HEADER IMMUNE SYSTEM 23-APR-12 4ESK TITLE CRYSTAL STRUCTURE OF A STRAND-SWAPPED DIMER OF MOUSE LEUKOCYTE- TITLE 2 ASSOCIATED IMMUNOGLOBULIN-LIKE RECEPTOR 1 (NYSGRC-006047)IG-LIKE TITLE 3 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUKOCYTE-ASSOCIATED IMMUNOGLOBULIN-LIKE RECEPTOR 1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 22-121; COMPND 5 SYNONYM: LAIR-1, MLAIR1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: LAIR1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODONPLUS RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BAS4 KEYWDS LAIR-1, IG-LIKE DOMAIN, DOMAIN SWAPPING, COLLAGEN RECEPTOR, NYSGRC, KEYWDS 2 STRUCTURAL GENOMICS, PSI-BIOLOGY, NEW YORK STRUCTURAL GENOMICS KEYWDS 3 RESEARCH CONSORTIUM, IMMUNE SYSTEM, COLLAGEN, CELL SURFACE, ATOMS- KEYWDS 4 TO-ANIMALS: THE IMMUNE FUNCTION NETWORK, IFN EXPDTA X-RAY DIFFRACTION AUTHOR P.SAMPATHKUMAR,S.C.ALMO,NEW YORK STRUCTURAL GENOMICS RESEARCH AUTHOR 2 CONSORTIUM (NYSGRC),ATOMS-TO-ANIMALS: THE IMMUNE FUNCTION NETWORK AUTHOR 3 (IFN) REVDAT 2 13-SEP-23 4ESK 1 REMARK SEQADV LINK REVDAT 1 02-MAY-12 4ESK 0 JRNL AUTH P.SAMPATHKUMAR,J.BONANNO,A.FISER,Y.PATSKOVSKY,W.ZENCHECK, JRNL AUTH 2 S.G.NATHENSON,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF A STRAND-SWAPPED DIMER OF MOUSE JRNL TITL 2 LEUKOCYTE-ASSOCIATED IMMUNOGLOBULIN-LIKE RECEPTOR 1 IG-LIKE JRNL TITL 3 DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 40637 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2050 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2568 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 125 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3050 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 229 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.28000 REMARK 3 B22 (A**2) : -0.42000 REMARK 3 B33 (A**2) : 0.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.124 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.225 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3307 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2242 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4524 ; 1.354 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5565 ; 0.807 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 446 ; 6.352 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;36.616 ;25.259 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 614 ;11.851 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;15.286 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 525 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3637 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 631 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4ESK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000072016. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0750 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40723 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 38.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 14.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04300 REMARK 200 FOR THE DATA SET : 59.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.8 REMARK 200 DATA REDUNDANCY IN SHELL : 13.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.36300 REMARK 200 FOR SHELL : 6.