HEADER RNA BINDING PROTEIN 26-APR-12 4EWC TITLE CRYSTAL STRUCTURE OF THE INFECTIOUS SALMON ANEMIA VIRUS NUCLEOPROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE NUCLEOPROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFECTIOUS SALMON ANEMIA VIRUS; SOURCE 3 ORGANISM_TAXID: 55987; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA-HELICAL, RNA ENCAPSIDATION, ISAVIRUS, ORTHOMYOXOVIRUS, KEYWDS 2 NUCLEOPROTEIN, NP, RNA BINDING, REPLICATION, TRANSCRIPTION, VIRAL KEYWDS 3 RNA PACKAGING, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.ZHENG,Y.J.TAO REVDAT 3 16-OCT-24 4EWC 1 SEQADV LINK REVDAT 2 25-FEB-15 4EWC 1 JRNL REVDAT 1 08-MAY-13 4EWC 0 JRNL AUTH W.ZHENG,J.OLSON,V.VAKHARIA,Y.J.TAO JRNL TITL THE CRYSTAL STRUCTURE AND RNA-BINDING OF AN ORTHOMYXOVIRUS JRNL TITL 2 NUCLEOPROTEIN. JRNL REF PLOS PATHOG. V. 9 03624 2013 JRNL REFN ISSN 1553-7366 JRNL PMID 24068932 JRNL DOI 10.1371/JOURNAL.PPAT.1003624 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 18757 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.268 REMARK 3 R VALUE (WORKING SET) : 0.268 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 968 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.9851 - 5.1632 0.99 2712 138 0.2597 0.2496 REMARK 3 2 5.1632 - 4.0989 0.98 2571 131 0.2168 0.2576 REMARK 3 3 4.0989 - 3.5810 0.98 2490 149 0.2438 0.2149 REMARK 3 4 3.5810 - 3.2537 0.99 2501 150 0.2827 0.3318 REMARK 3 5 3.2537 - 3.0205 1.00 2515 134 0.3249 0.2875 REMARK 3 6 3.0205 - 2.8425 0.99 2491 135 0.3492 0.3594 REMARK 3 7 2.8425 - 2.7000 1.00 2509 131 0.3721 0.3349 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.11 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 41.26 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -12.61190 REMARK 3 B22 (A**2) : -12.61190 REMARK 3 B33 (A**2) : 30.71270 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3612 REMARK 3 ANGLE : 1.133 4871 REMARK 3 CHIRALITY : 0.075 586 REMARK 3 PLANARITY : 0.004 620 REMARK 3 DIHEDRAL : 12.612 1270 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4EWC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000072150. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97895 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK SI(111) SAGITALLY REMARK 200 FOCUSED MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18972 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.45800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG6000, 0.8M LITHIUM CHLORIDE, REMARK 280 0.1M SODIUM CITRATE, PH 4.0, VAPOR DIFFUSION, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.65500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 56.49150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 56.49150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.82750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 56.49150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 56.49150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 