HEADER SIGNALING PROTEIN, PROTEIN BINDING 27-APR-12 4EWI TITLE CRYSTAL STRUCTURE OF THE NLRP4 PYRIN DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 4; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CANCER/TESTIS ANTIGEN 58, CT58, PAAD AND NACHT-CONTAINING COMPND 5 PROTEIN 2, PYRIN AND NACHT-CONTAINING PROTEIN 2, PYRIN-CONTAINING COMPND 6 APAF1-LIKE PROTEIN 4, RIBONUCLEASE INHIBITOR 2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NLRP4, NALP4, PAN2, PYPAF4, RNH2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 STAR DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS NLR PROTEINS, DEATH DOMAIN, PYRIN DOMAIN, NLRP4, ASC, INNATE IMMUNE KEYWDS 2 SYSTEM, INFLAMMASOME, APOPTOSIS, PROTEIN-PROTEIN INTERACTION, KEYWDS 3 SIGNALING PROTEIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR C.EIBL,M.HESSENBERGER,S.PUEHRINGER,R.PAGE,K.DIEDERICHS,W.PETI REVDAT 4 28-FEB-24 4EWI 1 REMARK SEQADV REVDAT 3 15-NOV-17 4EWI 1 REMARK REVDAT 2 31-OCT-12 4EWI 1 JRNL REVDAT 1 05-SEP-12 4EWI 0 JRNL AUTH C.EIBL,S.GRIGORIU,M.HESSENBERGER,J.WENGER,S.PUEHRINGER, JRNL AUTH 2 A.S.PINHEIRO,R.N.WAGNER,M.PROELL,J.C.REED,R.PAGE, JRNL AUTH 3 K.DIEDERICHS,W.PETI JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF THE NLRP4 PYRIN JRNL TITL 2 DOMAIN. JRNL REF BIOCHEMISTRY V. 51 7330 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22928810 JRNL DOI 10.1021/BI3007059 REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1009) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 13245 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 623 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.7653 - 3.6187 1.00 3293 160 0.1801 0.2027 REMARK 3 2 3.6187 - 2.8725 1.00 3148 156 0.2262 0.2803 REMARK 3 3 2.8725 - 2.5095 1.00 3117 146 0.2576 0.3337 REMARK 3 4 2.5095 - 2.2800 0.99 3064 161 0.2794 0.3302 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 49.48 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 11.31370 REMARK 3 B22 (A**2) : 11.31370 REMARK 3 B33 (A**2) : -22.62740 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 1642 REMARK 3 ANGLE : 1.626 2189 REMARK 3 CHIRALITY : 0.090 223 REMARK 3 PLANARITY : 0.009 270 REMARK 3 DIHEDRAL : 16.398 650 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 8:22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.4145 36.4216 13.5441 REMARK 3 T TENSOR REMARK 3 T11: 0.6424 T22: 0.4538 REMARK 3 T33: 0.4459 T12: -0.0063 REMARK 3 T13: 0.0881 T23: 0.0453 REMARK 3 L TENSOR REMARK 3 L11: 6.4989 L22: 7.6471 REMARK 3 L33: 7.2219 L12: 0.0637 REMARK 3 L13: 2.0421 L23: -3.2234 REMARK 3 S TENSOR REMARK 3 S11: -0.1395 S12: -0.1502 S13: -0.4062 REMARK 3 S21: -0.2051 S22: 0.0744 S23: -0.0398 REMARK 3 S31: 0.7371 S32: 0.6829 S33: 0.0650 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 23:54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2680 33.2832 21.2854 REMARK 3 T TENSOR REMARK 3 T11: 0.8099 T22: 0.5333 REMARK 3 T33: 0.5912 T12: -0.0904 REMARK 3 T13: 0.1460 T23: 0.0341 REMARK 3 L TENSOR REMARK 3 L11: 7.6905 L22: 3.5417 REMARK 3 L33: 6.9517 L12: 0.4837 REMARK 3 L13: -1.7232 L23: -0.7690 REMARK 3 S TENSOR REMARK 3 S11: -0.3378 S12: -0.5653 S13: -0.5379 REMARK 3 S21: 0.3779 S22: 0.0281 S23: 0.4596 REMARK 3 S31: 0.4874 S32: -0.7894 S33: 0.3097 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 55:95 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.1960 44.8650 17.7915 REMARK 3 T TENSOR REMARK 3 T11: 