HEADER TRANSPORT PROTEIN 01-MAY-12 4EYK TITLE CRYSTAL STRUCTURE OF SOLUTE BINDING PROTEIN OF ABC TRANSPORTER FROM TITLE 2 RHODOPSEUDOMONAS PALUSTRIS BISB5 IN COMPLEX WITH 3,4-DIHYDROXY TITLE 3 BENZOIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: TWIN-ARGININE TRANSLOCATION PATHWAY SIGNAL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 27-392; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOPSEUDOMONAS PALUSTRIS; SOURCE 3 ORGANISM_TAXID: 316057; SOURCE 4 STRAIN: BISB5; SOURCE 5 GENE: RPD_1586; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PMCSG7 KEYWDS PSI-BIOLOGY, MCSG, MIDWEST CENTER FOR STRUCTURAL GENOMICS, KEYWDS 2 TRANSPORTER, LIGNIN DEGRADATION PRODUCT, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,J.MACK,S.ZERBS,F.COLLART,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 3 24-OCT-12 4EYK 1 JRNL REVDAT 2 12-SEP-12 4EYK 1 JRNL REVDAT 1 30-MAY-12 4EYK 0 JRNL AUTH K.MICHALSKA,C.CHANG,J.C.MACK,S.ZERBS,A.JOACHIMIAK, JRNL AUTH 2 F.R.COLLART JRNL TITL CHARACTERIZATION OF TRANSPORT PROTEINS FOR AROMATIC JRNL TITL 2 COMPOUNDS DERIVED FROM LIGNIN: BENZOATE DERIVATIVE BINDING JRNL TITL 3 PROTEINS. JRNL REF J.MOL.BIOL. V. 423 555 2012 JRNL REFN ISSN 0022-2836 JRNL PMID 22925578 JRNL DOI 10.1016/J.JMB.2012.08.017 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 31816 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.133 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1611 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1981 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.1730 REMARK 3 BIN FREE R VALUE SET COUNT : 112 REMARK 3 BIN FREE R VALUE : 0.2400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2732 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 252 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.85000 REMARK 3 B22 (A**2) : 0.44000 REMARK 3 B33 (A**2) : -2.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.292 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.113 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.987 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2898 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3927 ; 1.269 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 383 ; 5.823 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;35.325 ;25.263 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 506 ;14.555 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;10.351 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 434 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2198 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2898 ; 2.880 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 79 ;33.691 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3009 ;23.112 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 28 A 146 REMARK 3 ORIGIN FOR THE GROUP (A): 16.5968 10.5068 83.1839 REMARK 3 T TENSOR REMARK 3 T11: 0.0727 T22: 0.0363 REMARK 3 T33: 0.0169 T12: -0.0270 REMARK 3 T13: 0.0098 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.2040 L22: 0.1010 REMARK 3 L33: 0.8667 L12: -0.1263 REMARK 3 L13: -0.1245 L23: 0.2105 REMARK 3 S TENSOR REMARK 3 S11: -0.0259 S12: 0.0126 S13: -0.0255 REMARK 3 S21: 0.0418 S22: -0.0183 S23: 0.0217 REMARK 3 S31: 0.1764 S32: -0.0819 S33: 0.0442 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 147 A 276 REMARK 3 ORIGIN FOR THE GROUP (A): 26.1959 38.2863 82.1175 REMARK 3 T TENSOR REMARK 3 T11: 0.0436 T22: 0.0336 REMARK 3 T33: 0.0121 