HEADER TRANSFERASE/TRANSFERASE INHIBITOR 27-APR-12 4EWH TITLE CO-CRYSTAL STRUCTURE OF ACK1 WITH INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTIVATED CDC42 KINASE 1; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: ACK-1, TYROSINE KINASE NON-RECEPTOR PROTEIN 2; COMPND 5 EC: 2.7.10.2, 2.7.11.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TNK2, ACK1 KEYWDS DRUG DESIGN, ENZYME INHIBITORS, TRANSFERASE-TRANSFERASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.LIU,N.WALKER,Z.WANG REVDAT 2 31-OCT-12 4EWH 1 JRNL REVDAT 1 19-SEP-12 4EWH 0 JRNL AUTH X.JIAO,D.J.KOPECKY,J.LIU,J.LIU,J.C.JAEN,M.G.CARDOZO, JRNL AUTH 2 R.SHARMA,N.WALKER,H.WESCHE,S.LI,E.FARRELLY,S.H.XIAO,Z.WANG, JRNL AUTH 3 F.KAYSER JRNL TITL SYNTHESIS AND OPTIMIZATION OF SUBSTITUTED JRNL TITL 2 FURO[2,3-D]-PYRIMIDIN-4-AMINES AND JRNL TITL 3 7H-PYRROLO[2,3-D]PYRIMIDIN-4-AMINES AS ACK1 INHIBITORS. JRNL REF BIOORG.MED.CHEM.LETT. V. 22 6212 2012 JRNL REFN ISSN 0960-894X JRNL PMID 22929232 JRNL DOI 10.1016/J.BMCL.2012.08.020 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 100.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 21084 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.259 REMARK 3 R VALUE (WORKING SET) : 0.256 REMARK 3 FREE R VALUE : 0.313 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1082 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1458 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.3390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4411 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 23 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.76000 REMARK 3 B22 (A**2) : 3.52000 REMARK 3 B33 (A**2) : -1.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.29000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.980 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.378 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.294 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.788 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.908 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.857 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4596 ; 0.021 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6227 ; 2.137 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 547 ; 9.261 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 666 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3488 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1947 ; 0.248 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 157 ; 0.187 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 64 ; 0.367 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.342 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2738 ; 1.013 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4416 ; 1.876 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1858 ; 2.504 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1811 ; 4.169 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : B A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 117 B 390 1 REMARK 3 1 A 117 A 390 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 B (A): 2202 ; 0.100 ; 0.050 REMARK 3 TIGHT THERMAL 1 B (A**2): 2202 ; 0.270 ; 0.500 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 401 1 REMARK 3 1 B 1 B 401 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 A (A): 34 ; 0.070 ; 0.050 REMARK 3 TIGHT THERMAL 2 A (A**2): 34 ; 0.310 ; 0.500 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4EWH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-12. REMARK 100 THE RCSB ID CODE IS RCSB072155. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21086 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 100.173 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : 0.05800 REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.43700 REMARK 200 R SYM FOR SHELL (I) : 0.43700 REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 100.60100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.24000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 100.60100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.24000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 100.60100 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 21.24000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR B 391 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ILE B 332 OG SER A 337 4555 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 125 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 134 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP B 146 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 281 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 282 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 344 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 355 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 383 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 LEU A 273 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 ASP A 281 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 349 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 349 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ASP A 383 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU B 129 -131.78 -104.26 REMARK 500 ASP B 163 -137.25 -111.97 REMARK 500 VAL B 164 10.49 52.35 REMARK 500 LEU B 165 -79.98 -154.34 REMARK 500 SER B 183 -18.05 97.24 REMARK 500 GLN B 221 -84.51 -71.32 REMARK 500 HIS B 223 -47.22 -3.88 REMARK 500 ARG B 251 -2.08 72.85 REMARK 500 ASP B 252 39.40 -150.16 REMARK 500 PHE B 271 20.76 -142.78 REMARK 500 ARG B 305 29.44 47.86 REMARK 500 TRP B 331 45.40 39.54 REMARK 500 ASP B 355 6.88 87.36 REMARK 500 GLU B 387 -9.90 -54.91 REMARK 500 LEU A 129 -139.13 -114.20 REMARK 500 ASP A 163 -137.19 -111.02 REMARK 500 VAL A 164 9.19 52.71 REMARK 500 LEU A 165 -78.77 -152.96 REMARK 500 SER A 183 -18.94 97.92 REMARK 500 LEU A 217 -34.04 -35.54 REMARK 500 GLN A 221 -86.83 -65.33 REMARK 500 HIS A 223 -55.53 6.10 REMARK 500 ARG A 247 11.77 80.70 REMARK 500 ARG A 251 -0.05 69.82 REMARK 500 ASP A 252 43.11 -146.72 REMARK 500 PHE A 271 19.15 -163.96 REMARK 500 ASP A 281 169.36 174.96 REMARK 500 ASP A 355 7.01 87.65 REMARK 500 PRO A 390 -88.22 -95.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 163 VAL B 164 -149.55 REMARK 500 GLN B 389 PRO B 390 103.97 REMARK 500 GLN A 389 PRO A 390 68.