84 NA NA A 404 1555 1555 2.77 LINK OE1AGLN A 86 NA NA A 406 1555 1555 2.63 LINK OE2 GLU A 203 NA NA A 404 1555 1555 2.63 LINK O ALA A 255 NA NA A 410 1555 1555 2.91 LINK OG SER A 266 NA A NA A 409 1555 1555 2.28 LINK NA NA A 402 O HOH A 556 1555 1555 2.78 LINK NA NA A 402 O HOH A 751 1555 1555 2.48 LINK NA NA A 402 O HOH B 536 1555 1555 3.07 LINK NA NA A 403 O HOH B 612 1555 1555 2.63 LINK NA NA A 404 O HOH A 761 1555 1555 3.18 LINK NA NA A 405 O HOH A 607 1555 1555 2.41 LINK NA NA A 405 O HOH A 713 1555 1555 2.41 LINK NA NA A 407 O HOH A 541 1555 1555 3.05 LINK NA NA A 407 O HOH A 681 1555 1555 2.42 LINK NA NA A 407 O HOH A 737 1555 1555 2.38 LINK NA A NA A 409 O HOH A 569 1555 1555 2.60 LINK NA NA A 411 O HOH A 630 1555 1555 3.17 LINK NA NA A 412 O HOH A 720 1555 1555 2.61 LINK O HOH A 560 NA NA B 408 1555 1555 2.84 LINK O HOH A 706 NA NA B 404 1555 1555 2.41 LINK O HOH A 805 NA NA B 404 1555 1555 2.24 LINK O GLY B 41 NA NA B 407 1555 1555 2.74 LINK O THR B 115 NA NA B 406 1555 1555 3.04 LINK O THR B 202 NA NA B 408 1555 1555 2.86 LINK O TRP B 229 NA NA B 411 1555 1555 3.12 LINK NA NA B 405 O HOH B 610 1555 1555 2.98 LINK NA NA B 407 O HOH B 544 1555 1555 2.80 LINK NA NA B 407 O HOH B 735 1555 1555 2.82 LINK NA NA B 408 O HOH B 658 1555 1555 2.57 LINK NA NA B 409 O HOH B 782 1555 1555 2.37 LINK NA NA B 410 O HOH B 540 1555 1555 2.72 LINK NA NA B 411 O AHOH B 584 1555 1555 2.60 LINK NA NA B 412 O HOH B 582 1555 1555 2.68 LINK NA NA B 412 O HOH B 694 1555 1555 2.81 LINK NA B NA B 413 O HOH B 518 1555 1555 2.32 LINK NA NA B 414 O HOH B 566 1555 1555 2.86 CISPEP 1 GLU A 166 LEU A 167 0 7.09 CISPEP 2 GLU B 166 LEU B 167 0 2.74 SITE 1 AC1 6 SER A 70 LYS A 73 SER A 130 HOH A 519 SITE 2 AC1 6 HOH A 521 HOH A 857 SITE 1 AC2 3 HOH A 556 HOH A 751 HOH B 536 SITE 1 AC3 4 TRP A 251 PRO A 258 HIS B 205 HOH B 612 SITE 1 AC4 2 SER A 84 GLU A 203 SITE 1 AC5 3 PRO A 268 HOH A 607 HOH A 713 SITE 1 AC6 3 SER A 82 GLN A 85 GLN A 86 SITE 1 AC7 5 GLN A 191 LYS A 192 HOH A 541 HOH A 681 SITE 2 AC7 5 HOH A 737 SITE 1 AC8 3 GLN A 27 ASP A 31 LYS A 34 SITE 1 AC9 4 ARG A 43 SER A 266 HOH A 569 HOH A 815 SITE 1 BC1 1 ALA A 255 SITE 1 BC2 1 ASP A 163 SITE 1 BC3 1 HOH A 720 SITE 1 BC4 6 GLY B 156 ASN B 158 ALA B 185 GLU B 188 SITE 2 BC4 6 HOH B 512 HOH B 741 SITE 1 BC5 7 GLY B 239 VAL B 240 ARG B 270 ASN B 271 SITE 2 BC5 7 LYS B 273 HOH B 516 HOH B 591 SITE 1 BC6 6 SER B 70 LYS B 73 SER B 130 HOH B 511 SITE 2 BC6 6 HOH B 527 HOH B 830 SITE 1 BC7 4 HIS A 205 HOH A 706 HOH A 805 HIS B 205 SITE 1 BC8 4 LYS A 212 ASP B 209 LYS B 212 HOH B 610 SITE 1 BC9 2 ARG B 96 THR B 115 SITE 1 CC1 4 GLY B 41 LYS B 267 HOH B 544 HOH B 735 SITE 1 CC2 4 HOH A 560 THR B 202 GLN B 206 HOH B 658 SITE 1 CC3 3 ASN B 63 LYS B 184 HOH B 782 SITE 1 CC4 1 HOH B 540 SITE 1 CC5 3 ALA B 227 TRP B 229 HOH B 584 SITE 1 CC6 4 PRO B 107 NA B 414 HOH B 582 HOH B 694 SITE 1 CC7 3 ASP B 293 HOH B 518 HOH B 712 SITE 1 CC8 3 GLU B 110 NA B 412 HOH B 566 CRYST1 42.330 85.430 70.280 90.00 103.27 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023624 0.000000 0.005571 0.00000 SCALE2 0.000000 0.011705 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014619 0.00000