HEADER LYASE 04-MAY-12 4F0K TITLE UNACTIVATED RUBISCO WITH MAGNESIUM AND CARBON DIOXIDE BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RUBISCO LARGE SUBUNIT; COMPND 5 EC: 4.1.1.39; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: RUBISCO SMALL SUBUNIT; COMPND 10 EC: 4.1.1.39 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALDIERIA SULPHURARIA; SOURCE 3 ORGANISM_COMMON: RED ALGA; SOURCE 4 ORGANISM_TAXID: 130081; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: GALDIERIA SULPHURARIA; SOURCE 7 ORGANISM_COMMON: RED ALGA; SOURCE 8 ORGANISM_TAXID: 130081 KEYWDS ALPHA BETA DOMAIN, CATALYTIC DOMAIN TIM BARREL, KEYWDS 2 CARBOXYLASE/OXYGENASE, NITROSYLATION, CHLOROPLAST, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR B.STEC REVDAT 3 13-SEP-23 4F0K 1 REMARK LINK REVDAT 2 12-DEC-12 4F0K 1 JRNL REVDAT 1 14-NOV-12 4F0K 0 JRNL AUTH B.STEC JRNL TITL STRUCTURAL MECHANISM OF RUBISCO ACTIVATION BY CARBAMYLATION JRNL TITL 2 OF THE ACTIVE SITE LYSINE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 18785 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 23112176 JRNL DOI 10.1073/PNAS.1210754109 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 96.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 33570 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1779 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2470 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.3830 REMARK 3 BIN FREE R VALUE SET COUNT : 130 REMARK 3 BIN FREE R VALUE : 0.4380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4658 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 405 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.45000 REMARK 3 B22 (A**2) : -0.45000 REMARK 3 B33 (A**2) : 0.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.232 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.197 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.142 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.608 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4790 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6474 ; 1.842 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 586 ; 6.767 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 220 ;36.065 ;23.682 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 824 ;15.827 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;15.701 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 702 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3619 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2917 ; 2.553 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4689 ; 3.875 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1873 ; 3.066 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1785 ; 4.245 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4F0K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000072302. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-AUG-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : CONFOCAL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35349 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 96.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.61100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3RUB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M POTASSIUM PHOSPHATE, 26% REMARK 280 AMMONIUM SULFATE, PH 7.5, VAPOR DIFFUSION, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 68.06800 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 68.06800 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 60.64350 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 68.06800 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 68.06800 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 60.64350 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 68.06800 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 68.06800 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 60.64350 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 68.06800 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 68.06800 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 60.64350 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 68.06800 