data_4ERD # _entry.id 4ERD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4ERD NDB NA1755 RCSB RCSB071974 WWPDB D_1000071974 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4EYT _pdbx_database_related.details 'Crystal structure of the C-terminal domain of Tetrahymena telomerase protein p65' _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 4ERD _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-04-19 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Singh, M.' 1 'Wang, Z.' 2 'Koo, B.-K.' 3 'Patel, A.' 4 'Cascio, D.' 5 'Collins, K.' 6 'Feigon, J.' 7 # _citation.id primary _citation.title 'Structural Basis for Telomerase RNA Recognition and RNP Assembly by the Holoenzyme La Family Protein p65.' _citation.journal_abbrev Mol.Cell _citation.journal_volume 47 _citation.page_first 16 _citation.page_last 26 _citation.year 2012 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22705372 _citation.pdbx_database_id_DOI 10.1016/j.molcel.2012.05.018 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Singh, M.' 1 primary 'Wang, Z.' 2 primary 'Koo, B.K.' 3 primary 'Patel, A.' 4 primary 'Cascio, D.' 5 primary 'Collins, K.' 6 primary 'Feigon, J.' 7 # _cell.entry_id 4ERD _cell.length_a 88.830 _cell.length_b 88.830 _cell.length_c 119.210 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4ERD _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Telomerase associated protein p65' 15785.705 2 ? ? 'SEE REMARK 999' ? 2 polymer syn "5'-R(P*GP*GP*UP*CP*GP*AP*CP*AP*UP*CP*UP*UP*CP*GP*GP*AP*UP*GP*GP*AP*CP*C)-3'" 7050.227 2 ? ? ? 'stem IV of telomerase RNA' 3 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 4 water nat water 18.015 22 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes ;(MSE)HHHHHHSIKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDGQA(MSE)IRFQNSDEQRLAIQKLLNHNNN KLQIEIRGQICDVISTIPEDEEKNYWNYIKFKKNEFRKFFF(MSE)KKQQKKQNITQNYNK ; ;MHHHHHHSIKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRG QICDVISTIPEDEEKNYWNYIKFKKNEFRKFFFMKKQQKKQNITQNYNK ; A,B ? 2 polyribonucleotide no no GGUCGACAUCUUCGGAUGGACC GGUCGACAUCUUCGGAUGGACC C,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 SER n 1 9 ILE n 1 10 LYS n 1 11 GLN n 1 12 ASN n 1 13 CYS n 1 14 LEU n 1 15 ILE n 1 16 LYS n 1 17 ILE n 1 18 ILE n 1 19 ASN n 1 20 ILE n 1 21 PRO n 1 22 GLN n 1 23 GLY n 1 24 THR n 1 25 LEU n 1 26 LYS n 1 27 ALA n 1 28 GLU n 1 29 VAL n 1 30 VAL n 1 31 LEU n 1 32 ALA n 1 33 VAL n 1 34 ARG n 1 35 HIS n 1 36 LEU n 1 37 GLY n 1 38 TYR n 1 39 GLU n 1 40 PHE n 1 41 TYR n 1 42 CYS n 1 43 ASP n 1 44 TYR n 1 45 ILE n 1 46 ASP n 1 47 GLY n 1 48 GLN n 1 49 ALA n 1 50 MSE n 1 51 ILE n 1 52 ARG n 1 53 PHE n 1 54 GLN n 1 55 ASN n 1 56 SER n 1 57 ASP n 1 58 GLU n 1 59 GLN n 1 60 ARG n 1 61 LEU n 1 62 ALA n 1 63 ILE n 1 64 GLN n 1 65 LYS n 1 66 LEU n 1 67 LEU n 1 68 ASN n 1 69 HIS n 1 70 ASN n 1 71 ASN n 1 72 ASN n 1 73 LYS n 1 74 LEU n 1 75 GLN n 1 76 ILE n 1 77 GLU n 1 78 ILE n 1 79 ARG n 1 80 GLY n 1 81 GLN n 1 82 ILE n 1 83 CYS n 1 84 ASP n 1 85 VAL n 1 86 ILE n 1 87 SER n 1 88 THR n 1 89 ILE n 1 90 PRO n 1 91 GLU n 1 92 ASP n 1 93 GLU n 1 94 GLU n 1 95 LYS n 1 96 ASN n 1 97 TYR n 1 98 TRP n 1 99 ASN n 1 100 TYR n 1 101 ILE n 1 102 LYS n 1 103 PHE n 1 104 LYS n 1 105 LYS n 1 106 ASN n 1 107 GLU n 1 108 PHE n 1 109 ARG n 1 110 LYS n 1 111 PHE n 1 112 PHE n 1 113 PHE n 1 114 MSE n 1 115 LYS n 1 116 LYS n 1 117 GLN n 1 118 GLN n 1 119 LYS n 1 120 LYS n 1 121 GLN n 1 122 ASN n 1 123 ILE n 1 124 THR n 1 125 GLN n 1 126 ASN n 1 127 TYR n 1 128 ASN n 1 129 LYS n 2 1 G n 2 2 G n 2 3 U n 2 4 C n 2 5 G n 2 6 A n 2 7 C n 2 8 A n 2 9 U n 2 10 C n 2 11 U n 2 12 U n 2 13 C n 2 14 G n 2 15 G n 2 16 A n 2 17 U n 2 18 G n 2 19 G n 2 20 A n 2 21 C n 2 22 C n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? 9 46 ? ? TAP65 ? ? ? ? ? ? 'Tetrahymena thermophila' 5911 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? 'pET30 LIC' ? ? 1 2 sample ? 47 129 ? ? TAP65 ? ? ? ? ? ? 'Tetrahymena thermophila' 5911 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? 'pET30 LIC' ? ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Tetrahymena thermophila' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 5911 _pdbx_entity_src_syn.details 'RNA was prepared by in vitro transcription with T7 RNA polymerase' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP Q6JXI6_TETTH Q6JXI6 1 IKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID 375 ? 2 UNP Q6JXI6_TETTH Q6JXI6 1 ;GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQICDVISTIPEDEEKNYWNYIKFKKNEFRKFFFMKKQQKKQNITQN YNK ; 460 ? 3 PDB 4ERD 4ERD 2 GGUCGACAUCUUCGGAUGGACC 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4ERD A 9 ? 46 ? Q6JXI6 375 ? 412 ? 375 412 2 2 4ERD A 47 ? 129 ? Q6JXI6 460 ? 542 ? 460 542 3 1 4ERD B 9 ? 