HEADER TRANSFERASE/TRANSFERASE INHIBITOR 02-MAY-12 4EZJ TITLE POTENT AND SELECTIVE INHIBITORS OF PI3K-DELTA: OBTAINING ISOFORM TITLE 2 SELECTIVITY FROM THE AFFINITY POCKET AND TRYPTOPHAN SHELF COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE 3-KINASE CATALYTIC COMPND 3 SUBUNIT GAMMA ISOFORM; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 144-1102; COMPND 6 SYNONYM: PI3-KINASE SUBUNIT GAMMA, PI3K-GAMMA, PI3KGAMMA, PTDINS-3- COMPND 7 KINASE SUBUNIT GAMMA, PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE 3-KINASE COMPND 8 110 KDA CATALYTIC SUBUNIT GAMMA, PTDINS-3-KINASE SUBUNIT P110-GAMMA, COMPND 9 P110GAMMA, PHOSPHOINOSITIDE-3-KINASE CATALYTIC GAMMA POLYPEPTIDE, COMPND 10 SERINE/THREONINE PROTEIN KINASE PIK3CG, P120-PI3K; COMPND 11 EC: 2.7.1.153, 2.7.11.1; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PIK3CG; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS KINASE P110, P110-GAMMA, LIPID KINASE, CYTOPLASMIC, TRANSFERASE- KEYWDS 2 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.M.MURRAY REVDAT 2 13-SEP-23 4EZJ 1 REMARK SEQADV REVDAT 1 17-APR-13 4EZJ 0 JRNL AUTH D.P.SUTHERLIN,S.BAKER,A.BISCONTE,P.M.BLANEY,A.BROWN, JRNL AUTH 2 B.K.CHAN,D.CHANTRY,G.CASTANEDO,P.DEPLEDGE,P.GOLDSMITH, JRNL AUTH 3 D.M.GOLDSTEIN,T.HANCOX,J.KAUR,D.KNOWLES,R.KONDRU,J.LESNICK, JRNL AUTH 4 M.C.LUCAS,C.LEWIS,J.MURRAY,A.J.NADIN,J.NONOMIYA,J.PANG, JRNL AUTH 5 N.PEGG,S.PRICE,K.REIF,B.S.SAFINA,L.SALPHATI,S.STABEN, JRNL AUTH 6 E.M.SEWARD,S.SHUTTLEWORTH,S.SOHAL,Z.K.SWEENEY,M.ULTSCH, JRNL AUTH 7 B.WASZKOWYCZ,B.WEI JRNL TITL POTENT AND SELECTIVE INHIBITORS OF PI3K-DELTA: OBTAINING JRNL TITL 2 ISOFORM SELECTIVITY FROM THE AFFINITY POCKET AND TRYPTOPHAN JRNL TITL 3 SHELF JRNL REF BIOORG.MED.CHEM.LETT. V. 22 4296 2012 JRNL REFN ISSN 0960-894X JRNL PMID 22672799 JRNL DOI 10.1016/J.BMCL.2012.05.027 REMARK 2 REMARK 2 RESOLUTION. 2.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 27473 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1406 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 14 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.67 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.77 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.47 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2756 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2288 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2620 REMARK 3 BIN R VALUE (WORKING SET) : 0.2258 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.93 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 136 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6703 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 91 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 74.