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4ETY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (8.5MG/ML IN 20 MM TRIZMA BASE REMARK 280 PH 8.2, 100 MM NACL; RESERVOIR (1.0 M K/NA TARTRATE MES PH 6.0 - REMARK 280 WIZARD I & II #98); CRYOPROTECTION (30% GLYCEROL IN RESERVIOR REMARK 280 SOLUTION), SITTING DROP VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.07050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.30450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.56050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.30450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.07050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.56050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6, 7 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 7 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 20 REMARK 465 MET A 21 REMARK 465 GLN A 22 REMARK 465 GLU A 23 REMARK 465 GLY A 24 REMARK 465 GLU A 121 REMARK 465 SER B 20 REMARK 465 MET B 21 REMARK 465 GLN B 22 REMARK 465 GLU B 23 REMARK 465 GLY B 24 REMARK 465 GLU B 121 REMARK 465 SER C 20 REMARK 465 MET C 21 REMARK 465 GLN C 22 REMARK 465 GLU C 23 REMARK 465 SER D 20 REMARK 465 MET D 21 REMARK 465 GLN D 22 REMARK 465 GLU D 23 REMARK 465 GLY D 24 REMARK 465 GLU D 121 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 LYS B 103 CG CD CE NZ REMARK 470 LYS B 120 CG CD CE NZ REMARK 470 ASP C 53 CG OD1 OD2 REMARK 470 GLU C 91 CG CD OE1 OE2 REMARK 470 LYS C 120 CG CD CE NZ REMARK 470 LYS D 120 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 53 -44.69 84.47 REMARK 500 ASP C 53 -81.48 -65.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 203 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 232 O REMARK 620 2 HOH A 258 O 74.8 REMARK 620 3 SER B 35 OG 152.5 79.6 REMARK 620 4 SER B 36 OG 99.4 84.0 87.6 REMARK 620 5 HOH B 357 O 96.0 138.0 96.3 137.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 202 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 51 OH REMARK 620 2 GLU B 76 O 101.4 REMARK 620 3 LYS B 79 O 75.3 70.8 REMARK 620 4 GLU B 81 O 149.2 95.9 86.8 REMARK 620 5 ASP B 82 OD1 108.8 136.5 146.7 73.4 REMARK 620 6 ASP B 82 OD2 136.2 89.8 147.0 68.4 46.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D 202 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS D 79 O REMARK 620 2 ASP D 82 OD1 126.7 REMARK 620 3 HOH D 348 O 63.4 168.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA D 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-006047 RELATED DB: TARGETTRACK DBREF 4ESK A 22 121 UNP Q8BG84 LAIR1_MOUSE 22 121 DBREF 4ESK B 22 121 UNP Q8BG84 LAIR1_MOUSE 22 121 DBREF 4ESK C 22 121 UNP Q8BG84 LAIR1_MOUSE 22 121 DBREF 4ESK D 22 121 UNP Q8BG84 LAIR1_MOUSE 22 121 SEQADV 4ESK SER A 20 UNP Q8BG84 EXPRESSION TAG SEQADV 4ESK MET A 21 UNP Q8BG84 EXPRESSION TAG SEQADV 4ESK SER B 20 UNP Q8BG84 EXPRESSION TAG SEQADV 4ESK MET B 21 UNP Q8BG84 EXPRESSION TAG SEQADV 4ESK SER C 20 UNP Q8BG84 EXPRESSION TAG SEQADV 4ESK MET C 21 UNP Q8BG84 EXPRESSION TAG SEQADV 4ESK SER D 20 UNP Q8BG84 EXPRESSION TAG SEQADV 4ESK MET D 21 UNP Q8BG84 EXPRESSION TAG SEQRES 1 A 102 SER MET GLN GLU GLY SER LEU PRO ASP ILE THR ILE PHE SEQRES 2 A 102 PRO ASN SER SER LEU MET ILE SER GLN GLY THR PHE VAL SEQRES 3 A 102 THR VAL VAL CYS SER TYR SER ASP LYS HIS ASP