77.48250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 56.49150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.49150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 25.82750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 56.49150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.49150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 77.48250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 51.65500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 112.98300 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 112.98300 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 51.65500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -6 REMARK 465 GLY A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 LYS A 4 REMARK 465 LYS A 26 REMARK 465 THR A 39 REMARK 465 SER A 40 REMARK 465 PHE A 46 REMARK 465 ALA A 47 REMARK 465 GLY A 48 REMARK 465 THR A 49 REMARK 465 GLU A 50 REMARK 465 ASP A 51 REMARK 465 GLU A 52 REMARK 465 PHE A 53 REMARK 465 TRP A 54 REMARK 465 VAL A 55 REMARK 465 GLU A 56 REMARK 465 LEU A 57 REMARK 465 ASP A 58 REMARK 465 GLN A 59 REMARK 465 ASP A 60 REMARK 465 MSE A 76 REMARK 465 LYS A 77 REMARK 465 ASP A 78 REMARK 465 MSE A 79 REMARK 465 SER A 80 REMARK 465 THR A 81 REMARK 465 ARG A 82 REMARK 465 VAL A 83 REMARK 465 SER A 84 REMARK 465 GLY A 85 REMARK 465 VAL A 113 REMARK 465 ASP A 114 REMARK 465 ASP A 115 REMARK 465 GLU A 116 REMARK 465 GLU A 117 REMARK 465 ALA A 118 REMARK 465 GLY A 119 REMARK 465 GLY A 120 REMARK 465 SER A 121 REMARK 465 GLY A 122 REMARK 465 LEU A 123 REMARK 465 VAL A 124 REMARK 465 ASP A 125 REMARK 465 ASN A 126 REMARK 465 LYS A 127 REMARK 465 ARG A 128 REMARK 465 LYS A 129 REMARK 465 ASN A 130 REMARK 465 LYS A 131 REMARK 465 GLY A 132 REMARK 465 ASP A 183 REMARK 465 GLY A 184 REMARK 465 LYS A 185 REMARK 465 ARG A 186 REMARK 465 GLN A 187 REMARK 465 THR A 188 REMARK 465 ARG A 189 REMARK 465 THR A 190 REMARK 465 GLY A 191 REMARK 465 GLY A 192 REMARK 465 GLN A 193 REMARK 465 ARG A 194 REMARK 465 VAL A 195 REMARK 465 ASP A 196 REMARK 465 MSE A 197 REMARK 465 ALA A 198 REMARK 465 ASP A 199 REMARK 465 VAL A 200 REMARK 465 PRO A 321 REMARK 465 GLU A 322 REMARK 465 GLY A 323 REMARK 465 ALA A 324 REMARK 465 THR A 498 REMARK 465 SER A 499 REMARK 465 GLN A 500 REMARK 465 SER A 501 REMARK 465 ASN A 502 REMARK 465 THR A 503 REMARK 465 GLY A 531 REMARK 465 ASP A 532 REMARK 465 GLY A 533 REMARK 465 THR A 534 REMARK 465 SER A 535 REMARK 465 GLU A 536 REMARK 465 THR A 537 REMARK 465 THR A 538 REMARK 465 SER A 539 REMARK 465 VAL A 540 REMARK 465 ASN A 541 REMARK 465 GLU A 587 REMARK 465 GLY A 588 REMARK 465 VAL A 589 REMARK 465 GLU A 590 REMARK 465 GLU A 591 REMARK 465 ALA A 592 REMARK 465 GLU A 593 REMARK 465 ARG A 594 REMARK 465 ILE A 595 REMARK 465 THR A 596 REMARK 465 ASP A 597 REMARK 465 MSE A 598 REMARK 465 THR A 599 REMARK 465 PRO A 600 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MSE A 6 