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.86620 REMARK 3 B22 (A**2) : 0.79020 REMARK 3 B33 (A**2) : 2.07600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.23280 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.360 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6939 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 9399 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2450 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 180 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1007 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6939 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 903 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7976 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.17 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.53 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.55 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4EZJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000072265. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97740 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27486 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.670 REMARK 200 RESOLUTION RANGE LOW (A) : 55.068 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04800 REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : 0.44000 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1E8X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, 0.2M NH4SO4, 0.1M TRIS-HCL REMARK 280 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K, PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 70.60000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.56000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 70.60000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.56000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 252 REMARK 465 ALA A 253 REMARK 465 LYS A 254 REMARK 465 LYS A 255 REMARK 465 LYS A 256 REMARK 465 SER A 257 REMARK 465 LEU A 258 REMARK 465 MET A 259 REMARK 465 ASP A 260 REMARK 465 ILE A 261 REMARK 465 PRO A 262 REMARK 465 GLU A 263 REMARK 465 SER A 264 REMARK 465 GLN A 265 REMARK 465 SER A 266 REMARK 465 GLU A 321 REMARK 465 GLU A 322 REMARK 465 TRP A 323 REMARK 465 PRO A 324 REMARK 465 LEU A 325 REMARK 465 VAL A 326 REMARK 465 ASP A 327 REMARK 465 ASP A 328 REMARK 465 CYS A 329 REMARK 465 THR A 330 REMARK 465 GLY A 331 REMARK 465 VAL A 332 REMARK 465 THR A 333 REMARK 465 GLY A 334 REMARK 465 TYR A 335 REMARK 465 HIS A 336 REMARK 465 GLU A 337 REMARK 465 GLN A 338 REMARK 465 LEU A 339 REMARK 465 THR A 340 REMARK 465 ILE A 341 REMARK 465 HIS A 342 REMARK 465 GLY