46 ? Q6JXI6 375 ? 412 ? 375 412 4 2 4ERD B 47 ? 129 ? Q6JXI6 460 ? 542 ? 460 542 5 3 4ERD C 1 ? 22 ? 4ERD 117 ? 150 ? 117 150 6 3 4ERD D 1 ? 22 ? 4ERD 117 ? 150 ? 117 150 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4ERD MSE A 1 ? UNP Q6JXI6 ? ? 'EXPRESSION TAG' 367 1 1 4ERD HIS A 2 ? UNP Q6JXI6 ? ? 'EXPRESSION TAG' 368 2 1 4ERD HIS A 3 ? UNP Q6JXI6 ? ? 'EXPRESSION TAG' 369 3 1 4ERD HIS A 4 ? UNP Q6JXI6 ? ? 'EXPRESSION TAG' 370 4 1 4ERD HIS A 5 ? UNP Q6JXI6 ? ? 'EXPRESSION TAG' 371 5 1 4ERD HIS A 6 ? UNP Q6JXI6 ? ? 'EXPRESSION TAG' 372 6 1 4ERD HIS A 7 ? UNP Q6JXI6 ? ? 'EXPRESSION TAG' 373 7 1 4ERD SER A 8 ? UNP Q6JXI6 ? ? 'EXPRESSION TAG' 374 8 3 4ERD MSE B 1 ? UNP Q6JXI6 ? ? 'EXPRESSION TAG' 367 9 3 4ERD HIS B 2 ? UNP Q6JXI6 ? ? 'EXPRESSION TAG' 368 10 3 4ERD HIS B 3 ? UNP Q6JXI6 ? ? 'EXPRESSION TAG' 369 11 3 4ERD HIS B 4 ? UNP Q6JXI6 ? ? 'EXPRESSION TAG' 370 12 3 4ERD HIS B 5 ? UNP Q6JXI6 ? ? 'EXPRESSION TAG' 371 13 3 4ERD HIS B 6 ? UNP Q6JXI6 ? ? 'EXPRESSION TAG' 372 14 3 4ERD HIS B 7 ? UNP Q6JXI6 ? ? 'EXPRESSION TAG' 373 15 3 4ERD SER B 8 ? UNP Q6JXI6 ? ? 'EXPRESSION TAG' 374 16 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4ERD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.97 _exptl_crystal.density_percent_sol 58.62 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.05 M sodium cacodylate, 0.04 M magnesium chloride, 5% v/v MPD, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2011-04-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9792 1.0 2 0.9794 1.0 3 0.9718 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9792,0.9794,0.9718 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4ERD _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 76.929 _reflns.d_resolution_high 2.588 _reflns.number_obs 16940 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.078 _reflns.pdbx_netI_over_sigmaI 16.18 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.48 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.588 _reflns_shell.d_res_low 2.67 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.844 _reflns_shell.meanI_over_sigI_obs 2.57 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4ERD _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 16940 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 64.638 _refine.ls_d_res_high 2.589 _refine.ls_percent_reflns_obs 97.02 _refine.ls_R_factor_obs 0.2221 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2197 _refine.ls_R_factor_R_free 0.2717 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.98 _refine.ls_number_reflns_R_free 844 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 1.000 _refine.occupancy_max 1.000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 7.0550 _refine.aniso_B[2][2] 7.0550 _refine.aniso_B[3][3] -14.1101 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.340 _refine.solvent_model_param_bsol 49.561 _refine.pdbx_solvent_vdw_probe_radii 1.00 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.73 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.46 _refine.pdbx_overall_phase_error 28.27 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1826 _refine_hist.pdbx_number_atoms_nucleic_acid 938 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 22 _refine_hist.number_atoms_total 2787 _refine_hist.d_res_high 2.589 _refine_hist.d_res_low 64.638 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.002 ? ? 2906 'X-RAY DIFFRACTION' ? f_angle_d 0.496 ? ? 4118 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 13.250 ? ? 1244 'X-RAY DIFFRACTION' ? f_chiral_restr 0.045 ? ? 482 'X-RAY DIFFRACTION' ? f_plane_restr 0.002 ? ? 366 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.589 2.7515 2414 0.3655 89.00 0.4384 . . 134 . . . . 'X-RAY DIFFRACTION' . 2.7515 2.9639 2633 0.3013 97.00 0.3423 . . 127 . . . . 'X-RAY DIFFRACTION' . 2.9639 3.2622 2666 0.2416 99.00 0.2817 . . 167 . . . . 'X-RAY DIFFRACTION' . 3.2622 3.7342 2707 0.2034 98.00 0.2471 . . 141 . . . . 'X-RAY DIFFRACTION' . 3.7342 4.7045 2776 0.1836 100.00 0.2337 . . 135 . . . . 'X-RAY DIFFRACTION' . 4.7045 64.6585 2900 0.2095 100.00 0.2661 . . 140 . . . . # _struct.entry_id 4ERD _struct.title 'Crystal structure of the C-terminal domain of Tetrahymena telomerase protein p65 in complex with stem IV of telomerase RNA' _struct.pdbx_descriptor 'Telomerase associated protein p65/RNA complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4ERD _struct_keywords.text 'La protein, LARP7, RRM, xRRM, TER, RNA BINDING PROTEIN-RNA complex' _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN/RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 25 ? HIS A 35 ? LEU A 391 HIS A 401 1 ? 11 HELX_P HELX_P2 2 ASN A 55 ? LEU A 66 ? ASN A 468 LEU A 479 1 ? 