CG SE CE REMARK 470 VAL A 12 CG1 CG2 REMARK 470 ARG A 13 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 14 CG OD1 OD2 REMARK 470 ASN A 15 CG OD1 ND2 REMARK 470 THR A 16 OG1 CG2 REMARK 470 LEU A 17 CG CD1 CD2 REMARK 470 VAL A 18 CG1 CG2 REMARK 470 VAL A 19 CG1 CG2 REMARK 470 ARG A 34 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 ASP A 36 CG OD1 OD2 REMARK 470 ARG A 37 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 41 CG CD1 CD2 REMARK 470 LEU A 42 CG CD1 CD2 REMARK 470 GLN A 43 CG CD OE1 NE2 REMARK 470 LYS A 44 CG CD CE NZ REMARK 470 ASP A 64 CG OD1 OD2 REMARK 470 LYS A 65 CG CD CE NZ REMARK 470 LYS A 66 CG CD CE NZ REMARK 470 ILE A 67 CG1 CG2 CD1 REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 PHE A 70 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 71 CG CD1 CD2 REMARK 470 GLU A 72 CG CD OE1 OE2 REMARK 470 GLU A 73 OE1 OE2 REMARK 470 GLU A 74 OE1 OE2 REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 GLU A 92 CG CD OE1 OE2 REMARK 470 ARG A 93 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 96 CG CD OE1 OE2 REMARK 470 GLU A 109 CG CD OE1 OE2 REMARK 470 GLU A 182 CG CD OE1 OE2 REMARK 470 LYS A 202 CG CD CE NZ REMARK 470 LEU A 203 CG CD1 CD2 REMARK 470 ASN A 209 CG OD1 ND2 REMARK 470 LYS A 211 CG CD CE NZ REMARK 470 LYS A 213 CG CD CE NZ REMARK 470 LYS A 238 CG CD CE NZ REMARK 470 GLN A 240 CG CD OE1 NE2 REMARK 470 LYS A 296 CG CD CE NZ REMARK 470 ARG A 299 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 325 CG CD CE NZ REMARK 470 SER A 326 OG REMARK 470 LYS A 327 CG CD CE NZ REMARK 470 GLU A 358 CG CD OE1 OE2 REMARK 470 ASN A 359 CG OD1 ND2 REMARK 470 LYS A 360 CG CD CE NZ REMARK 470 GLN A 362 CG CD OE1 NE2 REMARK 470 ARG A 363 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 395 CG CD OE1 NE2 REMARK 470 GLU A 396 CG CD OE1 OE2 REMARK 470 LYS A 475 CG CD CE NZ REMARK 470 LYS A 476 CG CD CE NZ REMARK 470 ASP A 477 CG OD1 OD2 REMARK 470 ARG A 486 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 497 CG CD OE1 OE2 REMARK 470 ARG A 505 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 542 CG1 CG2 REMARK 470 ARG A 543 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 547 CG CD CE NZ REMARK 470 GLU A 555 CG CD OE1 OE2 REMARK 470 ARG A 559 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 569 CG CD OE1 NE2 REMARK 470 ASP A 585 CG OD1 OD2 REMARK 470 PHE A 586 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MSE A 6 -50.25 -144.94 REMARK 500 ARG A 13 -70.92 -57.65 REMARK 500 ASP A 14 -110.87 -94.42 REMARK 500 ASP A 64 162.71 71.23 REMARK 500 GLU A 73 -72.77 -54.28 REMARK 500 ALA A 208 -93.13 -108.00 REMARK 500 ASN A 319 -70.29 -93.83 REMARK 500 SER A 326 -53.51 66.60 REMARK 500 SER A 355 52.81 -107.72 REMARK 500 LYS A 360 -8.65 69.53 REMARK 500 LYS A 381 165.67 177.40 REMARK 500 ASN A 408 -168.49 -171.15 REMARK 500 LYS A 420 71.27 -117.99 REMARK 500 LYS A 476 -28.99 81.30 REMARK 500 LEU A 485 78.12 -105.41 REMARK 500 ASN A 489 -1.81 63.38 REMARK 500 ARG A 505 30.55 -83.