A 343 REMARK 465 LYS A 344 REMARK 465 ASP A 345 REMARK 465 HIS A 346 REMARK 465 GLU A 347 REMARK 465 SER A 348 REMARK 465 VAL A 349 REMARK 465 PHE A 350 REMARK 465 THR A 351 REMARK 465 VAL A 352 REMARK 465 SER A 353 REMARK 465 LEU A 354 REMARK 465 TRP A 355 REMARK 465 ASP A 356 REMARK 465 GLY A 436 REMARK 465 LYS A 437 REMARK 465 ALA A 438 REMARK 465 PRO A 439 REMARK 465 ALA A 440 REMARK 465 LEU A 441 REMARK 465 SER A 442 REMARK 465 SER A 443 REMARK 465 LYS A 444 REMARK 465 ALA A 445 REMARK 465 SER A 446 REMARK 465 ALA A 447 REMARK 465 GLU A 448 REMARK 465 SER A 449 REMARK 465 PRO A 450 REMARK 465 SER A 451 REMARK 465 SER A 452 REMARK 465 GLU A 453 REMARK 465 SER A 454 REMARK 465 LYS A 455 REMARK 465 GLY A 456 REMARK 465 LYS A 457 REMARK 465 VAL A 458 REMARK 465 GLN A 459 REMARK 465 LYS A 490 REMARK 465 GLY A 491 REMARK 465 GLU A 492 REMARK 465 ASP A 493 REMARK 465 GLN A 494 REMARK 465 GLY A 495 REMARK 465 SER A 496 REMARK 465 TYR A 523 REMARK 465 CYS A 524 REMARK 465 ILE A 527 REMARK 465 ALA A 528 REMARK 465 LEU A 529 REMARK 465 PRO A 530 REMARK 465 LYS A 531 REMARK 465 HIS A 532 REMARK 465 GLN A 533 REMARK 465 PRO A 534 REMARK 465 THR A 535 REMARK 465 PRO A 536 REMARK 465 ASP A 537 REMARK 465 PRO A 538 REMARK 465 GLU A 539 REMARK 465 GLY A 540 REMARK 465 ASP A 541 REMARK 465 ARG A 542 REMARK 465 VAL A 543 REMARK 465 ARG A 544 REMARK 465 ALA A 545 REMARK 465 HIS A 967 REMARK 465 ILE A 968 REMARK 465 LEU A 969 REMARK 465 GLY A 970 REMARK 465 ASN A 971 REMARK 465 TYR A 972 REMARK 465 LYS A 973 REMARK 465 SER A 974 REMARK 465 PHE A 975 REMARK 465 LEU A 976 REMARK 465 GLY A 977 REMARK 465 ILE A 978 REMARK 465 ASN A 979 REMARK 465 LYS A 980 REMARK 465 ILE A 1094 REMARK 465 LYS A 1095 REMARK 465 GLN A 1096 REMARK 465 GLY A 1097 REMARK 465 GLU A 1098 REMARK 465 LYS A 1099 REMARK 465 HIS A 1100 REMARK 465 SER A 1101 REMARK 465 ALA A 1102 REMARK 465 HIS A 1103 REMARK 465 HIS A 1104 REMARK 465 HIS A 1105 REMARK 465 HIS A 1106 REMARK 465 HIS A 1107 REMARK 465 HIS A 1108 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 143 CG SD CE REMARK 470 ASN A 217 CG OD1 ND2 REMARK 470 LEU A 747 CG CD1 CD2 REMARK 470 LEU A 752 CG CD1 CD2 REMARK 470 GLU A 755 CG CD OE1 OE2 REMARK 470 LYS A 756 CG CD CE NZ REMARK 470 TYR A 757 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 758 CG OD1 OD2 REMARK 470 LYS A 807 CG CD CE NZ REMARK 470 LYS A 808 CG CD CE NZ REMARK 470 LYS A 809 CG CD CE NZ REMARK 470 HIS A 834 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A1045 CG CD CE NZ REMARK 470 LEU A1090 CG CD1 CD2 REMARK 470 LEU A1092 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN A 893 O VAL A 896 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 300 N - CA - C ANGL. DEV. = 15.2 DEGREES REMARK 500 SER A 753 CB - CA - C ANGL. DEV. = -12.5 DEGREES REMARK 500 LYS A 809 N - CA - C ANGL. DEV. = 19.5 DEGREES REMARK 500 LYS A1045 CB - CA - C ANGL. DEV. = -19.9 DEGREES REMARK 500 LYS A1045 N - CA - C ANGL. DEV. = 24.