HEADER TRANSFERASE, SIGNALING PROTEIN 04-MAY-12 4F0F TITLE CRYSTAL STRUCTURE OF THE ROCO4 KINASE DOMAIN BOUND TO APPCP FROM D. TITLE 2 DISCOIDEUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE ROCO4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ROCO4 KINASE DOMAIN, UNP RESIDUES 1019-1292; COMPND 5 SYNONYM: RAS OF COMPLEX PROTEINS AND C-TERMINAL OF ROC 4; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DICTYOSTELIUM DISCOIDEUM; SOURCE 3 ORGANISM_COMMON: SLIME MOLD; SOURCE 4 ORGANISM_TAXID: 44689; SOURCE 5 STRAIN: AX3; SOURCE 6 GENE: DDB_G0288251, ROCO4; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PGEX4T1 NTEV KEYWDS PROTEIN KINASE, LRRK2, ROCO, KINASE, ATP-BINDING, NUCLEOTIDE-BINDING, KEYWDS 2 SERINE/THREONINE-PROTEIN KINASE, TRANSFERASE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.K.GILSBACH,I.R.VETTER,A.WITTINGHOFER,A.KORTHOLT REVDAT 3 13-SEP-23 4F0F 1 REMARK SEQADV REVDAT 2 11-JUL-12 4F0F 1 JRNL REVDAT 1 27-JUN-12 4F0F 0 JRNL AUTH B.K.GILSBACH,F.Y.HO,I.R.VETTER,P.J.VAN HAASTERT, JRNL AUTH 2 A.WITTINGHOFER,A.KORTHOLT JRNL TITL ROCO KINASE STRUCTURES GIVE INSIGHTS INTO THE MECHANISM OF JRNL TITL 2 PARKINSON DISEASE-RELATED LEUCINE-RICH-REPEAT KINASE 2 JRNL TITL 3 MUTATIONS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 10322 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22689969 JRNL DOI 10.1073/PNAS.1203223109 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0093 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 29252 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1539 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1796 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2208 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 211 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.130 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.076 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.378 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2307 ; 0.027 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3129 ; 2.246 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 279 ; 7.807 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;38.733 ;24.571 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 413 ;17.050 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;16.996 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 339 ; 0.220 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1733 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4F0F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000072297. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97780 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30175 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 19.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3DTC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS- TRIS PH, 200 MM NA/K REMARK 280 TARTRATE; 11% PEG 3350, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 169.73000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 21.36000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 21.36000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 254.59500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 21.36000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 21.36000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 84.86500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 21.36000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 21.36000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 