T12: -0.0016 REMARK 3 T13: 0.0006 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.1032 L22: 0.1353 REMARK 3 L33: 0.0800 L12: 0.0273 REMARK 3 L13: -0.0441 L23: 0.0233 REMARK 3 S TENSOR REMARK 3 S11: 0.0058 S12: -0.0061 S13: 0.0096 REMARK 3 S21: 0.0046 S22: -0.0010 S23: -0.0002 REMARK 3 S31: -0.0079 S32: -0.0023 S33: -0.0048 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 277 A 304 REMARK 3 ORIGIN FOR THE GROUP (A): 21.3560 21.3557 65.0284 REMARK 3 T TENSOR REMARK 3 T11: 0.0535 T22: 0.0549 REMARK 3 T33: 0.0105 T12: -0.0129 REMARK 3 T13: -0.0049 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.0006 L22: 0.0430 REMARK 3 L33: 0.0261 L12: 0.0003 REMARK 3 L13: -0.0012 L23: -0.0316 REMARK 3 S TENSOR REMARK 3 S11: -0.0057 S12: 0.0032 S13: 0.0008 REMARK 3 S21: -0.0355 S22: 0.0130 S23: 0.0064 REMARK 3 S31: 0.0288 S32: -0.0226 S33: -0.0073 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 305 A 359 REMARK 3 ORIGIN FOR THE GROUP (A): 28.6178 7.6562 77.0788 REMARK 3 T TENSOR REMARK 3 T11: 0.0651 T22: 0.0340 REMARK 3 T33: 0.0128 T12: -0.0003 REMARK 3 T13: 0.0058 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.0505 L22: 0.1835 REMARK 3 L33: 0.3122 L12: -0.0945 REMARK 3 L13: -0.0362 L23: 0.0304 REMARK 3 S TENSOR REMARK 3 S11: -0.0119 S12: 0.0060 S13: -0.0047 REMARK 3 S21: 0.0197 S22: -0.0069 S23: 0.0081 REMARK 3 S31: 0.0819 S32: 0.0088 S33: 0.0188 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 360 A 390 REMARK 3 ORIGIN FOR THE GROUP (A): 31.9269 28.5535 71.3566 REMARK 3 T TENSOR REMARK 3 T11: 0.0454 T22: 0.0381 REMARK 3 T33: 0.0147 T12: 0.0006 REMARK 3 T13: -0.0001 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.0088 L22: 0.0567 REMARK 3 L33: 0.0245 L12: -0.0051 REMARK 3 L13: -0.0104 L23: 0.0315 REMARK 3 S TENSOR REMARK 3 S11: 0.0012 S12: 0.0003 S13: -0.0020 REMARK 3 S21: 0.0004 S22: -0.0010 S23: -0.0073 REMARK 3 S31: 0.0018 S32: -0.0035 S33: -0.0002 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4EYK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-12. REMARK 100 THE RCSB ID CODE IS RCSB072230. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97921 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31855 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 38.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.53300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.270 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, MLPHARE, DM, SHELXDE, RESOLVE, ARP/WARP, REMARK 200 COOT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE, 20% ISO-PROPANOL, REMARK 280 20% PEG 4000, PH 5.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.02100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.02100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 23.30550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 65.95050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 23.30550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 65.95050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.02100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 23.30550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 65.95050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.02100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 23.30550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 65.95050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 553 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 25 REMARK 465 ASN A 26 REMARK 465 ALA A 27 REMARK 465 LYS A 391 REMARK 465 LYS A 392 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 289 O HOH A 738 2.15 REMARK 500 NH1 ARG A 136 O HOH A 732 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 103 81.56 71.67 REMARK 500 ALA A 127 -62.16 -136.81 REMARK 500 SER A 144 -89.31 -92.61 REMARK 500 LYS A 218 68.13 36.51 REMARK 500 MSE A 257 47.11 -95.