HEADER TRANSFERASE 23-APR-12 4ESH TITLE THE CRYSTAL STRUCTURE OF THYMIDYLATE KINASE FROM PSEUDOMONAS TITLE 2 AERUGINOSA PAO1 IN COMPLEX WITH DEOXYTHYMIDINE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DTMP KINASE; COMPND 5 EC: 2.7.4.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PAO1; SOURCE 5 GENE: PA2962, PSEUDOMONAS AERUGINOSA, TMK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS THYMIDYLATE KINASE, STRUCTURAL GENOMICS, PSI-BIOLOGY, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 STRUCTURES OF MTB PROTEINS CONFERRING SUSCEPTIBILITY TO KNOWN MTB KEYWDS 4 INHIBITORS (MTBI), TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,G.JOACHIMIAK,R.JEDRZEJCZAK,J.SACCHETTINI,A.JOACHIMIAK,MIDWEST AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (MCSG),STRUCTURES OF MTB PROTEINS AUTHOR 3 CONFERRING SUSCEPTIBILITY TO KNOWN MTB INHIBITORS (MTBI) REVDAT 2 13-SEP-23 4ESH 1 REMARK SEQADV REVDAT 1 23-MAY-12 4ESH 0 JRNL AUTH K.TAN,G.JOACHIMIAK,R.JEDRZEJCZAK,J.SACCHETTINI,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF THYMIDYLATE KINASE FROM PSEUDOMONAS JRNL TITL 2 AERUGINOSA PAO1 IN COMPLEX WITH DEOXYTHYMIDINE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 15434 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 773 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.7954 - 3.5388 0.98 2551 116 0.1689 0.1935 REMARK 3 2 3.5388 - 2.8092 1.00 2447 147 0.1800 0.2288 REMARK 3 3 2.8092 - 2.4542 1.00 2445 117 0.2011 0.2637 REMARK 3 4 2.4542 - 2.2298 1.00 2422 136 0.1859 0.2841 REMARK 3 5 2.2298 - 2.0700 1.00 2407 123 0.1990 0.2117 REMARK 3 6 2.0700 - 1.9480 1.00 2389 134 0.2180 0.2865 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 48.04 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.490 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.67200 REMARK 3 B22 (A**2) : 2.67200 REMARK 3 B33 (A**2) : -5.34410 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1697 REMARK 3 ANGLE : 0.996 2309 REMARK 3 CHIRALITY : 0.065 259 REMARK 3 PLANARITY : 0.005 313 REMARK 3 DIHEDRAL : 12.958 659 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ -1:15) REMARK 3 ORIGIN FOR THE GROUP (A): -26.4467 22.5059 19.0026 REMARK 3 T TENSOR REMARK 3 T11: 0.2209 T22: 0.3777 REMARK 3 T33: 0.2811 T12: 0.0072 REMARK 3 T13: -0.0471 T23: -0.0226 REMARK 3 L TENSOR REMARK 3 L11: 6.4159 L22: 7.4778 REMARK 3 L33: 0.5173 L12: -0.4012 REMARK 3 L13: -1.2456 L23: 0.4321 REMARK 3 S TENSOR REMARK 3 S11: -0.0121 S12: -0.8743 S13: 0.4494 REMARK 3 S21: -0.0077 S22: 0.5264 S23: -0.5282 REMARK 3 S31: -0.1970 S32: 1.0869 S33: -0.4200 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 16:30) REMARK 3 ORIGIN FOR THE GROUP (A): -18.7279 32.0297 19.1703 REMARK 3 T TENSOR REMARK 3 T11: 0.6007 T22: 0.3067 REMARK 3 T33: 0.5100 T12: -0.0625 REMARK 3 T13: -0.0063 T23: 0.0586 REMARK 3 L TENSOR REMARK 3 L11: 8.5114 L22: 1.8722 REMARK 3 L33: 9.1320 L12: 2.2055 REMARK 3 L13: 1.0606 L23: 3.1612 REMARK 3 S TENSOR REMARK 3 S11: -0.1533 S12: 0.3979 S13: 1.1028 REMARK 3 S21: -0.7444 S22: 0.1231 S23: -0.3976 REMARK 3 S31: -1.6695 S32: 0.4210 S33: 0.0776 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 31:62) REMARK 3 ORIGIN FOR THE GROUP (A): -16.6789 9.2690 17.5123 REMARK 3 T TENSOR REMARK 3 T11: 0.1915 T22: 0.2793 REMARK 3 T33: 0.2508 T12: -0.0309 REMARK 3 T13: 0.0181 T23: 0.0292 REMARK 3 L TENSOR REMARK 3 L11: 1.1433 L22: 5.7771 REMARK 3 L33: 