254.59500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 21.36000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 21.36000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 84.86500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 169.73000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1574 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1006 REMARK 465 ALA A 1007 REMARK 465 MET A 1008 REMARK 465 GLY A 1009 REMARK 465 GLY A 1010 REMARK 465 SER A 1011 REMARK 465 GLU A 1012 REMARK 465 PHE A 1013 REMARK 465 PRO A 1014 REMARK 465 LYS A 1015 REMARK 465 SER A 1016 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A1017 CG CD NE CZ NH1 NH2 REMARK 470 LEU A1018 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB ALA A 1205 OE1 GLU A 1207 1.39 REMARK 500 N LYS A 1071 O HOH A 1573 1.62 REMARK 500 OE1 GLU A 1167 O HOH A 1610 1.85 REMARK 500 O ASN A 1194 O HOH A 1541 1.87 REMARK 500 CD ARG A 1263 O HOH A 1603 2.11 REMARK 500 O HOH A 1487 O HOH A 1569 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 1061 O GLY A 1064 7465 1.82 REMARK 500 OG1 THR A 1066 O HOH A 1522 7465 1.95 REMARK 500 CD2 PHE A 1072 CE2 PHE A 1072 7465 2.12 REMARK 500 CD2 PHE A 1072 CD2 PHE A 1072 7465 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A1236 CD1 TYR A1236 CE1 0.108 REMARK 500 ARG A1265 CD ARG A1265 NE -0.105 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A1019 C - N - CA ANGL. DEV. = 12.1 DEGREES REMARK 500 ALA A1022 CB - CA - C ANGL. DEV. = 20.1 DEGREES REMARK 500 ASN A1024 N - CA - CB ANGL. DEV. = -16.1 DEGREES REMARK 500 GLY A1033 N - CA - C ANGL. DEV. = 16.2 DEGREES REMARK 500 SER A1050 N - CA - CB ANGL. DEV. = -10.4 DEGREES REMARK 500 ALA A1053 N - CA - CB ANGL. DEV. = -10.8 DEGREES REMARK 500 ALA A1053 N - CA - C ANGL. DEV. = -19.6 DEGREES REMARK 500 ILE A1069 CG1 - CB - CG2 ANGL. DEV. = -19.7 DEGREES REMARK 500 LYS A1071 CB - CA - C ANGL. DEV. = -16.2 DEGREES REMARK 500 ASP A1166 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A1177 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 GLY A1193 N - CA - C ANGL. DEV. = 20.6 DEGREES REMARK 500 PHE A1195 N - CA - CB ANGL. DEV. = 20.6 DEGREES REMARK 500 ARG A1265 NE - CZ - NH1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG A1265 NE - CZ - NH2 ANGL. DEV. = -9.9 DEGREES REMARK 500 LEU A1292 CB - CG - CD1 ANGL. DEV. = 12.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A1032 28.64 -150.06 REMARK 500 LYS A1071 -11.11 79.39 REMARK 500 ASP A1154 35.32 -140.39 REMARK 500 ASP A1177 70.89 62.24 REMARK 500 THR A1211 -157.21 -132.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 1022 ASP A 1023 149.90 REMARK 500 VAL A 1051 VAL A 1052 -149.61 REMARK 500 GLU A 1070 LYS A 1071 -43.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A1265 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACP A 1301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4F0G RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN THE IN-ACTIVE CONFORMATION REMARK 900 RELATED ID: 4F1M RELATED DB: PDB REMARK 900 THE G1179S MUTANT PROTEIN BOUND TO APPCP IN THE ACTIVE CONFORMATION REMARK 900 RELATED ID: 4F1O RELATED DB: PDB REMARK 900 THE L1178T MUTANT PROTEIN BOUND TO APPCP IN THE ACTIVE CONFORMATION REMARK 900 RELATED ID: 4F1T RELATED DB: PDB REMARK 900 THE DAME PROTEIN BOUND TO THE ROCK INHIBITOR H1152 DBREF 4F0F A 1019 1292 UNP Q6XHB2 ROCO4_DICDI 1018 1291 SEQADV 4F0F GLY A 1006 UNP Q6XHB2 EXPRESSION TAG SEQADV 4F0F ALA A 1007 UNP Q6XHB2 EXPRESSION TAG SEQADV 4F0F MET A 1008 UNP Q6XHB2 EXPRESSION TAG SEQADV 