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 217 72.92 -155.68 REMARK 500 SER A 227 -129.61 51.07 REMARK 500 ASP A 269 54.71 -119.68 REMARK 500 ASN A 376 -61.01 -121.44 REMARK 500 HIS A 389 111.50 -166.17 REMARK 500 GLN A 391 -6.06 68.42 REMARK 500 GLU A 406 -18.54 -48.22 REMARK 500 TRP A 410 -56.74 -129.85 REMARK 500 ASP A 521 79.35 -153.99 REMARK 500 PHE A 578 47.02 -103.10 REMARK 500 ASN A 634 0.40 -69.22 REMARK 500 ALA A 754 153.54 94.45 REMARK 500 LYS A 756 -144.13 125.75 REMARK 500 ASP A 758 129.51 113.59 REMARK 500 PHE A 783 146.24 -173.12 REMARK 500 ALA A 797 66.47 -103.84 REMARK 500 ILE A 798 -37.03 -38.55 REMARK 500 LYS A 807 -0.25 88.51 REMARK 500 LYS A 808 36.95 -156.85 REMARK 500 CYS A 869 104.01 -162.69 REMARK 500 SER A 998 107.01 -161.67 REMARK 500 LYS A1001 65.92 -105.65 REMARK 500 PRO A1040 -128.26 -70.13 REMARK 500 LYS A1045 -45.78 -177.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 753 ALA A 754 46.97 REMARK 500 SER A 806 LYS A 807 143.22 REMARK 500 LYS A 808 LYS A 809 149.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0SC A 1201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EZK RELATED DB: PDB REMARK 900 RELATED ID: 4EZL RELATED DB: PDB DBREF 4EZJ A 144 1102 UNP P48736 PK3CG_HUMAN 144 1102 SEQADV 4EZJ MET A 143 UNP P48736 EXPRESSION TAG SEQADV 4EZJ THR A 802 UNP P48736 LYS 802 ENGINEERED MUTATION SEQADV 4EZJ HIS A 1103 UNP P48736 EXPRESSION TAG SEQADV 4EZJ HIS A 1104 UNP P48736 EXPRESSION TAG SEQADV 4EZJ HIS A 1105 UNP P48736 EXPRESSION TAG SEQADV 4EZJ HIS A 1106 UNP P48736 EXPRESSION TAG SEQADV 4EZJ HIS A 1107 UNP P48736 EXPRESSION TAG SEQADV 4EZJ HIS A 1108 UNP P48736 EXPRESSION TAG SEQRES 1 A 966 MET SER GLU GLU SER GLN ALA PHE GLN ARG GLN LEU THR SEQRES 2 A 966 ALA LEU ILE GLY TYR ASP VAL THR ASP VAL SER ASN VAL SEQRES 3 A 966 HIS ASP ASP GLU LEU GLU PHE THR ARG ARG GLY LEU VAL SEQRES 4 A 966 THR PRO ARG MET ALA GLU VAL ALA SER ARG ASP PRO LYS SEQRES 5 A 966 LEU TYR ALA MET HIS PRO TRP VAL THR SER LYS PRO LEU SEQRES 6 A 966 PRO GLU TYR LEU TRP LYS LYS ILE ALA ASN ASN CYS ILE SEQRES 7 A 966 PHE ILE VAL ILE HIS ARG SER THR THR SER GLN THR ILE SEQRES 8 A 966 LYS VAL SER PRO ASP ASP THR PRO GLY ALA ILE LEU GLN SEQRES 9 A 966 SER PHE PHE THR LYS MET ALA LYS LYS LYS SER LEU MET SEQRES 10 A 966 ASP ILE PRO GLU SER GLN SER GLU GLN ASP PHE VAL LEU SEQRES 11 A 966 ARG VAL CYS GLY ARG