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE CORRESPONDS TO THE GENEBANK ENTRY JX070881 DBREF 4EWC A 2 600 UNP Q91BR3 Q91BR3_9ORTO 2 600 SEQADV 4EWC MSE A -6 UNP Q91BR3 EXPRESSION TAG SEQADV 4EWC GLY A -5 UNP Q91BR3 EXPRESSION TAG SEQADV 4EWC HIS A -4 UNP Q91BR3 EXPRESSION TAG SEQADV 4EWC HIS A -3 UNP Q91BR3 EXPRESSION TAG SEQADV 4EWC HIS A -2 UNP Q91BR3 EXPRESSION TAG SEQADV 4EWC HIS A -1 UNP Q91BR3 EXPRESSION TAG SEQADV 4EWC HIS A 0 UNP Q91BR3 EXPRESSION TAG SEQADV 4EWC HIS A 1 UNP Q91BR3 EXPRESSION TAG SEQADV 4EWC LYS A 127 UNP Q91BR3 ARG 127 SEE REMARK 999 SEQADV 4EWC MSE A 174 UNP Q91BR3 ILE 174 SEE REMARK 999 SEQRES 1 A 607 MSE GLY HIS HIS HIS HIS HIS HIS ALA ASP LYS GLY MSE SEQRES 2 A 607 THR TYR SER PHE ASP VAL ARG ASP ASN THR LEU VAL VAL SEQRES 3 A 607 ARG ARG SER THR ALA THR LYS SER GLY ILE LYS ILE SER SEQRES 4 A 607 TYR ARG GLU ASP ARG GLY THR SER LEU LEU GLN LYS ALA SEQRES 5 A 607 PHE ALA GLY THR GLU ASP GLU PHE TRP VAL GLU LEU ASP SEQRES 6 A 607 GLN ASP VAL TYR VAL ASP LYS LYS ILE ARG LYS PHE LEU SEQRES 7 A 607 GLU GLU GLU LYS MSE LYS ASP MSE SER THR ARG VAL SER SEQRES 8 A 607 GLY ALA VAL ALA ALA ALA ILE GLU ARG SER VAL GLU PHE SEQRES 9 A 607 ASP ASN PHE SER LYS GLU ALA ALA ALA ASN ILE GLU MSE SEQRES 10 A 607 ALA GLY VAL ASP ASP GLU GLU ALA GLY GLY SER GLY LEU SEQRES 11 A 607 VAL ASP ASN LYS ARG LYS ASN LYS GLY VAL SER ASN MSE SEQRES 12 A 607 ALA TYR ASN LEU SER LEU PHE ILE GLY MSE VAL PHE PRO SEQRES 13 A 607 ALA LEU THR THR PHE PHE SER ALA ILE LEU SER GLU GLY SEQRES 14 A 607 GLU MSE SER ILE TRP GLN ASN GLY GLN ALA ILE MSE ARG SEQRES 15 A 607 ILE LEU ALA LEU ALA ASP GLU ASP GLY LYS ARG GLN THR SEQRES 16 A 607 ARG THR GLY GLY GLN ARG VAL ASP MSE ALA ASP VAL THR SEQRES 17 A 607 LYS LEU ASN VAL VAL THR ALA ASN GLY LYS VAL LYS GLN SEQRES 18 A 607 VAL GLU VAL ASN LEU ASN ASP LEU LYS ALA ALA PHE ARG SEQRES 19 A 607 GLN SER ARG PRO LYS ARG SER ASP TYR ARG LYS GLY GLN SEQRES 20 A 607 GLY SER LYS ALA THR GLU SER SER ILE SER ASN GLN CYS SEQRES 21 A 607 MSE ALA LEU ILE MSE LYS SER VAL LEU SER ALA ASP GLN SEQRES 22 A 607 LEU PHE ALA PRO GLY VAL LYS MSE MSE ARG THR ASN GLY SEQRES 23 A 607 PHE ASN ALA SER TYR THR THR LEU ALA GLU GLY ALA ASN SEQRES 24 A 607 ILE PRO SER LYS TYR LEU ARG HIS MSE ARG ASN CYS GLY SEQRES 25 A 607 GLY VAL ALA LEU ASP LEU MSE GLY MSE LYS ARG ILE LYS SEQRES 26 A 607 ASN SER PRO GLU GLY ALA LYS SER LYS ILE PHE SER ILE SEQRES 27 A 607 ILE GLN LYS LYS VAL ARG GLY ARG CYS ARG THR GLU GLU SEQRES 28 A 607 GLN ARG LEU LEU THR SER ALA LEU LYS ILE SER ASP GLY SEQRES 29 A 607 GLU ASN LYS PHE GLN ARG ILE MSE ASP THR LEU CYS THR SEQRES 30 A 607 SER PHE LEU ILE ASP PRO PRO ARG THR THR LYS CYS PHE SEQRES 31 A 607 ILE PRO PRO ILE SER SER LEU MSE MSE TYR ILE GLN GLU SEQRES 32 A 607 GLY ASN SER VAL LEU ALA MSE ASP PHE MSE LYS ASN GLY SEQRES 33 A 607 GLU ASP ALA CYS LYS ILE CYS ARG GLU ALA LYS LEU