2.4709 L12: 1.1048 REMARK 3 L13: 0.5195 L23: 2.2184 REMARK 3 S TENSOR REMARK 3 S11: 0.0079 S12: 0.0766 S13: 0.0207 REMARK 3 S21: -0.0664 S22: 0.0886 S23: -0.3488 REMARK 3 S31: -0.0294 S32: 0.2855 S33: -0.1570 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 63:136) REMARK 3 ORIGIN FOR THE GROUP (A): -28.6733 11.8142 17.2922 REMARK 3 T TENSOR REMARK 3 T11: 0.2110 T22: 0.2682 REMARK 3 T33: 0.2414 T12: 0.0103 REMARK 3 T13: 0.0111 T23: 0.0182 REMARK 3 L TENSOR REMARK 3 L11: 1.2022 L22: 2.6477 REMARK 3 L33: 2.3675 L12: -0.0226 REMARK 3 L13: 0.3246 L23: 0.7121 REMARK 3 S TENSOR REMARK 3 S11: -0.0119 S12: -0.0650 S13: 0.0056 REMARK 3 S21: -0.0871 S22: 0.0366 S23: 0.0467 REMARK 3 S31: -0.1356 S32: 0.0109 S33: -0.0196 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 137:159) REMARK 3 ORIGIN FOR THE GROUP (A): -15.5919 12.7566 0.6995 REMARK 3 T TENSOR REMARK 3 T11: 0.5173 T22: 0.7412 REMARK 3 T33: 0.5310 T12: -0.0563 REMARK 3 T13: 0.0931 T23: 0.0701 REMARK 3 L TENSOR REMARK 3 L11: 2.2702 L22: 7.4062 REMARK 3 L33: 5.2030 L12: -2.3964 REMARK 3 L13: 2.2941 L23: -3.7960 REMARK 3 S TENSOR REMARK 3 S11: -0.0740 S12: 0.7338 S13: 0.6289 REMARK 3 S21: 0.2350 S22: -0.6117 S23: -1.2176 REMARK 3 S31: -0.6421 S32: 1.5726 S33: 0.6446 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 160:176) REMARK 3 ORIGIN FOR THE GROUP (A): -29.5482 15.5184 1.4902 REMARK 3 T TENSOR REMARK 3 T11: 0.3321 T22: 0.2809 REMARK 3 T33: 0.2869 T12: -0.0276 REMARK 3 T13: -0.0264 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 4.1226 L22: 4.0540 REMARK 3 L33: 8.4099 L12: -3.9113 REMARK 3 L13: -4.8719 L23: 3.6472 REMARK 3 S TENSOR REMARK 3 S11: -0.1922 S12: 0.6895 S13: -0.3238 REMARK 3 S21: -0.3672 S22: -0.3744 S23: 0.2285 REMARK 3 S31: -0.3543 S32: -0.4621 S33: 0.5358 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 177:189) REMARK 3 ORIGIN FOR THE GROUP (A): -31.1655 26.9160 8.3506 REMARK 3 T TENSOR REMARK 3 T11: 0.6023 T22: 0.4245 REMARK 3 T33: 0.3613 T12: 0.0335 REMARK 3 T13: -0.0205 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 8.1362 L22: 4.9200 REMARK 3 L33: 4.9341 L12: 5.0088 REMARK 3 L13: -2.2259 L23: -3.1323 REMARK 3 S TENSOR REMARK 3 S11: -0.2866 S12: 0.3032 S13: 1.6479 REMARK 3 S21: -0.9594 S22: 0.4012 S23: 0.5397 REMARK 3 S31: -0.7405 S32: -0.3893 S33: -0.0810 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 190:209) REMARK 3 ORIGIN FOR THE GROUP (A): -27.8121 34.8562 16.4009 REMARK 3 T TENSOR REMARK 3 T11: 0.7915 T22: 0.4290 REMARK 3 T33: 0.9287 T12: 0.0378 REMARK 3 T13: -0.2987 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 6.3786 L22: 7.3964 REMARK 3 L33: 4.9837 L12: 0.6814 REMARK 3 L13: -1.1665 L23: -1.3274 REMARK 3 S TENSOR REMARK 3 S11: -0.1623 S12: 0.6185 S13: 0.7199 REMARK 3 S21: -1.2557 S22: 0.2198 S23: 1.4462 REMARK 3 S31: -1.5442 S32: -1.1045 S33: 0.0768 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ESH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000072013. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15472 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 37.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 38.