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 511 DISTANCE = 5.49 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE T77 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE T77 A 401 DBREF 4EWH B 117 391 UNP Q07912 ACK1_HUMAN 117 391 DBREF 4EWH A 117 391 UNP Q07912 ACK1_HUMAN 117 391 SEQRES 1 B 275 LEU THR CYS LEU ILE GLY GLU LYS ASP LEU ARG LEU LEU SEQRES 2 B 275 GLU LYS LEU GLY ASP GLY SER PHE GLY VAL VAL ARG ARG SEQRES 3 B 275 GLY GLU TRP ASP ALA PRO SER GLY LYS THR VAL SER VAL SEQRES 4 B 275 ALA VAL LYS CYS LEU LYS PRO ASP VAL LEU SER GLN PRO SEQRES 5 B 275 GLU ALA MET ASP ASP PHE ILE ARG GLU VAL ASN ALA MET SEQRES 6 B 275 HIS SER LEU ASP HIS ARG ASN LEU ILE ARG LEU TYR GLY SEQRES 7 B 275 VAL VAL LEU THR PRO PRO MET LYS MET VAL THR GLU LEU SEQRES 8 B 275 ALA PRO LEU GLY SER LEU LEU ASP ARG LEU ARG LYS HIS SEQRES 9 B 275 GLN GLY HIS PHE LEU LEU GLY THR LEU SER ARG TYR ALA SEQRES 10 B 275 VAL GLN VAL ALA GLU GLY MET GLY TYR LEU GLU SER LYS SEQRES 11 B 275 ARG PHE ILE HIS ARG ASP LEU ALA ALA ARG ASN LEU LEU SEQRES 12 B 275 LEU ALA THR ARG ASP LEU VAL LYS ILE GLY ASP PHE GLY SEQRES 13 B 275 LEU MET ARG ALA LEU PRO GLN ASN ASP ASP HIS PTR VAL SEQRES 14 B 275 MET GLN GLU HIS ARG LYS VAL PRO PHE ALA TRP CYS ALA SEQRES 15 B 275 PRO GLU SER LEU LYS THR ARG THR PHE SER HIS ALA SER SEQRES 16 B 275 ASP THR TRP MET PHE GLY VAL THR LEU TRP GLU MET PHE SEQRES 17 B 275 THR TYR GLY GLN GLU PRO TRP ILE GLY LEU ASN GLY SER SEQRES 18 B 275 GLN ILE LEU HIS LYS ILE ASP LYS GLU GLY GLU ARG LEU SEQRES 19 B 275 PRO ARG PRO GLU ASP CYS PRO GLN ASP ILE TYR ASN VAL SEQRES 20 B 275 MET VAL GLN CYS TRP ALA HIS LYS PRO GLU ASP ARG PRO SEQRES 21 B 275 THR PHE VAL ALA LEU ARG ASP PHE LEU LEU GLU ALA GLN SEQRES 22 B 275 PRO THR SEQRES 1 A 275 LEU THR CYS LEU ILE GLY GLU LYS ASP LEU ARG LEU LEU SEQRES 2 A 275 GLU LYS LEU GLY ASP GLY SER PHE GLY VAL VAL ARG ARG SEQRES 3 A 275 GLY GLU TRP ASP ALA PRO SER GLY LYS THR VAL SER VAL SEQRES 4 A 275 ALA VAL LYS CYS LEU LYS PRO ASP VAL LEU SER GLN PRO SEQRES 5 A 275 GLU ALA MET ASP ASP PHE ILE ARG GLU VAL ASN ALA MET SEQRES 6 A 275 HIS SER LEU ASP HIS ARG ASN LEU ILE ARG LEU TYR GLY SEQRES 7 A 275 VAL VAL LEU THR PRO PRO MET LYS MET VAL THR GLU LEU SEQRES 8 A 275 ALA PRO LEU GLY SER LEU LEU ASP ARG LEU ARG LYS HIS SEQRES 9 A 275 GLN GLY HIS PHE LEU LEU GLY THR LEU SER ARG TYR ALA SEQRES 10 A 275 VAL GLN VAL ALA GLU GLY MET GLY TYR LEU GLU SER LYS SEQRES 11 A 275 ARG PHE ILE HIS ARG ASP LEU ALA ALA ARG ASN LEU LEU SEQRES 12 A 275 LEU ALA THR ARG ASP LEU VAL LYS ILE GLY ASP PHE GLY SEQRES 13 A 275 LEU MET ARG ALA LEU PRO GLN ASN ASP ASP HIS PTR VAL SEQRES 14 A 275 MET GLN GLU HIS ARG LYS VAL PRO PHE ALA TRP CYS ALA SEQRES 15 A 275 PRO GLU SER LEU LYS THR ARG THR PHE SER HIS ALA SER SEQRES 16 A 275 ASP THR TRP MET PHE GLY VAL THR LEU TRP GLU MET PHE SEQRES 17 A 275 THR TYR GLY GLN GLU PRO TRP ILE GLY LEU ASN GLY SER SEQRES 18 A 275 GLN ILE LEU HIS LYS ILE ASP LYS GLU GLY GLU ARG LEU SEQRES 19 A 275 PRO ARG PRO GLU ASP CYS PRO GLN ASP ILE TYR ASN VAL SEQRES 20 A 275 MET VAL GLN CYS TRP ALA HIS LYS PRO GLU ASP ARG PRO SEQRES 21 A 275 THR PHE VAL ALA LEU ARG ASP PHE LEU LEU GLU ALA GLN SEQRES 22 A 275 PRO THR MODRES 4EWH PTR B 284 TYR O-PHOSPHOTYROSINE MODRES 4EWH PTR A 284 TYR O-PHOSPHOTYROSINE HET PTR B 284 16 HET PTR A 284 16 HET T77 B 401 34 HET T77 A 401 34 HETNAM PTR O-PHOSPHOTYROSINE HETNAM T77 