0.5090 T22: 0.3044 REMARK 3 T33: 0.3760 T12: -0.0176 REMARK 3 T13: 0.0870 T23: -0.0199 REMARK 3 L TENSOR REMARK 3 L11: 9.9248 L22: 4.6236 REMARK 3 L33: 7.7241 L12: -0.7408 REMARK 3 L13: 1.7486 L23: -0.4932 REMARK 3 S TENSOR REMARK 3 S11: -0.1492 S12: -0.6642 S13: 0.1411 REMARK 3 S21: 0.2278 S22: 0.2386 S23: 0.1209 REMARK 3 S31: 0.2011 S32: -0.0916 S33: -0.0894 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN B AND RESID 8:22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9476 56.4083 4.5460 REMARK 3 T TENSOR REMARK 3 T11: 0.6040 T22: 0.3258 REMARK 3 T33: 0.5012 T12: -0.0476 REMARK 3 T13: -0.0786 T23: -0.0289 REMARK 3 L TENSOR REMARK 3 L11: 6.3778 L22: 8.6053 REMARK 3 L33: 2.0000 L12: -2.7348 REMARK 3 L13: 1.4434 L23: -4.2029 REMARK 3 S TENSOR REMARK 3 S11: -0.0718 S12: 0.1876 S13: 0.8153 REMARK 3 S21: 0.8116 S22: -0.1796 S23: 0.2460 REMARK 3 S31: -1.3855 S32: 0.1490 S33: 0.2514 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN B AND RESID 23:54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1992 49.9851 -5.4976 REMARK 3 T TENSOR REMARK 3 T11: 0.5375 T22: 0.7885 REMARK 3 T33: 0.5856 T12: 0.0054 REMARK 3 T13: -0.1714 T23: 0.0558 REMARK 3 L TENSOR REMARK 3 L11: 5.6096 L22: 3.6874 REMARK 3 L33: 8.7822 L12: 0.2832 REMARK 3 L13: 0.5817 L23: 3.2662 REMARK 3 S TENSOR REMARK 3 S11: 0.0613 S12: 0.8523 S13: -0.3450 REMARK 3 S21: -0.6122 S22: -0.2559 S23: 0.7518 REMARK 3 S31: -0.3241 S32: -1.1082 S33: 0.1946 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN B AND RESID 55:94 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3331 47.2764 0.0801 REMARK 3 T TENSOR REMARK 3 T11: 0.5768 T22: 0.4603 REMARK 3 T33: 0.3644 T12: -0.0494 REMARK 3 T13: -0.0313 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 6.6024 L22: 7.0644 REMARK 3 L33: 4.3052 L12: 1.1306 REMARK 3 L13: -1.0346 L23: -0.2157 REMARK 3 S TENSOR REMARK 3 S11: -0.1874 S12: 0.5195 S13: -0.1069 REMARK 3 S21: -0.6863 S22: 0.0355 S23: -0.2068 REMARK 3 S31: 0.1878 S32: -0.3420 S33: 0.1519 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4EWI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000072156. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-AUG-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841, 0.97958, 0.97973, REMARK 200 0.9719 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13300 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 40.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : 0.82200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M DISODIUM TARTRATE, 2.2 M REMARK 280 AMMONIUM SULFATE, PH 7.2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.28800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.64400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 41.64400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 83.28800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 107.57248 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 41.64400 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 310 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 SER A 4 REMARK 465 THR A 96 REMARK 465 LYS A 97 REMARK 465 THR A 98 REMARK 465 TYR A 99 REMARK 465 GLN A 100 REMARK 465 ALA A 101 REMARK 465 HIS A 102 REMARK 465 ALA A 103 REMARK 465 LYS A 104 REMARK 465 GLN A 105 REMARK 465 LYS A 106 REMARK 465 PHE A 107 REMARK 465 SER A 108 REMARK 465 ARG A 109 REMARK 465 LEU A 110 REMARK 465 GLU A 111 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 