ASP GLU TYR LEU VAL GLY GLU THR SEQRES 12 A 966 PRO ILE LYS ASN PHE GLN TRP VAL ARG HIS CYS LEU LYS SEQRES 13 A 966 ASN GLY GLU GLU ILE HIS VAL VAL LEU ASP THR PRO PRO SEQRES 14 A 966 ASP PRO ALA LEU ASP GLU VAL ARG LYS GLU GLU TRP PRO SEQRES 15 A 966 LEU VAL ASP ASP CYS THR GLY VAL THR GLY TYR HIS GLU SEQRES 16 A 966 GLN LEU THR ILE HIS GLY LYS ASP HIS GLU SER VAL PHE SEQRES 17 A 966 THR VAL SER LEU TRP ASP CYS ASP ARG LYS PHE ARG VAL SEQRES 18 A 966 LYS ILE ARG GLY ILE ASP ILE PRO VAL LEU PRO ARG ASN SEQRES 19 A 966 THR ASP LEU THR VAL PHE VAL GLU ALA ASN ILE GLN HIS SEQRES 20 A 966 GLY GLN GLN VAL LEU CYS GLN ARG ARG THR SER PRO LYS SEQRES 21 A 966 PRO PHE THR GLU GLU VAL LEU TRP ASN VAL TRP LEU GLU SEQRES 22 A 966 PHE SER ILE LYS ILE LYS ASP LEU PRO LYS GLY ALA LEU SEQRES 23 A 966 LEU ASN LEU GLN ILE TYR CYS GLY LYS ALA PRO ALA LEU SEQRES 24 A 966 SER SER LYS ALA SER ALA GLU SER PRO SER SER GLU SER SEQRES 25 A 966 LYS GLY LYS VAL GLN LEU LEU TYR TYR VAL ASN LEU LEU SEQRES 26 A 966 LEU ILE ASP HIS ARG PHE LEU LEU ARG ARG GLY GLU TYR SEQRES 27 A 966 VAL LEU HIS MET TRP GLN ILE SER GLY LYS GLY GLU ASP SEQRES 28 A 966 GLN GLY SER PHE ASN ALA ASP LYS LEU THR SER ALA THR SEQRES 29 A 966 ASN PRO ASP LYS GLU ASN SER MET SER ILE SER ILE LEU SEQRES 30 A 966 LEU ASP ASN TYR CYS HIS PRO ILE ALA LEU PRO LYS HIS SEQRES 31 A 966 GLN PRO THR PRO ASP PRO GLU GLY ASP ARG VAL ARG ALA SEQRES 32 A 966 GLU MET PRO ASN GLN LEU ARG LYS GLN LEU GLU ALA ILE SEQRES 33 A 966 ILE ALA THR ASP PRO LEU ASN PRO LEU THR ALA GLU ASP SEQRES 34 A 966 LYS GLU LEU LEU TRP HIS PHE ARG TYR GLU SER LEU LYS SEQRES 35 A 966 HIS PRO LYS ALA TYR PRO LYS LEU PHE SER SER VAL LYS SEQRES 36 A 966 TRP GLY GLN GLN GLU ILE VAL ALA LYS THR TYR GLN LEU SEQRES 37 A 966 LEU ALA ARG ARG GLU VAL TRP ASP GLN SER ALA LEU ASP SEQRES 38 A 966 VAL GLY LEU THR MET GLN LEU LEU ASP CYS ASN PHE SER SEQRES 39 A 966 ASP GLU ASN VAL ARG ALA ILE ALA VAL GLN LYS LEU GLU SEQRES 40 A 966 SER LEU GLU ASP ASP ASP VAL LEU HIS TYR LEU LEU GLN SEQRES 41 A 966 LEU VAL GLN ALA VAL LYS PHE GLU PRO TYR HIS ASP SER SEQRES 42 A 966 ALA LEU ALA ARG PHE LEU LEU LYS ARG GLY LEU ARG ASN SEQRES 43 A 966 LYS ARG ILE GLY HIS PHE LEU PHE TRP PHE LEU ARG SER SEQRES 44 A 966 GLU ILE ALA GLN SER ARG HIS TYR GLN GLN ARG PHE ALA SEQRES 45 A 966 VAL ILE LEU GLU ALA TYR LEU ARG GLY CYS GLY THR ALA SEQRES 46 A 966 MET LEU HIS ASP PHE THR GLN GLN VAL GLN VAL ILE GLU SEQRES 47 A 966 MET LEU GLN LYS VAL THR LEU ASP ILE LYS SER LEU SER SEQRES 48 A 966 ALA GLU LYS TYR ASP VAL SER SER GLN VAL ILE SER GLN SEQRES 49 A 966 LEU LYS GLN LYS LEU GLU ASN LEU GLN ASN SER GLN LEU SEQRES 50 A 966 PRO GLU SER PHE ARG VAL PRO TYR