6-{4-[2-(DIMETHYLAMINO)ETHOXY]PHENYL}-N-(1,3-DITHIOLAN- HETNAM 2 T77 2-YLMETHYL)-5-PHENYL-7H-PYRROLO[2,3-D]PYRIMIDIN-4- HETNAM 3 T77 AMINE HETSYN PTR PHOSPHONOTYROSINE FORMUL 1 PTR 2(C9 H12 N O6 P) FORMUL 3 T77 2(C26 H29 N5 O S2) FORMUL 5 HOH *23(H2 O) HELIX 1 1 GLY B 122 LYS B 124 5 3 HELIX 2 2 GLN B 167 HIS B 182 1 16 HELIX 3 3 LEU B 213 HIS B 220 1 8 HELIX 4 4 LEU B 225 LYS B 246 1 22 HELIX 5 5 ALA B 254 ARG B 256 5 3 HELIX 6 6 PRO B 293 CYS B 297 5 5 HELIX 7 7 ALA B 298 ARG B 305 1 8 HELIX 8 8 SER B 308 PHE B 324 1 17 HELIX 9 9 ASN B 335 LYS B 345 1 11 HELIX 10 10 PRO B 357 TRP B 368 1 12 HELIX 11 11 LYS B 371 ARG B 375 5 5 HELIX 12 12 THR B 377 GLU B 387 1 11 HELIX 13 13 GLY A 122 LYS A 124 5 3 HELIX 14 14 GLN A 167 HIS A 182 1 16 HELIX 15 15 LEU A 213 HIS A 220 1 8 HELIX 16 16 LEU A 225 LYS A 246 1 22 HELIX 17 17 ALA A 254 ARG A 256 5 3 HELIX 18 18 PRO A 293 CYS A 297 5 5 HELIX 19 19 ALA A 298 ARG A 305 1 8 HELIX 20 20 SER A 308 THR A 325 1 18 HELIX 21 21 ASN A 335 LYS A 345 1 11 HELIX 22 22 PRO A 357 TRP A 368 1 12 HELIX 23 23 LYS A 371 ARG A 375 5 5 HELIX 24 24 THR A 377 GLU A 387 1 11 SHEET 1 A 6 CYS B 119 LEU B 120 0 SHEET 2 A 6 LEU B 192 VAL B 196 1 O TYR B 193 N CYS B 119 SHEET 3 A 6 LYS B 202 GLU B 206 -1 O VAL B 204 N GLY B 194 SHEET 4 A 6 THR B 152 CYS B 159 -1 N ALA B 156 O THR B 205 SHEET 5 A 6 GLY B 138 ASP B 146 -1 N TRP B 145 O VAL B 153 SHEET 6 A 6 LEU B 126 GLY B 135 -1 N LEU B 132 O VAL B 140 SHEET 1 B 3 GLY B 211 SER B 212 0 SHEET 2 B 3 LEU B 258 THR B 262 -1 O LEU B 260 N GLY B 211 SHEET 3 B 3 LEU B 265 ILE B 268 -1 O LYS B 267 N LEU B 259 SHEET 1 C 2 PHE B 248 ILE B 249 0 SHEET 2 C 2 ARG B 275 ALA B 276 -1 O ARG B 275 N ILE B 249 SHEET 1 D 2 PTR B 284 VAL B 285 0 SHEET 2 D 2 THR B 306 PHE B 307 -1 O PHE B 307 N PTR B 284 SHEET 1 E 6 CYS A 119 LEU A 120 0 SHEET 2 E 6 LEU A 192 VAL A 196 1 O TYR A 193 N CYS A 119 SHEET 3 E 6 LYS A 202 GLU A 206 -1 O VAL A 204 N GLY A 194 SHEET 4 E 6 THR A 152 CYS A 159 -1 N ALA A 156 O THR A 205 SHEET 5 E 6 GLY A 138 ASP A 146 -1 N ARG A 141 O VAL A 157 SHEET 6 E 6 LEU A 126 GLY A 135 -1 N LEU A 132 O VAL A 140 SHEET 1 F 3 GLY A 211 SER A 212 0 SHEET 2 F 3 LEU A 258 THR A 262 -1 O LEU A 260 N GLY A 211 SHEET 3 F 3 LEU A 265 ILE A 268 -1 O LYS A 267 N LEU A 259 SHEET 1 G 2 PHE A 248 ILE A 249 0 SHEET 2 G 2 ARG A 275 ALA A 276 -1 O ARG A 275 N ILE A 249 SHEET 1 H 2 PTR A 284 VAL A 285 0 SHEET 2 H 2 THR A 306 PHE A 307 -1 O PHE A 307 N PTR A 284 LINK C HIS B 283 N PTR B 284 1555 1555 1.34 LINK C PTR B 284 N VAL B 285 1555 1555 1.34 LINK C HIS A 283 N PTR A 284 1555 1555 1.34 LINK C PTR A 284 N VAL A 285 1555 1555 1.32 CISPEP 1 PRO B 199 PRO B 200 0 -5.90 CISPEP 2 PRO A 199 PRO A 200 0 -1.68 SITE 1 AC1 11 LEU B 132 GLY B 133 ASP B 134 ALA B 156 SITE 2 AC1 11 GLU B 206 ALA B 208 PRO B 209 GLY B 211 SITE 3 AC1 11 ARG B 256 LEU B 259 GLY B 269 SITE 1 AC2 14 LEU A 132 GLY A 133 ASP A 134 ALA A 156 SITE 2 AC2 14 GLU A 206 ALA A 208 PRO A 209 LEU A 210 SITE 3 AC2 14 GLY A 211 LYS A 219 ARG A 256 LEU A 259 SITE 4 AC2 14 GLY A 269 ASP B 383 CRYST1 201.202 42.480 71.031 90.00 95.29 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004970 0.000000 0.000460 0.00000 SCALE2 0.000000 0.023540 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014139 0.00000