LYS SEQRES 34 A 607 VAL GLY VAL ASN SER THR PHE THR MSE SER VAL ALA ARG SEQRES 35 A 607 THR CYS VAL ALA VAL SER MSE VAL ALA THR ALA PHE CYS SEQRES 36 A 607 SER ALA ASP ILE ILE GLU ASN ALA VAL PRO GLY SER GLU SEQRES 37 A 607 ARG TYR ARG SER ASN ILE LYS ALA ASN THR THR LYS PRO SEQRES 38 A 607 LYS LYS ASP SER THR TYR THR ILE GLN GLY LEU ARG LEU SEQRES 39 A 607 SER ASN VAL ARG TYR GLU ALA ARG PRO GLU THR SER GLN SEQRES 40 A 607 SER ASN THR ASP ARG SER TRP GLN VAL ASN VAL THR ASP SEQRES 41 A 607 SER PHE GLY GLY LEU ALA VAL PHE ASN GLN GLY ALA ILE SEQRES 42 A 607 ARG GLU MSE LEU GLY ASP GLY THR SER GLU THR THR SER SEQRES 43 A 607 VAL ASN VAL ARG ALA LEU VAL LYS ARG ILE LEU LYS SER SEQRES 44 A 607 ALA SER GLU ARG SER ALA ARG ALA VAL LYS THR PHE MSE SEQRES 45 A 607 VAL GLY GLU GLN GLY LYS SER ALA ILE VAL ILE SER GLY SEQRES 46 A 607 VAL GLY LEU PHE SER ILE ASP PHE GLU GLY VAL GLU GLU SEQRES 47 A 607 ALA GLU ARG ILE THR ASP MSE THR PRO MODRES 4EWC MSE A 6 MET SELENOMETHIONINE MODRES 4EWC MSE A 110 MET SELENOMETHIONINE MODRES 4EWC MSE A 136 MET SELENOMETHIONINE MODRES 4EWC MSE A 146 MET SELENOMETHIONINE MODRES 4EWC MSE A 164 MET SELENOMETHIONINE MODRES 4EWC MSE A 174 MET SELENOMETHIONINE MODRES 4EWC MSE A 254 MET SELENOMETHIONINE MODRES 4EWC MSE A 258 MET SELENOMETHIONINE MODRES 4EWC MSE A 274 MET SELENOMETHIONINE MODRES 4EWC MSE A 275 MET SELENOMETHIONINE MODRES 4EWC MSE A 301 MET SELENOMETHIONINE MODRES 4EWC MSE A 312 MET SELENOMETHIONINE MODRES 4EWC MSE A 314 MET SELENOMETHIONINE MODRES 4EWC MSE A 365 MET SELENOMETHIONINE MODRES 4EWC MSE A 391 MET SELENOMETHIONINE MODRES 4EWC MSE A 392 MET SELENOMETHIONINE MODRES 4EWC MSE A 403 MET SELENOMETHIONINE MODRES 4EWC MSE A 406 MET SELENOMETHIONINE MODRES 4EWC MSE A 431 MET SELENOMETHIONINE MODRES 4EWC MSE A 442 MET SELENOMETHIONINE MODRES 4EWC MSE A 529 MET SELENOMETHIONINE MODRES 4EWC MSE A 565 MET SELENOMETHIONINE HET MSE A 6 5 HET MSE A 110 8 HET MSE A 136 8 HET MSE A 146 8 HET MSE A 164 8 HET MSE A 174 8 HET MSE A 254 8 HET MSE A 258 8 HET MSE A 274 8 HET MSE A 275 8 HET MSE A 301 8 HET MSE A 312 8 HET MSE A 314 8 HET MSE A 365 8 HET MSE A 391 8 HET MSE A 392 8 HET MSE A 403 8 HET MSE A 406 8 HET MSE A 431 8 HET MSE A 442 8 HET MSE A 529 8 HET MSE A 565 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 22(C5 H11 N O2 SE) FORMUL 2 HOH *43(H2 O) HELIX 1 1 ASP A 64 GLU A 74 1 11 HELIX 2 2 ALA A 88 ILE A 108 1 21 HELIX 3 3 GLU A 109 GLY A 112 5 4 HELIX 4 4 SER A 134 SER A 156 1 23 HELIX 5 5 SER A 160 SER A 165 1 6 HELIX 6 6 ILE A 166 GLU A 182 1 17 HELIX 7 7 ASN A 218 ARG A 230 1 13 HELIX 8 8 THR A 245 SER A 263 1 19 HELIX 9 9 ALA A 264 ALA A 269 1 6 HELIX 10 10 GLY A 271 ASN A 278 1 8 HELIX 11 11 ASN A 281 GLU A 289 5 9 HELIX 12 12 PRO A 294 ARG A 299 1 6 HELIX 13 13 HIS A 300 GLY A 306 5 7 HELIX 14 14 VAL A 307 SER A 320 1 14 HELIX 15 15 SER A 326 CYS A 340 1 15 HELIX 16 16 THR A 342 LEU A 352 1 11 HELIX 17 17 PHE A 361 ASP A 375 