12 HELX_P HELX_P3 3 PRO A 90 ? GLN A 118 ? PRO A 503 GLN A 531 1 ? 29 HELX_P HELX_P4 4 LEU B 25 ? HIS B 35 ? LEU B 391 HIS B 401 1 ? 11 HELX_P HELX_P5 5 ASN B 55 ? LEU B 66 ? ASN B 468 LEU B 479 1 ? 12 HELX_P HELX_P6 6 PRO B 90 ? GLN B 117 ? PRO B 503 GLN B 530 1 ? 28 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ALA 49 C ? ? ? 1_555 A MSE 50 N ? ? A ALA 462 A MSE 463 1_555 ? ? ? ? ? ? ? 1.328 ? covale2 covale ? ? A MSE 50 C ? ? ? 1_555 A ILE 51 N ? ? A MSE 463 A ILE 464 1_555 ? ? ? ? ? ? ? 1.329 ? covale3 covale ? ? A PHE 113 C ? ? ? 1_555 A MSE 114 N ? ? A PHE 526 A MSE 527 1_555 ? ? ? ? ? ? ? 1.330 ? covale4 covale ? ? A MSE 114 C ? ? ? 1_555 A LYS 115 N ? ? A MSE 527 A LYS 528 1_555 ? ? ? ? ? ? ? 1.330 ? covale5 covale ? ? B ALA 49 C ? ? ? 1_555 B MSE 50 N ? ? B ALA 462 B MSE 463 1_555 ? ? ? ? ? ? ? 1.329 ? covale6 covale ? ? B MSE 50 C ? ? ? 1_555 B ILE 51 N ? ? B MSE 463 B ILE 464 1_555 ? ? ? ? ? ? ? 1.329 ? covale7 covale ? ? B PHE 113 C ? ? ? 1_555 B MSE 114 N ? ? B PHE 526 B MSE 527 1_555 ? ? ? ? ? ? ? 1.329 ? covale8 covale ? ? B MSE 114 C ? ? ? 1_555 B LYS 115 N ? ? B MSE 527 B LYS 528 1_555 ? ? ? ? ? ? ? 1.328 ? hydrog1 hydrog ? ? C G 1 N1 ? ? ? 1_555 D C 22 N3 ? ? C G 117 D C 150 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? C G 1 N2 ? ? ? 1_555 D C 22 O2 ? ? C G 117 D C 150 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? C G 1 O6 ? ? ? 1_555 D C 22 N4 ? ? C G 117 D C 150 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? C G 2 N1 ? ? ? 1_555 D C 21 N3 ? ? C G 118 D C 149 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? C G 2 N2 ? ? ? 1_555 D C 21 O2 ? ? C G 118 D C 149 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? C G 2 O6 ? ? ? 1_555 D C 21 N4 ? ? C G 118 D C 149 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? C U 3 N3 ? ? ? 1_555 D A 20 N1 ? ? C U 119 D A 148 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? C U 3 O4 ? ? ? 1_555 D A 20 N6 ? ? C U 119 D A 148 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? C C 4 N3 ? ? ? 1_555 D G 19 N1 ? ? C C 120 D G 147 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? C C 4 N4 ? ? ? 1_555 D G 19 O6 ? ? C C 120 D G 147 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? C C 4 O2 ? ? ? 1_555 D G 19 N2 ? ? C C 120 D G 147 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? C C 7 N3 ? ? ? 1_555 D G 18 N1 ? ? C C 123 D G 146 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? C C 7 N4 ? ? ? 1_555 D G 18 O6 ? ? C C 123 D G 146 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? C C 7 O2 ? ? ? 1_555 D G 18 N2 ? ? C C 123 D G 146 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? C A 8 N1 ? ? ? 1_555 D U 17 N3 ? ? C A 124 D U 145 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? C A 8 N6 ? ? ? 1_555 D U 17 O4 ? ? C A 124 D U 145 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? C U 9 N3 ? ? ? 1_555 D A 16 N1 ? ? C U 125 D A 144 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? C U 9 O4 ? ? ? 1_555 D A 16 N6 ? ? C U 125 D A 144 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? C C 10 N3 ? ? ? 1_555 D G 15 N1 ? ? C C 126 D G 143 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? C C 10 N4 ? ? ? 1_555 D G 15 O6 ? ? C C 126 D G 143 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? C C 10 O2 ? ? ? 1_555 D G 15 N2 ? ? C C 126 D G 143 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? C U 11 N3 ? ? ? 1_555 D G 14 O6 ? ? C U 127 D G 142 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog23 hydrog ? ? C U 11 O2 ? ? ? 1_555 D G 14 N1 ? ? C U 127 D G 142 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog24 hydrog ? ? C U 12 O4 ? ? ? 1_555 D C 13 N4 ? ? C U 128 D C 141 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? hydrog25 hydrog ? ? C C 13 N4 ? ? ? 1_555 D U 12 O4 ? ? C C 141 D U 128 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? hydrog26 hydrog ? ? C G 14 N1 ? ? ? 1_555 D U 11 O2 ? ? C G 142 D U 127 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog27 hydrog ? ? C G 14 O6 ? ? ? 1_555 D U 11 N3 ? ? C G 142 D U 127 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog28 hydrog ? ? C G 15 N1 ? ? ? 1_555 D C 10 N3 ? ? C G 143 D C 126 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? C G 15 N2 ? ? ? 1_555 D C 10 O2 ? ? C G 143 D C 126 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? C G 15 O6 ? ? ? 1_555 D C 10 N4 ? ? C G 143 D C 126 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? C A 16 N1 ? ? ? 1_555 D U 9 N3 ? ? C A 144 D U 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? C A 16 N6 ? ? ? 1_555 D U 9 O4 ? ? C A 144 D U 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? C U 17 N3 ? ? ? 1_555 D A 8 N1 ? ? C U 145 D A 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? C U 17 O4 ? ? ? 