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 68.06800 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 60.64350 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 68.06800 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 68.06800 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 60.64350 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 68.06800 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 68.06800 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 60.64350 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 68.06800 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 68.06800 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 60.64350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXADECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXADECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 110510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 125980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -717.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 136.13600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 136.13600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 136.13600 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 136.13600 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 136.13600 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 136.13600 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 136.13600 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 136.13600 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL B 901 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1081 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1126 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 SER A 4 REMARK 465 LEU A 5 REMARK 465 GLU A 6 REMARK 465 GLU A 7 REMARK 465 LYS A 8 REMARK 465 SER A 9 REMARK 465 VAL A 10 REMARK 465 GLN A 11 REMARK 465 GLU A 12 REMARK 465 ARG A 13 REMARK 465 THR A 14 REMARK 465 ARG A 15 REMARK 465 ILE A 16 REMARK 465 LYS A 17 REMARK 465 ASN A 18 REMARK 465 SER A 19 REMARK 465 ARG A 20 REMARK 465 TYR A 21 REMARK 465 GLU A 22 REMARK 465 SER A 23 REMARK 465 GLY A 24 REMARK 465 VAL A 25 REMARK 465 ILE A 26 REMARK 465 PHE A 475 REMARK 465 ASN A 476 REMARK 465 TYR A 477 REMARK 465 THR A 478 REMARK 465 SER A 479 REMARK 465 THR A 480 REMARK 465 ASP A 481 REMARK 465 THR A 482 REMARK 465 SER A 483 REMARK 465 ASP A 484 REMARK 465 PHE A 485 REMARK 465 VAL A 486 REMARK 465 GLU A 487 REMARK 465 THR A 488 REMARK 465 PRO A 489 REMARK 465 THR A 490 REMARK 465 ALA A 491 REMARK 465 ASN A 492 REMARK 465 ILE A 493 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN B 614 O HOH B 1123 1.49 REMARK 500 O HOH B 1051 O HOH B 1106 1.89 REMARK 500 O HOH A 1140 O HOH A 1193 1.96 REMARK 500 O HOH B 1104 O HOH B 1109 1.98 REMARK 500 O HOH A 1163 O HOH A 1177 1.98 REMARK 500 OE2 GLU B 549 O HOH B 1039 2.08 REMARK 500 O HOH B 1068 O HOH B 1142 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O VAL A 77 O HOH A 1222 6565 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 517 CG GLU B 517 CD 0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 103 C - N - CA ANGL. DEV. = 11.2 DEGREES REMARK 500 ARG A 262 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 351 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 351 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 544 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 71 -31.59 -135.58 REMARK 500 ALA A 73 52.67 -116.74 REMARK 500 TRP A 75 57.07 -146.24 REMARK 500 THR A 76 -164.40 -175.90 REMARK 500 ASN A 102 81.59 -165.01 REMARK 500 PRO A 103 -35.12 -36.21 REMARK 500 PHE A 134 -154.89 -83.47 REMARK 500 ASN A 216 -88.06 -127.29 REMARK 500 MET A 221 122.96 -174.53 REMARK 500 SER A 310 -92.00 -90.27 REMARK 500 ARG A 311 38.12 -66.78 REMARK 500 ASN A 365 106.61 -165.66 REMARK 500 ARG A 380 164.39 -48.98 REMARK 500 THR A 414 -58.30 -120.06 REMARK 500 ILE A 473 -74.70 -49.89 REMARK 500 ASN B 577 40.59 -105.87 REMARK 500 GLU B 592 62.49 37.59 REMARK 500 ASP B 616 -143.95 -120.86 REMARK 500 SER B 618 -119.38 50.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1001 O REMARK 620 2 HOH A1002 O 88.9 REMARK 620 3 HOH A1003 O 84.9 78.