LEU TYR SEQRES 4 A 102 ASN MET VAL ARG LEU GLU LYS ASP GLY SER THR PHE MET SEQRES 5 A 102 GLU LYS SER THR GLU PRO TYR LYS THR GLU ASP GLU PHE SEQRES 6 A 102 GLU ILE GLY PRO VAL ASN GLU THR ILE THR GLY HIS TYR SEQRES 7 A 102 SER CYS ILE TYR SER LYS GLY ILE THR TRP SER GLU ARG SEQRES 8 A 102 SER LYS THR LEU GLU LEU LYS VAL ILE LYS GLU SEQRES 1 B 102 SER MET GLN GLU GLY SER LEU PRO ASP ILE THR ILE PHE SEQRES 2 B 102 PRO ASN SER SER LEU MET ILE SER GLN GLY THR PHE VAL SEQRES 3 B 102 THR VAL VAL CYS SER TYR SER ASP LYS HIS ASP LEU TYR SEQRES 4 B 102 ASN MET VAL ARG LEU GLU LYS ASP GLY SER THR PHE MET SEQRES 5 B 102 GLU LYS SER THR GLU PRO TYR LYS THR GLU ASP GLU PHE SEQRES 6 B 102 GLU ILE GLY PRO VAL ASN GLU THR ILE THR GLY HIS TYR SEQRES 7 B 102 SER CYS ILE TYR SER LYS GLY ILE THR TRP SER GLU ARG SEQRES 8 B 102 SER LYS THR LEU GLU LEU LYS VAL ILE LYS GLU SEQRES 1 C 102 SER MET GLN GLU GLY SER LEU PRO ASP ILE THR ILE PHE SEQRES 2 C 102 PRO ASN SER SER LEU MET ILE SER GLN GLY THR PHE VAL SEQRES 3 C 102 THR VAL VAL CYS SER TYR SER ASP LYS HIS ASP LEU TYR SEQRES 4 C 102 ASN MET VAL ARG LEU GLU LYS ASP GLY SER THR PHE MET SEQRES 5 C 102 GLU LYS SER THR GLU PRO TYR LYS THR GLU ASP GLU PHE SEQRES 6 C 102 GLU ILE GLY PRO VAL ASN GLU THR ILE THR GLY HIS TYR SEQRES 7 C 102 SER CYS ILE TYR SER LYS GLY ILE THR TRP SER GLU ARG SEQRES 8 C 102 SER LYS THR LEU GLU LEU LYS VAL ILE LYS GLU SEQRES 1 D 102 SER MET GLN GLU GLY SER LEU PRO ASP ILE THR ILE PHE SEQRES 2 D 102 PRO ASN SER SER LEU MET ILE SER GLN GLY THR PHE VAL SEQRES 3 D 102 THR VAL VAL CYS SER TYR SER ASP LYS HIS ASP LEU TYR SEQRES 4 D 102 ASN MET VAL ARG LEU GLU LYS ASP GLY SER THR PHE MET SEQRES 5 D 102 GLU LYS SER THR GLU PRO TYR LYS THR GLU ASP GLU PHE SEQRES 6 D 102 GLU ILE GLY PRO VAL ASN GLU THR ILE THR GLY HIS TYR SEQRES 7 D 102 SER CYS ILE TYR SER LYS GLY ILE THR TRP SER GLU ARG SEQRES 8 D 102 SER LYS THR LEU GLU LEU LYS VAL ILE LYS GLU HET GOL B 201 6 HET K B 202 1 HET NA B 203 1 HET GOL C 201 6 HET GOL D 201 6 HET NA D 202 1 HETNAM GOL GLYCEROL HETNAM K POTASSIUM ION HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 3(C3 H8 O3) FORMUL 6 K K 1+ FORMUL 7 NA 2(NA 1+) FORMUL 11 HOH *229(H2 O) HELIX 1 1 LYS A 54 TYR A 58 5 5 HELIX 2 2 ASN A 90 THR A 94 5 5 HELIX 3 3 ASN B 90 THR B 94 5 5 HELIX 4 4 LYS C 54 TYR C 58 5 5 HELIX 5 5 ASN C 90 THR C 94 5 5 HELIX 6 6 ASP D 53 LEU D 57 5 5 HELIX 7 7 ASN D 90 THR D 94 5 5 SHEET 1 A 3 ASP A 28 PHE A 32 0 SHEET 2 A 3 VAL C 45 SER C 50 -1 O VAL C 48 N THR A 30 SHEET 3 A 3 GLU C 81 ILE C 86 -1 O ILE C 86 N VAL C 45 SHEET 1 B 5 SER A 36 SER A 40 0 SHEET 2 B 5 LEU A 114 ILE A 119 1 O GLU A 115 N LEU A 37 SHEET 3 B 5 GLY A 95 LYS A 103 -1 N TYR A 97 O LEU A 114 SHEET 4 B 5 MET A 60 LYS A 65 -1 N GLU A 64 O SER A 98 SHEET 5 B 5 SER A 68 SER A 74 -1 O MET A 71 N LEU A 63 SHEET 1 C 4 SER A 36 SER A 40 0 SHEET 2 C 4 LEU A 114 ILE A 119 1 O GLU A 115 N LEU A 37 SHEET 3 C 4 GLY A 95 LYS A 103 -1 N TYR A 97 O LEU A 114 SHEET 4 C 4 TRP A 107 ARG A 110 -1 O GLU A 109 N TYR A 101 SHEET 1 D 3 GLU A 81 ILE A 86 0 SHEET 2 D 3 VAL A 45 SER A 50 -1 N VAL A 45 O ILE A 86 SHEET 3 D 3 ASP C 28 PHE C 32 -1 O THR C 30 N VAL A 48 SHEET 1 E 3 ASP B 28 PHE B 32 0 SHEET 2 E 3 VAL D 45 SER D 50 -1 O VAL D 48 N THR B 30 SHEET 3 E 3 GLU D 81 ILE D 86 -1 O