1_555 D A 8 N6 ? ? C U 145 D A 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? C G 18 N1 ? ? ? 1_555 D C 7 N3 ? ? C G 146 D C 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog36 hydrog ? ? C G 18 N2 ? ? ? 1_555 D C 7 O2 ? ? C G 146 D C 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog37 hydrog ? ? C G 18 O6 ? ? ? 1_555 D C 7 N4 ? ? C G 146 D C 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog38 hydrog ? ? C G 19 O6 ? ? ? 1_555 D C 4 N4 ? ? C G 147 D C 120 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? hydrog39 hydrog ? ? C A 20 N1 ? ? ? 1_555 D U 3 N3 ? ? C A 148 D U 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog40 hydrog ? ? C A 20 N6 ? ? ? 1_555 D U 3 O4 ? ? C A 148 D U 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog41 hydrog ? ? C C 21 N3 ? ? ? 1_555 D G 2 N1 ? ? C C 149 D G 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog42 hydrog ? ? C C 21 N4 ? ? ? 1_555 D G 2 O6 ? ? C C 149 D G 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog43 hydrog ? ? C C 21 O2 ? ? ? 1_555 D G 2 N2 ? ? C C 149 D G 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog44 hydrog ? ? C C 22 N3 ? ? ? 1_555 D G 1 N1 ? ? C C 150 D G 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog45 hydrog ? ? C C 22 N4 ? ? ? 1_555 D G 1 O6 ? ? C C 150 D G 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog46 hydrog ? ? C C 22 O2 ? ? ? 1_555 D G 1 N2 ? ? C C 150 D G 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 40 ? ILE A 45 ? PHE A 406 ILE A 411 A 2 GLN A 48 ? PHE A 53 ? GLN A 461 PHE A 466 A 3 LEU A 14 ? ILE A 17 ? LEU A 380 ILE A 383 A 4 GLN A 81 ? ILE A 86 ? GLN A 494 ILE A 499 A 5 LYS A 73 ? ILE A 78 ? LYS A 486 ILE A 491 A 6 LEU A 67 ? ASN A 68 ? LEU A 480 ASN A 481 B 1 PHE B 40 ? TYR B 44 ? PHE B 406 TYR B 410 B 2 ALA B 49 ? PHE B 53 ? ALA B 462 PHE B 466 B 3 LEU B 14 ? ILE B 17 ? LEU B 380 ILE B 383 B 4 GLN B 81 ? ILE B 86 ? GLN B 494 ILE B 499 B 5 GLN B 75 ? ILE B 78 ? GLN B 488 ILE B 491 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASP A 43 ? N ASP A 409 O MSE A 50 ? O MSE A 463 A 2 3 O ALA A 49 ? O ALA A 462 N ILE A 17 ? N ILE A 383 A 3 4 N LYS A 16 ? N LYS A 382 O ILE A 86 ? O ILE A 499 A 4 5 O GLN A 81 ? O GLN A 494 N ILE A 78 ? N ILE A 491 A 5 6 O LYS A 73 ? O LYS A 486 N ASN A 68 ? N ASN A 481 B 1 2 N ASP B 43 ? N ASP B 409 O MSE B 50 ? O MSE B 463 B 2 3 O ILE B 51 ? O ILE B 464 N ILE B 15 ? N ILE B 381 B 3 4 N LYS B 16 ? N LYS B 382 O ILE B 86 ? O ILE B 499 B 4 5 O CYS B 83 ? O CYS B 496 N ILE B 76 ? N ILE B 489 # _atom_sites.entry_id 4ERD _atom_sites.fract_transf_matrix[1][1] 0.011257 _atom_sites.fract_transf_matrix[1][2] 0.006499 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012999 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008389 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 367 ? ? ? A . n A 1 2 HIS 2 368 ? ? ? A . n A 1 3 HIS 3 369 ? ? ? A . n A 1 4 HIS 4 370 ? ? ? A . n A 1 5 HIS 5 371 ? ? ? A . n A 1 6 HIS 6 372 ? ? ? A . n A 1 7 HIS 7 373 ? ? ? A . n A 1 8 SER 8 374 ? ? ? A . n A 1 9 ILE 9 375 ? ? ? A . n A 1 10 LYS 10 376 ? ? ? A . n A 1 11 GLN 11 377 ? ? ? A . n A 1 12 ASN 12 378 378 ASN ASN A . n A 1 13 CYS 13 379 379 CYS CYS A . n A 1 14 LEU 14 380 380 LEU LEU A . n A 1 15 ILE 15 381 381 ILE ILE A . n A 1 16 LYS 16 382 382 LYS LYS A . n A 1 17 ILE 17 383 383 ILE ILE A . n A 1 18 ILE 18 384 384 ILE ILE A . n A 1 19 ASN 19 385 385 ASN ASN A . n A 1 20 ILE 20 386 386 ILE ILE A . n A 1 21 PRO 21 387 387 PRO PRO A . n A 1 22 GLN 22 388 388 GLN GLN A . n A 1 23 GLY 23 389 389 GLY GLY A . n A 1 24 THR 24 390 390 THR THR A . n A 1 25 LEU 25 391 391 LEU LEU A . n A 1 26 LYS 26 392 392 LYS LYS A . n A 1 27 ALA 27 393 393 ALA ALA A . n A 1 28 GLU 28 394 394 GLU GLU A . n A 1 29 VAL 29 395 395 VAL VAL A . n A 1 30 VAL 30 396 396 VAL VAL A . n A 1 31 LEU 31 397 397 LEU LEU A . n A 1 32 ALA 32 398 398 ALA ALA A . n A 1 33 VAL 33 399 399 VAL VAL A . n A 1 34 ARG 34 400 400 ARG ARG A . n A 1 35 HIS 35 401 401 HIS HIS A . n A 1 36 LEU 36 402 402 LEU LEU A . n A 1 37 GLY 37 403 403 GLY GLY A . n A 1 38 TYR 38 404 404 TYR TYR A . n A 1 39 GLU 39 405 405 GLU GLU A . n A 1 40 PHE 40 406 406 PHE PHE A . n A 1 41 TYR 41 407 407 TYR TYR A . n A 1 42 CYS 42 408 408 CYS CYS A . n A 1 43 ASP 43 409 409 ASP ASP A . n A 1 44 TYR 44 410 410 TYR TYR A . n A 1 45 ILE 45 411 411 ILE ILE A . n A 1 46 ASP 46 412 412 ASP ASP A . n A 1 47 GLY 47 460 460 GLY GLY A . n A 1 48 GLN 48 461 461 GLN GLN A . n A 1 49 ALA 49 462 462 ALA ALA A . n A 1 50 MSE 50 463 463 MSE MSE A . n A 1 51 ILE 51 464 464 ILE ILE A . n A 1 52 ARG 52 465 465 ARG ARG A . n A 1 53 PHE 53 466 466 PHE PHE A . n A 1 54 GLN 54 467 467 GLN GLN A . n A 1 55 ASN 55 468 468 ASN ASN A . n A 1 56 SER 56 469 469 