ASP PRO GLY LEU LYS SEQRES 51 A 966 ALA GLY ALA LEU ALA ILE GLU LYS CYS THR VAL MET ALA SEQRES 52 A 966 SER LYS LYS LYS PRO LEU TRP LEU GLU PHE LYS CYS ALA SEQRES 53 A 966 ASP PRO THR ALA LEU SER ASN GLU THR ILE GLY ILE ILE SEQRES 54 A 966 PHE LYS HIS GLY ASP ASP LEU ARG GLN ASP MET LEU ILE SEQRES 55 A 966 LEU GLN ILE LEU ARG ILE MET GLU SER ILE TRP GLU THR SEQRES 56 A 966 GLU SER LEU ASP LEU CYS LEU LEU PRO TYR GLY CYS ILE SEQRES 57 A 966 SER THR GLY ASP LYS ILE GLY MET ILE GLU ILE VAL LYS SEQRES 58 A 966 ASP ALA THR THR ILE ALA LYS ILE GLN GLN SER THR VAL SEQRES 59 A 966 GLY ASN THR GLY ALA PHE LYS ASP GLU VAL LEU ASN HIS SEQRES 60 A 966 TRP LEU LYS GLU LYS SER PRO THR GLU GLU LYS PHE GLN SEQRES 61 A 966 ALA ALA VAL GLU ARG PHE VAL TYR SER CYS ALA GLY TYR SEQRES 62 A 966 CYS VAL ALA THR PHE VAL LEU GLY ILE GLY ASP ARG HIS SEQRES 63 A 966 ASN ASP ASN ILE MET ILE THR GLU THR GLY ASN LEU PHE SEQRES 64 A 966 HIS ILE ASP PHE GLY HIS ILE LEU GLY ASN TYR LYS SER SEQRES 65 A 966 PHE LEU GLY ILE ASN LYS GLU ARG VAL PRO PHE VAL LEU SEQRES 66 A 966 THR PRO ASP PHE LEU PHE VAL MET GLY THR SER GLY LYS SEQRES 67 A 966 LYS THR SER PRO HIS PHE GLN LYS PHE GLN ASP ILE CYS SEQRES 68 A 966 VAL LYS ALA TYR LEU ALA LEU ARG HIS HIS THR ASN LEU SEQRES 69 A 966 LEU ILE ILE LEU PHE SER MET MET LEU MET THR GLY MET SEQRES 70 A 966 PRO GLN LEU THR SER LYS GLU ASP ILE GLU TYR ILE ARG SEQRES 71 A 966 ASP ALA LEU THR VAL GLY LYS ASN GLU GLU ASP ALA LYS SEQRES 72 A 966 LYS TYR PHE LEU ASP GLN ILE GLU VAL CYS ARG ASP LYS SEQRES 73 A 966 GLY TRP THR VAL GLN PHE ASN TRP PHE LEU HIS LEU VAL SEQRES 74 A 966 LEU GLY ILE LYS GLN GLY GLU LYS HIS SER ALA HIS HIS SEQRES 75 A 966 HIS HIS HIS HIS HET 0SC A1201 37 HETNAM 0SC 2-(1-{[2-(5-FLUORO-1H-INDOL-4-YL)-4-(MORPHOLIN-4-YL) HETNAM 2 0SC PYRIDO[3,2-D]PYRIMIDIN-6-YL]METHYL}PIPERIDIN-4-YL) HETNAM 3 0SC PROPAN-2-OL FORMUL 2 0SC C28 H33 F N6 O2 FORMUL 3 HOH *91(H2 O) HELIX 1 1 SER A 144 GLY A 159 1 16 HELIX 2 2 ASP A 171 LEU A 180 1 10 HELIX 3 3 LEU A 180 ARG A 191 1 12 HELIX 4 4 ASP A 192 HIS A 199 1 8 HELIX 5 5 PRO A 208 LYS A 213 1 6 HELIX 6 6 THR A 240 LYS A 251 1 12 HELIX 7 7 PRO A 286 ASN A 289 5 4 HELIX 8 8 PHE A 290 GLY A 300 1 11 HELIX 9 9 ASP A 312 GLU A 317 5 6 HELIX 10 10 LYS A 421 LEU A 423 5 3 HELIX 11 11 ASN A 498 THR A 503 5 6 HELIX 12 12 PRO A 548 THR A 561 1 14 HELIX 13 13 THR A 568 PHE A 578 1 11 HELIX 14 14 PHE A 578 LEU A 583 1 6 HELIX 15 15 LYS A 584 LYS A 587 5 4 HELIX 16 16 ALA A 588 SER A 594 1 7 HELIX 17 17 GLN A 600 ARG A 613 1 14 HELIX 18 18 ARG A 614 SER A 620 1 7 HELIX 19 19 ASP A 623 LEU A 630 1 8 HELIX 20 20 ASP A 637 GLU A 649 1 13 HELIX 21 21 GLU A 652 ALA A 666 1 15 HELIX 