PHE D 84 N VAL D 47 SHEET 1 F 5 SER B 36 SER B 40 0 SHEET 2 F 5 LEU B 114 ILE B 119 1 O GLU B 115 N LEU B 37 SHEET 3 F 5 GLY B 95 LYS B 103 -1 N TYR B 97 O LEU B 114 SHEET 4 F 5 MET B 60 LYS B 65 -1 N GLU B 64 O SER B 98 SHEET 5 F 5 SER B 68 SER B 74 -1 O SER B 68 N LYS B 65 SHEET 1 G 4 SER B 36 SER B 40 0 SHEET 2 G 4 LEU B 114 ILE B 119 1 O GLU B 115 N LEU B 37 SHEET 3 G 4 GLY B 95 LYS B 103 -1 N TYR B 97 O LEU B 114 SHEET 4 G 4 THR B 106 ARG B 110 -1 O SER B 108 N TYR B 101 SHEET 1 H 3 GLU B 81 ILE B 86 0 SHEET 2 H 3 VAL B 45 SER B 50 -1 N CYS B 49 O ASP B 82 SHEET 3 H 3 ASP D 28 PHE D 32 -1 O THR D 30 N VAL B 48 SHEET 1 I 5 SER C 36 ILE C 39 0 SHEET 2 I 5 LEU C 114 VAL C 118 1 O GLU C 115 N LEU C 37 SHEET 3 I 5 GLY C 95 LYS C 103 -1 N TYR C 97 O LEU C 114 SHEET 4 I 5 MET C 60 LYS C 65 -1 N GLU C 64 O SER C 98 SHEET 5 I 5 SER C 68 SER C 74 -1 O PHE C 70 N LEU C 63 SHEET 1 J 4 SER C 36 ILE C 39 0 SHEET 2 J 4 LEU C 114 VAL C 118 1 O GLU C 115 N LEU C 37 SHEET 3 J 4 GLY C 95 LYS C 103 -1 N TYR C 97 O LEU C 114 SHEET 4 J 4 THR C 106 TRP C 107 -1 O THR C 106 N LYS C 103 SHEET 1 K 5 SER D 36 SER D 40 0 SHEET 2 K 5 LEU D 114 ILE D 119 1 O GLU D 115 N LEU D 37 SHEET 3 K 5 GLY D 95 LYS D 103 -1 N TYR D 97 O LEU D 114 SHEET 4 K 5 MET D 60 LYS D 65 -1 N GLU D 64 O SER D 98 SHEET 5 K 5 SER D 68 SER D 74 -1 O MET D 71 N LEU D 63 SHEET 1 L 4 SER D 36 SER D 40 0 SHEET 2 L 4 LEU D 114 ILE D 119 1 O GLU D 115 N LEU D 37 SHEET 3 L 4 GLY D 95 LYS D 103 -1 N TYR D 97 O LEU D 114 SHEET 4 L 4 THR D 106 TRP D 107 -1 O THR D 106 N LYS D 103 SSBOND 1 CYS A 49 CYS A 99 1555 1555 2.01 SSBOND 2 CYS B 49 CYS B 99 1555 1555 2.03 SSBOND 3 CYS C 49 CYS C 99 1555 1555 2.03 SSBOND 4 CYS D 49 CYS D 99 1555 1555 2.01 LINK O HOH A 232 NA NA B 203 1555 1555 2.61 LINK O HOH A 258 NA NA B 203 1555 1555 2.63 LINK OG ASER B 35 NA NA B 203 1555 1555 3.17 LINK OG SER B 36 NA NA B 203 1555 1555 2.80 LINK OH TYR B 51 K K B 202 1555 1555 3.31 LINK O GLU B 76 K K B 202 1555 1555 2.86 LINK O LYS B 79 K K B 202 1555 1555 2.52 LINK O GLU B 81 K K B 202 1555 1555 2.96 LINK OD1 ASP B 82 K K B 202 1555 1555 2.60 LINK OD2 ASP B 82 K K B 202 1555 1555 2.87 LINK NA NA B 203 O HOH B 357 1555 1555 2.45 LINK O LYS D 79 NA NA D 202 1555 1555 2.76 LINK OD1 ASP D 82 NA NA D 202 1555 1555 2.60 LINK NA NA D 202 O HOH D 348 1555 1555 2.40 CISPEP 1 PHE A 32 PRO A 33 0 -2.71 CISPEP 2 GLY A 87 PRO A 88 0 -3.72 CISPEP 3 PHE B 32 PRO B 33 0 0.63 CISPEP 4 GLY B 87 PRO B 88 0 3.13 CISPEP 5 PHE C 32 PRO C 33 0 -4.08 CISPEP 6 GLY C 87 PRO C 88 0 -6.18 CISPEP 7 PHE D 32 PRO D 33 0 -4.18 CISPEP 8 GLY D 87 PRO D 88 0 0.23 SITE 1 AC1 7 MET B 71 LYS B 73 PHE B 84 GLU B 85 SITE 2 AC1 7 HOH B 351 GLN C 41 GLU C 121 SITE 1 AC2 5 TYR B 51 GLU B 76 LYS B 79 GLU B 81 SITE 2 AC2 5 ASP B 82 SITE 1 AC3 5 HOH A 232 HOH A 258 SER B 35 SER B 36 SITE 2 AC3 5 HOH B 357 SITE 1 AC4 5 GLU C 85 ILE C 86 GLY C 87 HOH C 323 SITE 2 AC4 5 ILE D 105 SITE 1 AC5 6 PHE A 70 ILE D 86 GLY D 87 ILE D 93 SITE 2 AC5 6 HOH D 323 HOH D 349 SITE 1 AC6 5 TYR D 51 THR D 75 LYS D 79 ASP D 82 SITE 2 AC6 5 HOH D 348 CRYST1 62.141 73.121 90.609 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016092 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013676 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011036 0.00000