SER SER A . n A 1 57 ASP 57 470 470 ASP ASP A . n A 1 58 GLU 58 471 471 GLU GLU A . n A 1 59 GLN 59 472 472 GLN GLN A . n A 1 60 ARG 60 473 473 ARG ARG A . n A 1 61 LEU 61 474 474 LEU LEU A . n A 1 62 ALA 62 475 475 ALA ALA A . n A 1 63 ILE 63 476 476 ILE ILE A . n A 1 64 GLN 64 477 477 GLN GLN A . n A 1 65 LYS 65 478 478 LYS LYS A . n A 1 66 LEU 66 479 479 LEU LEU A . n A 1 67 LEU 67 480 480 LEU LEU A . n A 1 68 ASN 68 481 481 ASN ASN A . n A 1 69 HIS 69 482 482 HIS HIS A . n A 1 70 ASN 70 483 483 ASN ASN A . n A 1 71 ASN 71 484 484 ASN ASN A . n A 1 72 ASN 72 485 485 ASN ASN A . n A 1 73 LYS 73 486 486 LYS LYS A . n A 1 74 LEU 74 487 487 LEU LEU A . n A 1 75 GLN 75 488 488 GLN GLN A . n A 1 76 ILE 76 489 489 ILE ILE A . n A 1 77 GLU 77 490 490 GLU GLU A . n A 1 78 ILE 78 491 491 ILE ILE A . n A 1 79 ARG 79 492 492 ARG ARG A . n A 1 80 GLY 80 493 493 GLY GLY A . n A 1 81 GLN 81 494 494 GLN GLN A . n A 1 82 ILE 82 495 495 ILE ILE A . n A 1 83 CYS 83 496 496 CYS CYS A . n A 1 84 ASP 84 497 497 ASP ASP A . n A 1 85 VAL 85 498 498 VAL VAL A . n A 1 86 ILE 86 499 499 ILE ILE A . n A 1 87 SER 87 500 500 SER SER A . n A 1 88 THR 88 501 501 THR THR A . n A 1 89 ILE 89 502 502 ILE ILE A . n A 1 90 PRO 90 503 503 PRO PRO A . n A 1 91 GLU 91 504 504 GLU GLU A . n A 1 92 ASP 92 505 505 ASP ASP A . n A 1 93 GLU 93 506 506 GLU GLU A . n A 1 94 GLU 94 507 507 GLU GLU A . n A 1 95 LYS 95 508 508 LYS LYS A . n A 1 96 ASN 96 509 509 ASN ASN A . n A 1 97 TYR 97 510 510 TYR TYR A . n A 1 98 TRP 98 511 511 TRP TRP A . n A 1 99 ASN 99 512 512 ASN ASN A . n A 1 100 TYR 100 513 513 TYR TYR A . n A 1 101 ILE 101 514 514 ILE ILE A . n A 1 102 LYS 102 515 515 LYS LYS A . n A 1 103 PHE 103 516 516 PHE PHE A . n A 1 104 LYS 104 517 517 LYS LYS A . n A 1 105 LYS 105 518 518 LYS LYS A . n A 1 106 ASN 106 519 519 ASN ASN A . n A 1 107 GLU 107 520 520 GLU GLU A . n A 1 108 PHE 108 521 521 PHE PHE A . n A 1 109 ARG 109 522 522 ARG ARG A . n A 1 110 LYS 110 523 523 LYS LYS A . n A 1 111 PHE 111 524 524 PHE PHE A . n A 1 112 PHE 112 525 525 PHE PHE A . n A 1 113 PHE 113 526 526 PHE PHE A . n A 1 114 MSE 114 527 527 MSE MSE A . n A 1 115 LYS 115 528 528 LYS LYS A . n A 1 116 LYS 116 529 529 LYS LYS A . n A 1 117 GLN 117 530 530 GLN GLN A . n A 1 118 GLN 118 531 531 GLN GLN A . n A 1 119 LYS 119 532 532 LYS LYS A . n A 1 120 LYS 120 533 ? ? ? A . n A 1 121 GLN 121 534 ? ? ? A . n A 1 122 ASN 122 535 ? ? ? A . n A 1 123 ILE 123 536 ? ? ? A . n A 1 124 THR 124 537 ? ? ? A . n A 1 125 GLN 125 538 ? ? ? A . n A 1 126 ASN 126 539 ? ? ? A . n A 1 127 TYR 127 540 ? ? ? A . n A 1 128 ASN 128 541 ? ? ? A . n A 1 129 LYS 129 542 ? ? ? A . n B 1 1 MSE 1 367 ? ? ? B . n B 1 2 HIS 2 368 ? ? ? B . n B 1 3 HIS 3 369 ? ? ? B . n B 1 4 HIS 4 370 ? ? ? B . n B 1 5 HIS 5 371 ? ? ? B . n B 1 6 HIS 6 372 ? ? ? B . n B 1 7 HIS 7 373 ? ? ? B . n B 1 8 SER 8 374 ? ? ? B . n B 1 9 ILE 9 375 ? ? ? B . n B 1 10 LYS 10 376 ? ? ? B . n B 1 11 GLN 11 377 ? ? ? B . n B 1 12 ASN 12 378 378 ASN ASN B . n B 1 13 CYS 13 379 379 CYS CYS B . n B 1 14 LEU 14 380 380 LEU LEU B . n B 1 15 ILE 15 381 381 ILE ILE B . n B 1 16 LYS 16 382 382 LYS LYS B . n B 1 17 ILE 17 383 383 ILE ILE B . n B 1 18 ILE 18 384 384 ILE ILE B . n B 1 19 ASN 19 385 385 ASN ASN B . n B 1 20 ILE 20 386 386 ILE ILE B . n B 1 21 PRO 21 387 387 PRO PRO B . n B 1 22 GLN 22 388 388 GLN GLN B . n B 1 23 GLY 23 389 389 GLY GLY B . n B 1 24 THR 24 390 390 THR THR B . n B 1 25 LEU 25 391 391 LEU LEU B . n B 1 26 LYS 26 392 392 LYS LYS B . n B 1 27 ALA 27 393 393 ALA ALA B . n B 1 28 GLU 28 394 394 GLU GLU B . n B 1 29 VAL 29 395 395 VAL VAL B . n B 1 30 VAL 30 396 396 VAL VAL B . n B 1 31 LEU 31 397 397 LEU LEU B . n B 1 32 ALA 32 398 398 ALA ALA B . n B 1 33 VAL 33 399 399 VAL VAL B . n B 1 34 ARG 34 400 400 ARG ARG B . n B 1 35 HIS 35 401 401 HIS HIS B . n B 1 36 LEU 36 402 402 LEU LEU B . n B 1 37 GLY 37 403 403 GLY GLY B . n B 1 38 TYR 38 404 404 TYR TYR B . n B 1 39 GLU 39 405 405 GLU GLU B . n B 1 40 PHE 40 406 406 PHE PHE B . n B 1 41 TYR 41 407 407 TYR TYR B . n B 1 42 CYS 42 408 408 CYS CYS B . n B 1 43 ASP 43 409 409 ASP ASP B . n B 1 44 TYR 44 410 410 TYR TYR B . n B 1 45 ILE 45 411 411 ILE ILE B . n B 1 46 ASP 46 412 412 ASP ASP B . n B 1 47 GLY 47 460 460 GLY GLY B . n B 1 48 GLN 48 461 461 GLN GLN B . n B 1 49 ALA 49 462 462 ALA ALA B . n B 1 50 MSE 50 463 463 MSE MSE B . n B 1 51 ILE 51 464 464 ILE ILE B . n B 1 52 ARG 52 465 465 ARG ARG B . n B 1 53 PHE 53 466 466 PHE PHE B . n B 1 54 GLN 54 467 467 GLN GLN B . n B 1 55 ASN 55 468 468 ASN ASN B . n B 1 56 SER 56 469 469 SER SER B . n B 1 57 ASP 57 470 470 ASP ASP B . n B 1 58 GLU 58 471 471 GLU GLU B . n B 1 59 GLN 59 472 472 GLN GLN B . n B 1 60 ARG 60 473 473 ARG ARG B . n B 1 61 LEU 61 474 