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.68700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4E5U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8M LITHIUM CHLORIDE, 0.1M TRIS:HCL, REMARK 280 32% (W/V) PEG4000, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.51133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.25567 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 38.25567 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 76.51133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: IT IS PREDICTED TO BE MONOMERIC. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 38.25567 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ALA A 146 REMARK 465 ALA A 147 REMARK 465 ALA A 148 REMARK 465 ARG A 149 REMARK 465 GLY A 210 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 151 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 81 -55.79 -129.63 REMARK 500 ARG A 96 139.38 81.63 REMARK 500 PHE A 97 -148.16 -155.96 REMARK 500 PRO A 189 157.15 -39.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE THM A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4E5U RELATED DB: PDB REMARK 900 IN COMPLEX WITH TMP REMARK 900 RELATED ID: 4EDH RELATED DB: PDB REMARK 900 IN COMPLEX WITH ADP,TMP AND MG. REMARK 900 RELATED ID: MCSG-APC105732 RELATED DB: TARGETTRACK DBREF 4ESH A 1 210 UNP Q9HZN8 KTHY_PSEAE 1 210 SEQADV 4ESH SER A -2 UNP Q9HZN8 EXPRESSION TAG SEQADV 4ESH ASN A -1 UNP Q9HZN8 EXPRESSION TAG SEQADV 4ESH ALA A 0 UNP Q9HZN8 EXPRESSION TAG SEQRES 1 A 213 SER ASN ALA MET THR GLY LEU PHE VAL THR LEU GLU GLY SEQRES 2 A 213 PRO GLU GLY ALA GLY LYS SER THR ASN ARG ASP TYR LEU SEQRES 3 A 213 ALA GLU ARG LEU ARG GLU ARG GLY ILE GLU VAL GLN LEU SEQRES 4 A 213 THR ARG GLU PRO GLY GLY THR PRO LEU ALA GLU ARG ILE SEQRES 5 A 213 ARG GLU LEU LEU LEU ALA PRO SER ASP GLU PRO MET ALA SEQRES 6 A 213 ALA ASP THR GLU LEU LEU LEU MET PHE ALA ALA ARG ALA SEQRES 7 A 213 GLN HIS LEU ALA GLY VAL ILE ARG PRO ALA LEU ALA ARG SEQRES 8 A 213 GLY ALA VAL VAL LEU CYS ASP ARG PHE THR ASP ALA THR SEQRES 9 A 213 TYR ALA TYR GLN GLY GLY GLY ARG GLY LEU PRO GLU ALA SEQRES 10 A 213 ARG ILE ALA ALA LEU GLU SER PHE VAL GLN GLY ASP LEU SEQRES 11 A 213 ARG PRO ASP LEU THR LEU VAL PHE ASP LEU PRO VAL GLU SEQRES 12 A 213 ILE GLY LEU ALA ARG ALA ALA ALA ARG GLY ARG LEU ASP SEQRES 13 A 213 ARG PHE GLU GLN GLU ASP ARG ARG PHE PHE GLU ALA VAL SEQRES 14 A 213 ARG GLN THR TYR LEU GLN ARG ALA ALA GLN ALA PRO GLU SEQRES 15 A 213 ARG TYR GLN VAL LEU ASP ALA GLY LEU PRO LEU ALA GLU SEQRES 16 A 213 VAL GLN ALA GLY LEU ASP ARG LEU LEU PRO ASN LEU LEU SEQRES 17 A 213 GLU ARG LEU ASN GLY HET THM A 301 17 HETNAM THM THYMIDINE HETSYN THM DEOXYTHYMIDINE; 2'-DEOXYTHYMIDINE FORMUL 2 THM C10 H14 N2 O5 FORMUL 3 HOH *78(H2 O) HELIX 1 1 GLY A 15 ARG A 30 1 16 HELIX 2 2 THR A 43 ALA A 55 1 13 HELIX 3 3 ALA A 62 VAL A 81 1 20 HELIX 4 4 VAL A 81 ARG A 88 1 8 HELIX 5 5 PHE A 97 GLN A 105 1 9 HELIX 6 6 PRO A 112 GLY A 125 1 14 HELIX 7 7 ASP A 159 ALA A 177 1 19 HELIX 8 8 PRO A 189 ASN A 209 1 21 SHEET 1 A 5 VAL A 34 ARG A 38 0 SHEET 2 A 5 VAL A 91 ASP A 95 1 O ASP A 95 N THR A 37 SHEET 3 A 5 LEU A 4 GLU A 9 1 N LEU A 4 O VAL A 92 SHEET 4 A 5 LEU A 131 ASP A 136 1 O PHE A 135 N GLU A 9 SHEET 5 A 5 TYR A 181 ASP A 185 1 O LEU A 184 N VAL A 134 CISPEP 1 GLU A 39 PRO A 40 0 -8.31 SITE 1 AC1 12 GLU A 39 PRO A 40 MET A 70 ARG A 74 SITE 2 AC1 12 ARG A 96 ALA A 100 THR A 101 TYR A 104 SITE 3 AC1 12 GLN A 105 PHE A 155 HOH A 402 HOH A 428 CRYST1 55.352 55.352 114.767 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018066 0.010431 0.000000 0.00000 SCALE2 0.000000 0.020861 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008713 0.00000