22 22 VAL A 667 GLU A 670 5 4 HELIX 23 23 SER A 675 ASN A 688 1 14 HELIX 24 24 ASN A 688 SER A 706 1 19 HELIX 25 25 TYR A 709 ARG A 722 1 14 HELIX 26 26 GLY A 725 LYS A 750 1 26 HELIX 27 27 SER A 760 ASN A 776 1 17 HELIX 28 28 LEU A 838 GLU A 858 1 21 HELIX 29 29 ILE A 888 VAL A 896 1 9 HELIX 30 30 GLU A 905 SER A 915 1 11 HELIX 31 31 THR A 917 GLY A 943 1 27 HELIX 32 32 THR A 988 GLY A 996 1 9 HELIX 33 33 SER A 1003 HIS A 1022 1 20 HELIX 34 34 HIS A 1023 GLY A 1038 1 16 HELIX 35 35 GLU A 1049 LEU A 1055 1 7 HELIX 36 36 ASN A 1060 GLY A 1079 1 20 HELIX 37 37 TRP A 1080 LEU A 1092 1 13 SHEET 1 A 3 SER A 230 VAL A 235 0 SHEET 2 A 3 ILE A 220 HIS A 225 -1 N ILE A 220 O VAL A 235 SHEET 3 A 3 ILE A 303 VAL A 306 1 O VAL A 305 N VAL A 223 SHEET 1 B 4 GLU A 407 LYS A 419 0 SHEET 2 B 4 LYS A 360 ASP A 369 -1 N PHE A 361 O PHE A 416 SHEET 3 B 4 SER A 515 LEU A 520 -1 O SER A 515 N ASP A 369 SHEET 4 B 4 GLY A 478 HIS A 483 -1 N LEU A 482 O ILE A 516 SHEET 1 C 3 GLN A 392 ARG A 398 0 SHEET 2 C 3 THR A 380 HIS A 389 -1 N ILE A 387 O LEU A 394 SHEET 3 C 3 LYS A 402 PRO A 403 -1 O LYS A 402 N VAL A 381 SHEET 1 D 5 GLN A 392 ARG A 398 0 SHEET 2 D 5 THR A 380 HIS A 389 -1 N ILE A 387 O LEU A 394 SHEET 3 D 5 LEU A 428 TYR A 434 -1 O ASN A 430 N ASN A 386 SHEET 4 D 5 TYR A 462 LEU A 467 -1 O LEU A 466 N LEU A 429 SHEET 5 D 5 TRP A 485 GLN A 486 -1 O TRP A 485 N TYR A 463 SHEET 1 E 4 PHE A 783 VAL A 785 0 SHEET 2 E 4 ASP A 788 LEU A 796 -1 O ALA A 793 N PHE A 783 SHEET 3 E 4 LEU A 811 CYS A 817 -1 O LYS A 816 N ALA A 795 SHEET 4 E 4 THR A 802 VAL A 803 -1 N THR A 802 O TRP A 812 SHEET 1 F 6 PHE A 783 VAL A 785 0 SHEET 2 F 6 ASP A 788 LEU A 796 -1 O ALA A 793 N PHE A 783 SHEET 3 F 6 LEU A 811 CYS A 817 -1 O LYS A 816 N ALA A 795 SHEET 4 F 6 ILE A 828 HIS A 834 -1 O ILE A 828 N PHE A 815 SHEET 5 F 6 ILE A 876 GLU A 880 -1 O ILE A 879 N ILE A 831 SHEET 6 F 6 CYS A 869 GLY A 873 -1 N ILE A 870 O MET A 878 SHEET 1 G 3 ALA A 885 THR A 887 0 SHEET 2 G 3 ILE A 952 THR A 955 -1 O ILE A 954 N THR A 886 SHEET 3 G 3 LEU A 960 HIS A 962 -1 O PHE A 961 N MET A 953 CISPEP 1 ARG A 375 ASN A 376 0 -13.04 CISPEP 2 ASN A 376 THR A 377 0 -14.27 CISPEP 3 ASN A 776 SER A 777 0 -8.74 CISPEP 4 SER A 777 GLN A 778 0 -8.06 CISPEP 5 THR A 899 GLY A 900 0 23.90 SITE 1 AC1 13 MET A 804 TRP A 812 ILE A 831 LYS A 833 SITE 2 AC1 13 ASP A 841 TYR A 867 ILE A 879 GLU A 880 SITE 3 AC1 13 ILE A 881 VAL A 882 MET A 953 ILE A 963 SITE 4 AC1 13 ASP A 964 CRYST1 141.200 67.120 104.770 90.00 97.03 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007082 0.000000 0.000873 0.00000 SCALE2 0.000000 0.014899 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009617 0.00000