474 LEU LEU B . n B 1 62 ALA 62 475 475 ALA ALA B . n B 1 63 ILE 63 476 476 ILE ILE B . n B 1 64 GLN 64 477 477 GLN GLN B . n B 1 65 LYS 65 478 478 LYS LYS B . n B 1 66 LEU 66 479 479 LEU LEU B . n B 1 67 LEU 67 480 480 LEU LEU B . n B 1 68 ASN 68 481 481 ASN ASN B . n B 1 69 HIS 69 482 482 HIS HIS B . n B 1 70 ASN 70 483 483 ASN ASN B . n B 1 71 ASN 71 484 484 ASN ASN B . n B 1 72 ASN 72 485 485 ASN ASN B . n B 1 73 LYS 73 486 486 LYS LYS B . n B 1 74 LEU 74 487 487 LEU LEU B . n B 1 75 GLN 75 488 488 GLN GLN B . n B 1 76 ILE 76 489 489 ILE ILE B . n B 1 77 GLU 77 490 490 GLU GLU B . n B 1 78 ILE 78 491 491 ILE ILE B . n B 1 79 ARG 79 492 492 ARG ARG B . n B 1 80 GLY 80 493 493 GLY GLY B . n B 1 81 GLN 81 494 494 GLN GLN B . n B 1 82 ILE 82 495 495 ILE ILE B . n B 1 83 CYS 83 496 496 CYS CYS B . n B 1 84 ASP 84 497 497 ASP ASP B . n B 1 85 VAL 85 498 498 VAL VAL B . n B 1 86 ILE 86 499 499 ILE ILE B . n B 1 87 SER 87 500 500 SER SER B . n B 1 88 THR 88 501 501 THR THR B . n B 1 89 ILE 89 502 502 ILE ILE B . n B 1 90 PRO 90 503 503 PRO PRO B . n B 1 91 GLU 91 504 504 GLU GLU B . n B 1 92 ASP 92 505 505 ASP ASP B . n B 1 93 GLU 93 506 506 GLU GLU B . n B 1 94 GLU 94 507 507 GLU GLU B . n B 1 95 LYS 95 508 508 LYS LYS B . n B 1 96 ASN 96 509 509 ASN ASN B . n B 1 97 TYR 97 510 510 TYR TYR B . n B 1 98 TRP 98 511 511 TRP TRP B . n B 1 99 ASN 99 512 512 ASN ASN B . n B 1 100 TYR 100 513 513 TYR TYR B . n B 1 101 ILE 101 514 514 ILE ILE B . n B 1 102 LYS 102 515 515 LYS LYS B . n B 1 103 PHE 103 516 516 PHE PHE B . n B 1 104 LYS 104 517 517 LYS LYS B . n B 1 105 LYS 105 518 518 LYS LYS B . n B 1 106 ASN 106 519 519 ASN ASN B . n B 1 107 GLU 107 520 520 GLU GLU B . n B 1 108 PHE 108 521 521 PHE PHE B . n B 1 109 ARG 109 522 522 ARG ARG B . n B 1 110 LYS 110 523 523 LYS LYS B . n B 1 111 PHE 111 524 524 PHE PHE B . n B 1 112 PHE 112 525 525 PHE PHE B . n B 1 113 PHE 113 526 526 PHE PHE B . n B 1 114 MSE 114 527 527 MSE MSE B . n B 1 115 LYS 115 528 528 LYS LYS B . n B 1 116 LYS 116 529 529 LYS LYS B . n B 1 117 GLN 117 530 530 GLN GLN B . n B 1 118 GLN 118 531 531 GLN GLN B . n B 1 119 LYS 119 532 532 LYS LYS B . n B 1 120 LYS 120 533 ? ? ? B . n B 1 121 GLN 121 534 ? ? ? B . n B 1 122 ASN 122 535 ? ? ? B . n B 1 123 ILE 123 536 ? ? ? B . n B 1 124 THR 124 537 ? ? ? B . n B 1 125 GLN 125 538 ? ? ? B . n B 1 126 ASN 126 539 ? ? ? B . n B 1 127 TYR 127 540 ? ? ? B . n B 1 128 ASN 128 541 ? ? ? B . n B 1 129 LYS 129 542 ? ? ? B . n C 2 1 G 1 117 117 G G C . n C 2 2 G 2 118 118 G G C . n C 2 3 U 3 119 119 U U C . n C 2 4 C 4 120 120 C C C . n C 2 5 G 5 121 121 G G C . n C 2 6 A 6 122 122 A A C . n C 2 7 C 7 123 123 C C C . n C 2 8 A 8 124 124 A A C . n C 2 9 U 9 125 125 U U C . n C 2 10 C 10 126 126 C C C . n C 2 11 U 11 127 127 U U C . n C 2 12 U 12 128 128 U U C . n C 2 13 C 13 141 141 C C C . n C 2 14 G 14 142 142 G G C . n C 2 15 G 15 143 143 G G C . n C 2 16 A 16 144 144 A A C . n C 2 17 U 17 145 145 U U C . n C 2 18 G 18 146 146 G G C . n C 2 19 G 19 147 147 G G C . n C 2 20 A 20 148 148 A A C . n C 2 21 C 21 149 149 C C C . n C 2 22 C 22 150 150 C C C . n D 2 1 G 1 117 117 G G D . n D 2 2 G 2 118 118 G G D . n D 2 3 U 3 119 119 U U D . n D 2 4 C 4 120 120 C C D . n D 2 5 G 5 121 121 G G D . n D 2 6 A 6 122 122 A A D . n D 2 7 C 7 123 123 C C D . n D 2 8 A 8 124 124 A A D . n D 2 9 U 9 125 125 U U D . n D 2 10 C 10 126 126 C C D . n D 2 11 U 11 127 127 U U D . n D 2 12 U 12 128 128 U U D . n D 2 13 C 13 141 141 C C D . n D 2 14 G 14 142 142 G G D . n D 2 15 G 15 143 143 G G D . n D 2 16 A 16 144 144 A A D . n D 2 17 U 17 145 145 U U D . n D 2 18 G 18 146 146 G G D . n D 2 19 G 19 147 147 G G D . n D 2 20 A 20 148 148 A A D . n D 2 21 C 21 149 149 C C D . n D 2 22 C 22 150 150 C C D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 K 1 601 1 K K A . F 4 HOH 1 701 1 HOH HOH A . F 4 HOH 2 702 2 HOH HOH A . F 4 HOH 3 703 3 HOH HOH A . F 4 HOH 4 704 6 HOH HOH A . F 4 HOH 5 705 12 HOH HOH A . F 4 HOH 6 706 14 HOH HOH A . F 4 HOH 7 707 23 HOH HOH A . F 4 HOH 8 708 25 HOH HOH A . F 4 HOH 9 709 29 HOH HOH A . F 4 HOH 10 710 31 HOH HOH A . G 4 HOH 1 601 8 HOH HOH B . G 4 HOH 2 602 13 HOH HOH B . G 4 HOH 3 603 18 HOH HOH B . G 4 HOH 4 604 33 HOH HOH B . H 4 HOH 1 201 5 HOH HOH C . H 4 HOH 2 202 9 HOH HOH C . H 4 HOH 3 203 21 HOH HOH C . H 4 HOH 4 204 28 HOH HOH C . I 4 HOH 1 201 4 HOH HOH D . I 4 HOH 2 202 7 HOH HOH D . I 4 HOH 3 203 27 HOH HOH D . I 4 HOH 4 204 30 HOH HOH D . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 50 A MSE 463 ? MET SELENOMETHIONINE 2 A MSE 114 A MSE 527 ? MET SELENOMETHIONINE 3 B MSE 50 B MSE 463 ? MET SELENOMETHIONINE 4 B MSE 114 B MSE 527 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? trimeric 3 2 author_defined_assembly ? trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,F,H,I 2 1 B,C,D,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5790 ? 