1 15 HELIX 18 18 PRO A 386 GLU A 396 1 11 HELIX 19 19 GLY A 409 ALA A 419 1 11 HELIX 20 20 THR A 430 VAL A 443 1 14 HELIX 21 21 SER A 449 VAL A 457 1 9 HELIX 22 22 TYR A 463 ILE A 467 5 5 HELIX 23 23 ASN A 522 LEU A 530 1 9 HELIX 24 24 ARG A 543 ALA A 558 1 16 SHEET 1 A 3 THR A 7 ASP A 11 0 SHEET 2 A 3 VAL A 18 ALA A 24 -1 O SER A 22 N THR A 7 SHEET 3 A 3 ILE A 29 ARG A 34 -1 O SER A 32 N ARG A 21 SHEET 1 B 2 LYS A 202 THR A 207 0 SHEET 2 B 2 VAL A 212 VAL A 217 -1 O LYS A 213 N VAL A 206 SHEET 1 C 2 LYS A 422 VAL A 425 0 SHEET 2 C 2 THR A 481 GLY A 484 -1 O THR A 481 N VAL A 425 SHEET 1 D 3 TYR A 492 GLU A 493 0 SHEET 2 D 3 VAL A 561 GLY A 567 -1 O VAL A 566 N TYR A 492 SHEET 3 D 3 GLY A 570 ILE A 576 -1 O ILE A 574 N THR A 563 SHEET 1 E 2 ASN A 510 THR A 512 0 SHEET 2 E 2 ALA A 519 PHE A 521 -1 O VAL A 520 N VAL A 511 LINK C GLY A 5 N MSE A 6 1555 1555 1.33 LINK C MSE A 6 N THR A 7 1555 1555 1.33 LINK C GLU A 109 N MSE A 110 1555 1555 1.33 LINK C MSE A 110 N ALA A 111 1555 1555 1.33 LINK C ASN A 135 N MSE A 136 1555 1555 1.33 LINK C MSE A 136 N ALA A 137 1555 1555 1.33 LINK C GLY A 145 N MSE A 146 1555 1555 1.34 LINK C MSE A 146 N VAL A 147 1555 1555 1.33 LINK C GLU A 163 N MSE A 164 1555 1555 1.33 LINK C MSE A 164 N SER A 165 1555 1555 1.33 LINK C ILE A 173 N MSE A 174 1555 1555 1.33 LINK C MSE A 174 N ARG A 175 1555 1555 1.33 LINK C CYS A 253 N MSE A 254 1555 1555 1.33 LINK C MSE A 254 N ALA A 255 1555 1555 1.32 LINK C ILE A 257 N MSE A 258 1555 1555 1.33 LINK C MSE A 258 N LYS A 259 1555 1555 1.34 LINK C LYS A 273 N MSE A 274 1555 1555 1.33 LINK C MSE A 274 N MSE A 275 1555 1555 1.33 LINK C MSE A 275 N ARG A 276 1555 1555 1.34 LINK C HIS A 300 N MSE A 301 1555 1555 1.33 LINK C MSE A 301 N ARG A 302 1555 1555 1.33 LINK C LEU A 311 N MSE A 312 1555 1555 1.33 LINK C MSE A 312 N GLY A 313 1555 1555 1.33 LINK C GLY A 313 N MSE A 314 1555 1555 1.33 LINK C MSE A 314 N LYS A 315 1555 1555 1.33 LINK C ILE A 364 N MSE A 365 1555 1555 1.33 LINK C MSE A 365 N ASP A 366 1555 1555 1.32 LINK C LEU A 390 N MSE A 391 1555 1555 1.33 LINK C MSE A 391 N MSE A 392 1555 1555 1.33 LINK C MSE A 392 N TYR A 393 1555 1555 1.33 LINK C ALA A 402 N MSE A 403 1555 1555 1.33 LINK C MSE A 403 N ASP A 404 1555 1555 1.33 LINK C PHE A 405 N MSE A 406 1555 1555 1.34 LINK C MSE A 406 N LYS A 407 1555 1555 1.33 LINK C THR A 430 N MSE A 431 1555 1555 1.33 LINK C MSE A 431 N SER A 432 1555 1555 1.33 LINK C SER A 441 N MSE A 442 1555 1555 1.33 LINK C MSE A 442 N VAL A 443 1555 1555 1.33 LINK C GLU A 528 N MSE A 529 1555 1555 1.33 LINK C MSE A 529 N LEU A 530 1555 1555 1.33 LINK C PHE A 564 N MSE A 565 1555 1555 1.33 LINK C MSE A 565 N VAL A 566 1555 1555 1.33 CISPEP 1 ASP A 585 PHE A 586 0 2.27 CRYST1 112.983 112.983 103.310 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008851 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008851 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009680 0.00000