4F0F GLY A 1009 UNP Q6XHB2 EXPRESSION TAG SEQADV 4F0F GLY A 1010 UNP Q6XHB2 EXPRESSION TAG SEQADV 4F0F SER A 1011 UNP Q6XHB2 EXPRESSION TAG SEQADV 4F0F GLU A 1012 UNP Q6XHB2 EXPRESSION TAG SEQADV 4F0F PHE A 1013 UNP Q6XHB2 EXPRESSION TAG SEQADV 4F0F PRO A 1014 UNP Q6XHB2 EXPRESSION TAG SEQADV 4F0F LYS A 1015 UNP Q6XHB2 EXPRESSION TAG SEQADV 4F0F SER A 1016 UNP Q6XHB2 EXPRESSION TAG SEQADV 4F0F ARG A 1017 UNP Q6XHB2 EXPRESSION TAG SEQADV 4F0F LEU A 1018 UNP Q6XHB2 EXPRESSION TAG SEQRES 1 A 287 GLY ALA MET GLY GLY SER GLU PHE PRO LYS SER ARG LEU SEQRES 2 A 287 PRO THR LEU ALA ASP ASN GLU ILE GLU TYR GLU LYS GLN SEQRES 3 A 287 ILE GLY LYS GLY GLY PHE GLY LEU VAL HIS LYS GLY ARG SEQRES 4 A 287 LEU VAL LYS ASP LYS SER VAL VAL ALA ILE LYS SER LEU SEQRES 5 A 287 ILE LEU GLY ASP SER GLU GLY GLU THR GLU MET ILE GLU SEQRES 6 A 287 LYS PHE GLN GLU PHE GLN ARG GLU VAL PHE ILE MET SER SEQRES 7 A 287 ASN LEU ASN HIS PRO ASN ILE VAL LYS LEU TYR GLY LEU SEQRES 8 A 287 MET HIS ASN PRO PRO ARG MET VAL MET GLU PHE VAL PRO SEQRES 9 A 287 CYS GLY ASP LEU TYR HIS ARG LEU LEU ASP LYS ALA HIS SEQRES 10 A 287 PRO ILE LYS TRP SER VAL LYS LEU ARG LEU MET LEU ASP SEQRES 11 A 287 ILE ALA LEU GLY ILE GLU TYR MET GLN ASN GLN ASN PRO SEQRES 12 A 287 PRO ILE VAL HIS ARG ASP LEU ARG SER PRO ASN ILE PHE SEQRES 13 A 287 LEU GLN SER LEU ASP GLU ASN ALA PRO VAL CYS ALA LYS SEQRES 14 A 287 VAL ALA ASP PHE GLY LEU SER GLN GLN SER VAL HIS SER SEQRES 15 A 287 VAL SER GLY LEU LEU GLY ASN PHE GLN TRP MET ALA PRO SEQRES 16 A 287 GLU THR ILE GLY ALA GLU GLU GLU SER TYR THR GLU LYS SEQRES 17 A 287 ALA ASP THR TYR SER PHE ALA MET ILE LEU TYR THR ILE SEQRES 18 A 287 LEU THR GLY GLU GLY PRO PHE ASP GLU TYR SER TYR GLY SEQRES 19 A 287 LYS ILE LYS PHE ILE ASN MET ILE ARG GLU GLU GLY LEU SEQRES 20 A 287 ARG PRO THR ILE PRO GLU ASP CYS PRO PRO ARG LEU ARG SEQRES 21 A 287 ASN VAL ILE GLU LEU CYS TRP SER GLY ASP PRO LYS LYS SEQRES 22 A 287 ARG PRO HIS PHE SER TYR ILE VAL LYS GLU LEU SER GLU SEQRES 23 A 287 LEU HET ACP A1301 31 HETNAM ACP PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER HETSYN ACP ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE FORMUL 2 ACP C11 H18 N5 O12 P3 FORMUL 3 HOH *211(H2 O) HELIX 1 1 GLU A 1065 GLU A 1070 1 6 HELIX 2 2 PHE A 1072 SER A 1083 1 12 HELIX 3 3 ASP A 1112 ASP A 1119 1 8 HELIX 4 4 LYS A 1125 ASN A 1145 1 21 HELIX 5 5 ARG A 1156 PRO A 1158 5 3 HELIX 6 6 ALA A 1199 ILE A 1203 5 5 HELIX 7 7 THR A 1211 GLY A 1229 1 19 HELIX 8 8 GLY A 1239 GLU A 1250 1 12 HELIX 9 9 PRO A 1261 TRP A 1272 1 12 HELIX 10 10 ASP A 1275 ARG A 1279 5 5 HELIX 11 11 HIS A 1281 GLU A 1291 1 11 SHEET 1 A 5 ILE A1026 GLN A1031 0 SHEET 2 A 5 VAL A1040 LEU A1045 -1 O LYS A1042 N LYS A1030 SHEET 3 A 5 VAL A1051 SER A1056 -1 O ILE A1054 N HIS A1041 SHEET 4 A 5 ARG A1102 GLU A1106 -1 O MET A1105 N ALA A1053 SHEET 5 A 5 LEU A1093 MET A1097 -1 N TYR A1094 O VAL A1104 SHEET 1 B 2 ILE A1160 LEU A1162 0 SHEET 2 B 2 ALA A1173 VAL A1175 -1 O LYS A1174 N PHE A1161 SHEET 1 C 2 VAL A1188 SER A1189 0 SHEET 2 C 2 SER A1209 TYR A1210 -1 O TYR A1210 N VAL A1188 CISPEP 1 ASN A 1099 PRO A 1100 0 4.11 CISPEP 2 ASN A 1147 PRO A 1148 0 -2.92 SITE 1 AC1 12 ILE A1032 LYS A1034 GLY A1035 GLU A1106 SITE 2 AC1 12 PHE A1107 VAL A1108 ARG A1156 PHE A1161 SITE 3 AC1 12 ASP A1177 HOH A1542 HOH A1555 HOH A1561 CRYST1 42.720 42.720 339.460 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023408 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023408 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002946 0.00000