1 MORE -30 ? 1 'SSA (A^2)' 20450 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 701 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id F _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-06-20 2 'Structure model' 1 1 2012-07-04 3 'Structure model' 1 2 2012-08-01 4 'Structure model' 1 3 2014-04-23 5 'Structure model' 1 4 2017-07-26 6 'Structure model' 1 5 2017-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Derived calculations' 4 5 'Structure model' 'Source and taxonomy' 5 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' entity_src_gen 2 6 'Structure model' software # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 6 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_software.name' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 59.4449 _pdbx_refine_tls.origin_y 51.4566 _pdbx_refine_tls.origin_z 60.2417 _pdbx_refine_tls.T[1][1] 0.1825 _pdbx_refine_tls.T[2][2] 0.1779 _pdbx_refine_tls.T[3][3] 0.1934 _pdbx_refine_tls.T[1][2] 0.0282 _pdbx_refine_tls.T[1][3] -0.0362 _pdbx_refine_tls.T[2][3] -0.0405 _pdbx_refine_tls.L[1][1] 2.2386 _pdbx_refine_tls.L[2][2] 0.3170 _pdbx_refine_tls.L[3][3] 0.8310 _pdbx_refine_tls.L[1][2] 0.5222 _pdbx_refine_tls.L[1][3] -0.5194 _pdbx_refine_tls.L[2][3] 0.1567 _pdbx_refine_tls.S[1][1] -0.0156 _pdbx_refine_tls.S[1][2] 0.2384 _pdbx_refine_tls.S[1][3] 0.0358 _pdbx_refine_tls.S[2][1] -0.0414 _pdbx_refine_tls.S[2][2] 0.0870 _pdbx_refine_tls.S[2][3] -0.0440 _pdbx_refine_tls.S[3][1] -0.1314 _pdbx_refine_tls.S[3][2] 0.0230 _pdbx_refine_tls.S[3][3] -0.0417 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 378 A 711 all ? ? ? ? ? 'X-RAY DIFFRACTION' 2 1 C 117 C 203 all ? ? ? ? ? 'X-RAY DIFFRACTION' 3 1 B 378 B 605 all ? ? ? ? ? 'X-RAY DIFFRACTION' 4 1 D 117 D 203 all ? ? ? ? ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 PHENIX 1.7.3_928 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 ADSC Quantum ? ? ? ? 'data collection' ? ? ? 4 DENZO . ? ? ? ? 'data reduction' ? ? ? 5 SCALEPACK . ? ? ? ? 'data scaling' ? ? ? 6 HKL2Map . ? ? ? ? phasing ? ? ? # _pdbx_entry_details.entry_id 4ERD _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'PROTEIN CONSTRUCT COMPRISES THE C-TERMINAL DOMAIN OF P65 XRRM2 (UNP RESIDUES 375-542) WITH THE LOOP (UNP RESIDUES 413-459) DELETED.' _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE B 411 ? ? -127.26 -56.60 2 1 GLN B 531 ? ? -140.92 -18.03 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 367 ? A MSE 1 2 1 Y 1 A HIS 368 ? A HIS 2 3 1 Y 1 A HIS 369 ? A HIS 3 4 1 Y 1 A HIS 370 ? A HIS 4 5 1 Y 1 A HIS 371 ? A HIS 5 6 1 Y 1 A HIS 372 ? A HIS 6 7 1 Y 1 A HIS 373 ? A HIS 7 8 1 Y 1 A SER 374 ? A SER 8 9 1 Y 1 A ILE 375 ? A ILE 9 10 1 Y 1 A LYS 376 ? A LYS 10 11 1 Y 1 A GLN 377 ? A GLN 11 12 1 Y 1 A LYS 533 ? A LYS 120 13 1 Y 1 A GLN 534 ? A GLN 121 14 1 Y 1 A ASN 535 ? A ASN 122 15 1 Y 1 A ILE 536 ? A ILE 123 16 1 Y 1 A THR 537 ? A THR 124 17 1 Y 1 A GLN 538 ? A GLN 125 18 1 Y 1 A ASN 539 ? A ASN 126 19 1 Y 1 A TYR 540 ? A TYR 127 20 1 Y 1 A ASN 541 ? A ASN 128 21 1 Y 1 A LYS 542 ? A LYS 129 22 1 Y 1 B MSE 367 ? B MSE 1 23 1 Y 1 B HIS 368 ? B HIS 2 24 1 Y 1 B HIS 369 ? B HIS 3 25 1 Y 1 B HIS 370 ? B HIS 4 26 1 Y 1 B HIS 371 ? B HIS 5 27 1 Y 1 B HIS 372 ? B HIS 6 28 1 Y 1 B HIS 373 ? B HIS 7 29 1 Y 1 B SER 374 ? B SER 8 30 1 Y 1 B ILE 375 ? B ILE 9 31 1 Y 1 B LYS 376 ? B LYS 10 32 1 Y 1 B GLN 377 ? B GLN 11 33 1 Y 1 B LYS 533 ? B LYS 120 34 1 Y 1 B GLN 534 ? B GLN 121 35 1 Y 1 B ASN 535 ? B ASN 122 36 1 Y 1 B ILE 536 ? B ILE 123 37 1 Y 1 B THR 537 ? B THR 124 38 1 Y 1 B GLN 538 ? B GLN 125 39 1 Y 1 B ASN 539 ? B ASN 126 40 1 Y 1 B TYR 540 ? B TYR 127 41 1 Y 1 B ASN 541 ? B ASN 128 42 1 Y 1 B LYS 542 ? B LYS 129 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4ERD 'double helix' 4ERD 'a-form double helix' 4ERD 'bulge loop' 4ERD 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C G 1 1_555 D C 22 1_555 -0.660 -0.264 -0.387 -8.740 -10.190 -0.454 1 C_G117:C150_D C 117 ? D 150 ? 19 1 1 C G 2 1_555 D C 21 1_555 -0.502 -0.142 -0.209 -14.127 -17.041 1.171 2 C_G118:C149_D C 118 ? D 149 ? 19 1 1 C U 3 1_555 D A 20 1_555 0.398 -0.246 -0.294 -2.052 -13.348 0.472 3 C_U119:A148_D C 119 ? D 148 ? 20 1 1 C C 4 1_555 D G 19 1_555 0.444 -0.039 -0.026 3.333 -6.703 3.094 4 C_C120:G147_D C 120 ? D 147 ? 19 1 1 C C 7 1_555 D G 18 1_555 0.230 -0.138 -0.071 -10.073 -4.663 -0.818 5 C_C123:G146_D C 123 ? D 146 ? 19 1 1 C A 8 1_555 D U 17 1_555 -0.474 -0.083 0.046 4.939 -17.770 4.785 6 C_A124:U145_D C 124 ? D 145 ? 20 1 1 C U 9 1_555 D A 16 1_555 -0.234 -0.195 -0.201 5.807 -14.809 2.627 7 C_U125:A144_D C 125 ? D 144 ? 