SER B 4 REMARK 465 TYR B 95 REMARK 465 THR B 96 REMARK 465 LYS B 97 REMARK 465 THR B 98 REMARK 465 TYR B 99 REMARK 465 GLN B 100 REMARK 465 ALA B 101 REMARK 465 HIS B 102 REMARK 465 ALA B 103 REMARK 465 LYS B 104 REMARK 465 GLN B 105 REMARK 465 LYS B 106 REMARK 465 PHE B 107 REMARK 465 SER B 108 REMARK 465 ARG B 109 REMARK 465 LEU B 110 REMARK 465 GLU B 111 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 21 NH2 ARG B 24 2.16 REMARK 500 OE1 GLU A 91 O HOH A 319 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 37 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 LEU A 37 CB - CG - CD2 ANGL. DEV. = 13.2 DEGREES REMARK 500 LEU A 39 CB - CG - CD1 ANGL. DEV. = -10.9 DEGREES REMARK 500 LEU B 39 CA - CB - CG ANGL. DEV. = 15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 64 169.98 60.72 REMARK 500 ARG A 81 47.80 -105.23 REMARK 500 ARG A 81 44.91 -103.28 REMARK 500 GLU B 64 169.08 59.30 REMARK 500 ARG B 81 47.80 -102.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 202 DBREF 4EWI A 1 110 UNP Q96MN2 NALP4_HUMAN 1 110 DBREF 4EWI B 1 110 UNP Q96MN2 NALP4_HUMAN 1 110 SEQADV 4EWI GLY A -1 UNP Q96MN2 EXPRESSION TAG SEQADV 4EWI SER A 0 UNP Q96MN2 EXPRESSION TAG SEQADV 4EWI GLU A 111 UNP Q96MN2 CLONING ARTIFACT SEQADV 4EWI GLY B -1 UNP Q96MN2 EXPRESSION TAG SEQADV 4EWI SER B 0 UNP Q96MN2 EXPRESSION TAG SEQADV 4EWI GLU B 111 UNP Q96MN2 CLONING ARTIFACT SEQRES 1 A 113 GLY SER MET ALA ALA SER PHE PHE SER ASP PHE GLY LEU SEQRES 2 A 113 MET TRP TYR LEU GLU GLU LEU LYS LYS GLU GLU PHE ARG SEQRES 3 A 113 LYS PHE LYS GLU HIS LEU LYS GLN MET THR LEU GLN LEU SEQRES 4 A 113 GLU LEU LYS GLN ILE PRO TRP THR GLU VAL LYS LYS ALA SEQRES 5 A 113 SER ARG GLU GLU LEU ALA ASN LEU LEU ILE LYS HIS TYR SEQRES 6 A 113 GLU GLU GLN GLN ALA TRP ASN ILE THR LEU ARG ILE PHE SEQRES 7 A 113 GLN LYS MET ASP ARG LYS ASP LEU CYS MET LYS VAL MET SEQRES 8 A 113 ARG GLU ARG THR GLY TYR THR LYS THR TYR GLN ALA HIS SEQRES 9 A 113 ALA LYS GLN LYS PHE SER ARG LEU GLU SEQRES 1 B 113 GLY SER MET ALA ALA SER PHE PHE SER ASP PHE GLY LEU SEQRES 2 B 113 MET TRP TYR LEU GLU GLU LEU LYS LYS GLU GLU PHE ARG SEQRES 3 B 113 LYS PHE LYS GLU HIS LEU LYS GLN MET THR LEU GLN LEU SEQRES 4 B 113 GLU LEU LYS GLN ILE PRO TRP THR GLU VAL LYS LYS ALA SEQRES 5 B 113 SER ARG GLU GLU LEU ALA ASN LEU LEU ILE LYS HIS TYR SEQRES 6 B 113 GLU GLU GLN GLN ALA TRP ASN ILE THR LEU ARG ILE PHE SEQRES 7 B 113 GLN LYS MET ASP ARG LYS ASP LEU CYS MET LYS VAL MET SEQRES 8 B 113 ARG GLU ARG THR GLY TYR THR LYS THR TYR GLN ALA HIS SEQRES 9 B 113 ALA LYS GLN LYS PHE SER ARG LEU GLU HET CL A 201 1 HET CL B 201 1 HET SO4 B 202 5 HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION FORMUL 3 CL 2(CL 1-) FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *40(H2 O) HELIX 1 1 PHE A 9 GLU A 16 1 8 HELIX 2 2 LYS A 19 LEU A 37 1 19 HELIX 3 3 PRO A 43 ALA A 50 1 8 HELIX 4 4 SER A 51 MET A 79 1 29 HELIX 5 5 ARG A 81 GLY A 94 1 14 HELIX 6 6 PHE B 9 GLU B 16 1 8 HELIX 7 7 LYS B 19 LEU B 37 1 19 HELIX 8 8 PRO B 43 ALA B 50 1 8 HELIX 9 9 SER B 51 MET B 79 1 29 HELIX 10 10 ARG B 81 GLY B 94 1 14 SITE 1 AC1 1 ARG A 52 SITE 1 AC2 1 ARG B 52 SITE 1 AC3 5 ARG A 24 LYS A 25 LYS B 31 TRP B 44 SITE 2 AC3 5 LYS B 48 CRYST1 62.107 62.107 124.932 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016101 0.009296 0.000000 0.00000 SCALE2 0.000000 0.018592 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008004 0.00000