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DHB A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MCSG-APC102213 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 4EY3 RELATED DB: PDB REMARK 900 RELATED ID: 4EYG RELATED DB: PDB DBREF 4EYK A 27 392 UNP Q13AR6 Q13AR6_RHOPS 27 392 SEQADV 4EYK SER A 25 UNP Q13AR6 EXPRESSION TAG SEQADV 4EYK ASN A 26 UNP Q13AR6 EXPRESSION TAG SEQRES 1 A 368 SER ASN ALA GLU ASP THR PHE LYS VAL GLY LEU ILE VAL SEQRES 2 A 368 PRO MSE THR GLY GLY GLN ALA SER THR GLY LYS GLN ILE SEQRES 3 A 368 ASP ASN ALA ILE LYS LEU TYR ILE LYS LYS HIS GLY ASP SEQRES 4 A 368 THR VAL ALA GLY LYS LYS ILE GLU VAL ILE LEU LYS ASP SEQRES 5 A 368 ASP ALA ALA ILE PRO ASP ASN THR LYS ARG LEU ALA GLN SEQRES 6 A 368 GLU LEU ILE VAL ASN ASP LYS VAL ASN VAL ILE ALA GLY SEQRES 7 A 368 PHE GLY ILE THR PRO ALA ALA LEU ALA ALA ALA PRO LEU SEQRES 8 A 368 ALA THR GLN ALA LYS VAL PRO GLU ILE VAL MSE ALA ALA SEQRES 9 A 368 GLY THR SER ILE ILE THR GLU ARG SER PRO TYR ILE VAL SEQRES 10 A 368 ARG THR SER PHE THR LEU ALA GLN SER SER ILE ILE ILE SEQRES 11 A 368 GLY ASP TRP ALA ALA LYS ASN GLY ILE LYS LYS VAL ALA SEQRES 12 A 368 THR LEU THR SER ASP TYR ALA PRO GLY ASN ASP ALA LEU SEQRES 13 A 368 ALA PHE PHE LYS GLU ARG PHE THR ALA GLY GLY GLY GLU SEQRES 14 A 368 ILE VAL GLU GLU ILE LYS VAL PRO LEU ALA ASN PRO ASP SEQRES 15 A 368 PHE ALA PRO PHE LEU GLN ARG MSE LYS ASP ALA LYS PRO SEQRES 16 A 368 ASP ALA MSE PHE VAL PHE VAL PRO ALA GLY GLN GLY GLY SEQRES 17 A 368 ASN PHE MSE LYS GLN PHE ALA GLU ARG GLY LEU ASP LYS SEQRES 18 A 368 SER GLY ILE LYS VAL ILE GLY PRO GLY ASP VAL MSE ASP SEQRES 19 A 368 ASP ASP LEU LEU ASN SER MSE GLY ASP ALA ALA LEU GLY SEQRES 20 A 368 VAL VAL THR ALA HIS MSE TYR SER ALA ALA HIS PRO SER SEQRES 21 A 368 ALA MSE ASN LYS GLU PHE VAL ALA ALA TYR LYS LYS GLU SEQRES 22 A 368 PHE GLY GLN ARG PRO GLY PHE MSE ALA VAL GLY GLY TYR SEQRES 23 A 368 ASP GLY ILE HIS LEU VAL PHE GLU ALA LEU LYS LYS THR SEQRES 24 A 368 GLY GLY LYS ALA ASP GLY ASP SER LEU ILE ALA ALA MSE SEQRES 25 A 368 LYS GLY MSE LYS TRP GLU SER PRO ARG GLY PRO ILE SER SEQRES 26 A 368 ILE ASP PRO GLU THR ARG ASP ILE VAL GLN ASN ILE TYR SEQRES 27 A 368 ILE ARG LYS VAL GLU LYS VAL ASP GLY GLU LEU TYR ASN SEQRES 28 A 368 ILE GLU PHE ALA LYS PHE ASP ALA VAL LYS ASP PRO GLY SEQRES 29 A 368 LYS THR LYS LYS MODRES 4EYK MSE A 39 MET SELENOMETHIONINE MODRES 4EYK MSE A 126 MET SELENOMETHIONINE MODRES 4EYK MSE A 214 MET SELENOMETHIONINE MODRES 4EYK MSE A 222 MET SELENOMETHIONINE MODRES 4EYK MSE A 235 MET SELENOMETHIONINE MODRES 4EYK MSE A 257 MET SELENOMETHIONINE MODRES 4EYK MSE A 265 MET SELENOMETHIONINE MODRES 4EYK MSE A 277 MET SELENOMETHIONINE MODRES 4EYK MSE A 286 MET SELENOMETHIONINE MODRES 4EYK MSE A 305 MET SELENOMETHIONINE MODRES 4EYK MSE A 336 MET SELENOMETHIONINE MODRES 4EYK MSE A 339 MET SELENOMETHIONINE HET MSE A 39 8 HET MSE A 126 8 HET MSE A 214 8 HET MSE A 222 8 HET MSE A 235 8 HET MSE A 257 8 HET MSE A 265 8 HET MSE A 277 8 HET MSE A 286 8 HET MSE A 305 8 HET MSE A 336 8 HET MSE A 339 8 HET DHB A 401 11 HET EDO A 402 4 HETNAM MSE SELENOMETHIONINE HETNAM DHB 3,4-DIHYDROXYBENZOIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 2 DHB C7 H6 O4 FORMUL 3 EDO C2 H6 O2 FORMUL 4 HOH *252(H2 O) HELIX 1 1 GLN A 43 GLY A 62 1 20 HELIX 2 2 ILE A 80 ASN A 94 1 15 HELIX 3 3 ILE A 105 LYS A 120 1 16 HELIX 4 4 THR A 130 SER A 137 5 8 HELIX 5 5 THR A 146 ASN A 161 1 16 HELIX 6 6 TYR A 173 GLY A 190 1 18 HELIX 7 7 PHE A 207 LYS A 218 1 12 HELIX 8 8 GLN A 230 ARG A 241 1 12 HELIX 9 9 GLY A 242 SER A 246 5 5 HELIX 10 10 ASP A 255 MSE A 257 5 3 HELIX 11 11 ASP A 258 ASN A 263 1 6 HELIX 12 12 SER A 264 MSE A 265 5 2 HELIX 13 13 GLY A 266 LEU A 270 5 5 HELIX 14 14 SER A 284 GLY A 299 1 16 HELIX 15 15 GLY A 303 THR A 323 1 21 HELIX 16 16 ASP A 328 LYS A 337 1 10 SHEET 1 A 6 THR A 64 VAL A 65 0 SHEET 2 A 6 LYS A 68 ASP A 76 -1 O LYS A 68 N VAL A 65 SHEET 3 A 6 THR A 30 VAL A 37 1 N VAL A 33 O GLU A 71 SHEET 4 A 6 VAL A 99 GLY A 102 1 O VAL A 99 N GLY A 34 SHEET 5 A 6 GLU A 123 VAL A 125 1 O ILE A 124 N ILE A 100 SHEET 6 A 6 ILE A 140 ARG A 142 1 O VAL A 141 N VAL A 125 SHEET 1 B 8 GLU A 193 VAL A 200 0 SHEET 2 B 8 LYS A 165 SER A 171 1 N THR A 168 O ILE A 198 SHEET 3 B 8 ALA A 221 PHE A 225 1 O PHE A 223 N LEU A 169 SHEET 4 B 8 LYS A 249 PRO A 253 1 O ILE A 251 N MSE A 222 SHEET 5 B 8 VAL A 273 HIS A 276 1 O VAL A 273 N VAL A 250 SHEET 6 B 8 ILE A 357 VAL A 369 -1 O ARG A 364 N THR A 274 SHEET 7 B 8 GLY A 346 ILE A 350 -1 N SER A 349 O VAL A 358 SHEET 8 B 8 LYS A 340 SER A 343 -1 N TRP A 341 O ILE A 348 SHEET 1 C 7 GLU A 193 VAL A 200 0 SHEET 2 C 7 LYS A 165 SER A 171 1 N THR A 168 O ILE A 198 SHEET 3 C 7 ALA A 221 PHE A 225 1 O PHE A 223 N LEU A 169 SHEET 4 C 7 LYS A 249 PRO A 253 1 O ILE A 251 N MSE A 222 SHEET 5 C 7 VAL A 273 HIS A 276 1 O VAL A 273 N VAL A 250 SHEET 6 C 7 ILE A 357 VAL A 369 -1 O ARG A 364 N THR A 274 SHEET 7 C 7 GLU A 372 VAL A 384 -1 O GLU A 372 N VAL A 369 LINK C PRO A 38 N MSE A 39 1555 1555 1.34 LINK C MSE A 39 N THR A 40 1555 1555 1.33 LINK C VAL A 125 N MSE A 126 1555 1555 1.33 LINK C MSE A 126 N ALA A 127 1555 1555 1.33 LINK C ARG A 213 N MSE A 214 1555 1555 1.33 LINK C MSE A 214 N LYS A 215 1555 1555 1.34 LINK C ALA A 221 N MSE A 222 1555 1555 1.33 LINK C MSE A 222 N PHE A 223 1555 1555 1.33 LINK C PHE A 234 N MSE A 235 1555 1555 1.33 LINK C MSE A 235 N ALYS A 236 1555 1555 1.33 LINK C MSE A 235 N BLYS A 236 1555 1555 1.33 LINK C VAL A 256 N MSE A 257 1555 1555 1.34 LINK C MSE A 257 N ASP A 258 1555 1555 1.32 LINK C SER A 264 N MSE A 265 1555 1555 1.33 LINK C MSE A 265 N GLY A 266 1555 1555 1.33 LINK C HIS A 276 N MSE A 277 1555 1555 1.33 LINK C MSE A 277 N TYR A 278 1555 1555 1.33 LINK C ALA A 285 N MSE A 286 1555 1555 1.33 LINK C MSE A 286 N ASN A 287 1555 1555 1.33 LINK C PHE A 304 N MSE A 305 1555 1555 1.33 LINK C MSE A 305 N ALA A 306 1555 1555 1.33 LINK C ALA A 335 N MSE A 336 1555 1555 1.33 LINK C MSE A 336 N LYS A 337 1555 1555 1.33 LINK C GLY A 338 N MSE A 339 1555 1555 1.33 LINK C MSE A 339 N LYS A 340 1555 1555 1.33 SITE 1 AC1 15 GLY A 104 ILE A 105 THR A 106 ALA A 128 SITE 2 AC1 15 GLY A 129 PHE A 145 TYR A 173 PRO A 175 SITE 3 AC1 15 PHE A 225 PRO A 227 ALA A 228 ASP A 255 SITE 4 AC1 15 PHE A 304 MSE A 305 HOH A 532 SITE 1 AC2 7 TYR A 310 ASP A 311 HIS A 314 GLU A 342 SITE 2 AC2 7 SER A 343 PRO A 344 HOH A 659 CRYST1 46.611 131.901 130.042 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021454 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007581 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007690 0.00000