20 1 1 C C 10 1_555 D G 15 1_555 0.591 -0.147 -0.479 5.174 -14.941 5.359 8 C_C126:G143_D C 126 ? D 143 ? 19 1 1 C U 11 1_555 D G 14 1_555 2.783 -0.556 -0.220 0.260 -5.489 -0.320 9 C_U127:G142_D C 127 ? D 142 ? 28 1 1 C U 12 1_555 D C 13 1_555 -0.451 0.374 -0.393 -7.491 6.976 -35.985 10 C_U128:C141_D C 128 ? D 141 ? ? ? 1 C C 13 1_555 D U 12 1_555 0.633 0.288 -0.679 16.601 2.342 -34.945 11 C_C141:U128_D C 141 ? D 128 ? ? ? 1 C G 14 1_555 D U 11 1_555 -1.849 -0.084 -0.178 -2.884 -1.332 4.047 12 C_G142:U127_D C 142 ? D 127 ? 28 1 1 C G 15 1_555 D C 10 1_555 -0.782 -0.001 -0.287 -6.935 -11.053 3.437 13 C_G143:C126_D C 143 ? D 126 ? 19 1 1 C A 16 1_555 D U 9 1_555 0.168 0.034 -0.276 -11.673 -17.630 -0.593 14 C_A144:U125_D C 144 ? D 125 ? 20 1 1 C U 17 1_555 D A 8 1_555 -0.431 -0.085 -0.118 -1.421 -15.828 0.472 15 C_U145:A124_D C 145 ? D 124 ? 20 1 1 C G 18 1_555 D C 7 1_555 0.142 -0.015 -0.037 11.807 -4.026 1.259 16 C_G146:C123_D C 146 ? D 123 ? 19 1 1 C G 19 1_555 D C 4 1_555 -0.081 5.015 0.093 6.093 -5.343 -81.950 17 C_G147:C120_D C 147 ? D 120 ? ? ? 1 C A 20 1_555 D U 3 1_555 -0.066 -0.205 -0.184 4.583 -14.856 -2.733 18 C_A148:U119_D C 148 ? D 119 ? 20 1 1 C C 21 1_555 D G 2 1_555 -0.014 -0.290 -0.304 11.219 -15.173 -1.239 19 C_C149:G118_D C 149 ? D 118 ? 19 1 1 C C 22 1_555 D G 1 1_555 0.384 -0.196 -0.226 8.414 -9.074 -0.841 20 C_C150:G117_D C 150 ? D 117 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C G 1 1_555 D C 22 1_555 C G 2 1_555 D C 21 1_555 -0.215 -1.620 3.486 -2.867 8.156 34.432 -3.871 -0.073 3.043 13.515 4.750 35.469 1 CC_G117G118:C149C150_DD C 117 ? D 150 ? C 118 ? D 149 ? 1 C G 2 1_555 D C 21 1_555 C U 3 1_555 D A 20 1_555 -0.141 -1.206 2.994 0.762 4.725 35.390 -2.577 0.329 2.811 7.730 -1.246 35.702 2 CC_G118U119:A148C149_DD C 118 ? D 149 ? C 119 ? D 148 ? 1 C U 3 1_555 D A 20 1_555 C C 4 1_555 D G 19 1_555 0.947 -1.437 3.053 3.487 9.339 31.080 -4.003 -1.148 2.612 16.892 -6.308 32.602 3 CC_U119C120:G147A148_DD C 119 ? D 148 ? C 120 ? D 147 ? 1 C C 7 1_555 D G 18 1_555 C A 8 1_555 D U 17 1_555 0.653 -1.506 2.858 1.023 13.033 24.078 -5.661 -1.187 1.838 28.694 -2.253 27.352 4 CC_C123A124:U145G146_DD C 123 ? D 146 ? C 124 ? D 145 ? 1 C A 8 1_555 D U 17 1_555 C U 9 1_555 D A 16 1_555 -0.559 -1.214 3.156 0.357 10.508 35.703 -3.184 0.921 2.698 16.697 -0.568 37.170 5 CC_A124U125:A144U145_DD C 124 ? D 145 ? C 125 ? D 144 ? 1 C U 9 1_555 D A 16 1_555 C C 10 1_555 D G 15 1_555 0.328 -0.976 3.193 2.798 11.659 34.272 -3.097 -0.160 2.744 19.075 -4.577 36.250 6 CC_U125C126:G143A144_DD C 125 ? D 144 ? C 126 ? D 143 ? 1 C C 10 1_555 D G 15 1_555 C U 11 1_555 D G 14 1_555 0.263 -1.620 3.475 0.370 6.399 40.802 -3.004 -0.332 3.199 9.110 -0.526 41.281 7 CC_C126U127:G142G143_DD C 126 ? D 143 ? C 127 ? D 142 ? 1 C U 11 1_555 D G 14 1_555 C U 12 1_555 D C 13 1_555 -3.739 -2.327 3.531 1.544 16.899 17.541 -9.535 9.227 0.715 44.191 -4.036 24.360 8 CC_U127U128:C141G142_DD C 127 ? D 142 ? C 128 ? D 141 ? 1 C U 12 1_555 D C 13 1_555 C C 13 1_555 D U 12 1_555 0.253 -1.541 2.734 0.567 2.389 34.441 -2.899 -0.354 2.628 4.029 -0.955 34.526 9 CC_U128C141:U128C141_DD C 128 ? D 141 ? C 141 ? D 128 ? 1 C C 13 1_555 D U 12 1_555 C G 14 1_555 D U 11 1_555 2.936 -1.849 3.752 -3.797 21.334 26.076 -6.304 -5.607 1.442 39.686 7.064 33.784 10 CC_C141G142:U127U128_DD C 141 ? D 128 ? C 142 ? D 127 ? 1 C G 14 1_555 D U 11 1_555 C G 15 1_555 D C 10 1_555 -0.237 -1.590 3.383 -2.077 8.203 33.712 -3.895 0.085 2.936 13.874 3.513 34.728 11 CC_G142G143:C126U127_DD C 142 ? D 127 ? C 143 ? D 126 ? 1 C G 15 1_555 D C 10 1_555 C A 16 1_555 D U 9 1_555 -0.335 -1.411 3.455 -0.914 5.961 36.373 -3.060 0.403 3.199 9.469 1.453 36.853 12 CC_G143A144:U125C126_DD C 143 ? D 126 ? C 144 ? D 125 ? 1 C A 16 1_555 D U 9 1_555 C U 17 1_555 D A 8 1_555 0.823 -1.877 2.951 3.409 0.606 28.995 -3.843 -0.957 2.987 1.206 -6.778 29.197 13 CC_A144U145:A124U125_DD C 144 ? D 125 ? C 145 ? D 124 ? 1 C U 17 1_555 D A 8 1_555 C G 18 1_555 D C 7 1_555 -0.638 -1.806 2.965 -1.602 15.434 27.752 -5.505 0.938 1.773 29.443 3.055 31.721 14 CC_U145G146:C123A124_DD C 145 ? D 124 ? C 146 ? D 123 ? 1 C G 19 1_555 D C 4 1_555 C A 20 1_555 D U 3 1_555 -1.806 0.910 3.119 3.299 6.603 -10.548 -11.176 -4.504 2.554 -31.361 15.669 -12.868 15 CC_G147A148:U119C120_DD C 147 ? D 120 ? C 148 ? D 119 ? 1 C A 20 1_555 D U 3 1_555 C C 21 1_555 D G 2 1_555 0.077 -1.345 3.138 -0.236 3.061 33.161 -2.827 -0.171 3.005 5.348 0.413 33.298 16 CC_A148C149:G118U119_DD C 148 ? D 119 ? C 149 ? D 118 ? 1 C C 21 1_555 D G 2 1_555 C C 22 1_555 D G 1 1_555 0.146 -1.664 3.395 0.832 7.152 35.324 -3.696 -0.120 3.015 11.636 -1.353 36.027 17 CC_C149C150:G117G118_DD C 149 ? D 118 ? C 150 ? D 117 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'POTASSIUM ION' K 4 water HOH #