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO2 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 903 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4F0H RELATED DB: PDB REMARK 900 RELATED ID: 4F0M RELATED DB: PDB DBREF 4F0K A 1 493 UNP P23755 RBL_GALSU 1 493 DBREF 4F0K B 501 638 UNP P23756 RBS_GALSU 1 138 SEQRES 1 A 493 MET SER GLN SER LEU GLU GLU LYS SER VAL GLN GLU ARG SEQRES 2 A 493 THR ARG ILE LYS ASN SER ARG TYR GLU SER GLY VAL ILE SEQRES 3 A 493 PRO TYR ALA LYS MET GLY TYR TRP ASN PRO ASP TYR GLN SEQRES 4 A 493 VAL LYS ASP THR ASP VAL LEU ALA LEU PHE ARG VAL THR SEQRES 5 A 493 PRO GLN PRO GLY VAL ASP PRO ILE GLU ALA ALA ALA ALA SEQRES 6 A 493 VAL ALA GLY GLU SER SER THR ALA THR TRP THR VAL VAL SEQRES 7 A 493 TRP THR ASP LEU LEU THR ALA ALA ASP LEU TYR ARG ALA SEQRES 8 A 493 LYS ALA TYR LYS VAL ASP GLN VAL PRO ASN ASN PRO GLU SEQRES 9 A 493 GLN TYR PHE ALA TYR ILE ALA TYR GLU LEU ASP LEU PHE SEQRES 10 A 493 GLU GLU GLY SER ILE ALA ASN LEU THR ALA SER ILE ILE SEQRES 11 A 493 GLY ASN VAL PHE GLY PHE LYS ALA VAL LYS ALA LEU ARG SEQRES 12 A 493 LEU GLU ASP MET ARG LEU PRO PHE ALA TYR ILE LYS THR SEQRES 13 A 493 PHE GLN GLY PRO ALA THR GLY VAL ILE LEU GLU ARG GLU SEQRES 14 A 493 ARG LEU ASP LYS PHE GLY ARG PRO LEU LEU GLY SNC THR SEQRES 15 A 493 THR LYS PRO LYS LEU GLY LEU SER GLY LYS ASN TYR GLY SEQRES 16 A 493 ARG VAL VAL TYR GLU ALA LEU LYS GLY GLY LEU ASP PHE SEQRES 17 A 493 VAL LYS ASP ASP GLU ASN ILE ASN SER GLN PRO PHE MET SEQRES 18 A 493 ARG TRP ARG GLU ARG TYR LEU PHE VAL MET GLU ALA VAL SEQRES 19 A 493 ASN LYS ALA ALA ALA ALA THR GLY GLU VAL LYS GLY HIS SEQRES 20 A 493 TYR LEU ASN VAL THR ALA ALA THR MET GLU GLU MET TYR SEQRES 21 A 493 ALA ARG ALA GLN LEU ALA LYS GLU LEU GLY SER VAL ILE SEQRES 22 A 493 ILE MET ILE ASP LEU VAL ILE GLY TYR THR ALA ILE GLN SEQRES 23 A 493 THR MET ALA LYS TRP ALA ARG ASP ASN ASP MET ILE LEU SEQRES 24 A 493 HIS LEU HIS ARG ALA GLY ASN SER THR TYR SER ARG GLN SEQRES 25 A 493 LYS ASN HIS GLY MET ASN PHE ARG VAL ILE CYS LYS TRP SEQRES 26 A 493 MET ARG MET ALA GLY VAL ASP HIS ILE HIS ALA GLY THR SEQRES 27 A 493 VAL VAL GLY LYS LEU GLU GLY ASP PRO ILE ILE THR ARG SEQRES 28 A 493 GLY PHE TYR LYS THR LEU LEU LEU PRO LYS LEU GLU ARG SEQRES 29 A 493 ASN LEU GLN GLU GLY LEU PHE PHE ASP MET ASP TRP ALA SEQRES 30 A 493 SER LEU ARG LYS VAL MET PRO VAL ALA SER GLY GLY ILE SEQRES 31 A 493 HIS ALA GLY GLN MET HIS GLN LEU ILE HIS TYR LEU GLY SEQRES 32 A 493 GLU ASP VAL VAL LEU GLN PHE GLY GLY GLY THR ILE GLY SEQRES 33 A 493 HIS PRO ASP GLY ILE GLN SER GLY ALA THR ALA ASN ARG SEQRES 34 A 493 VAL ALA LEU GLU ALA MET ILE LEU ALA ARG ASN GLU ASN SEQRES 35 A 493 ARG ASP PHE LEU THR GLU GLY PRO GLU ILE LEU ARG GLU SEQRES 36 A 493 ALA ALA LYS ASN SNC GLY ALA LEU ARG THR ALA LEU ASP SEQRES 37 A 493 LEU TRP LYS ASP ILE THR PHE ASN TYR THR SER THR ASP SEQRES 38 A 493 THR SER ASP PHE VAL GLU THR PRO THR ALA ASN ILE SEQRES 1 B 138 MET ARG ILE THR GLN GLY THR PHE SER PHE LEU PRO ASP SEQRES 2 B 138 LEU THR ASP GLU GLN ILE LYS LYS GLN ILE ASP TYR MET SEQRES 3 B 138 ILE SER LYS LYS LEU ALA ILE GLY ILE GLU TYR THR ASN SEQRES 4 B 138 ASP ILE HIS PRO ARG ASN SER PHE TRP GLU MET TRP GLY SEQRES 5 B 138 LEU PRO LEU PHE GLU VAL THR ASP PRO ALA PRO VAL LEU SEQRES 6 B 138 PHE GLU ILE ASN ALA CYS ARG LYS ALA LYS SER ASN PHE SEQRES 7 B 138 TYR ILE LYS VAL VAL GLY PHE SER SER GLU ARG GLY ILE SEQRES 8 B 138 GLU SER THR ILE ILE SER PHE ILE VAL ASN ARG PRO LYS SEQRES 9 B 138 HIS GLU PRO GLY PHE ASN LEU ILE ARG GLN GLU ASP LYS SEQRES 10 B 138 SER ARG SER ILE LYS TYR SER ILE GLN ALA TYR GLU THR SEQRES 11 B 138 TYR LYS PRO GLU ASP GLN ARG TYR MODRES 4F0K SNC A 181 CYS S-NITROSO-CYSTEINE MODRES 4F0K SNC A 460 CYS S-NITROSO-CYSTEINE HET SNC A 181 8 HET SNC A 460 8 HET MG A 501 1 HET CO2 A 502 3 HET GOL A 503 6 HET CL B 901 1 HET GOL B 902 6 HET GOL B 903 6 HETNAM SNC S-NITROSO-CYSTEINE HETNAM MG MAGNESIUM ION HETNAM CO2 CARBON DIOXIDE HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 SNC 2(C3 H6 N2 O3 S) FORMUL 3 MG MG 2+ FORMUL 4 CO2 C O2 FORMUL 5 GOL 3(C3 H8 O3) FORMUL 6 CL CL 1- FORMUL 9 HOH *405(H2 O) HELIX 1 1 ASP A 58 SER A 70 1 13 HELIX 2 2 VAL A 78 THR A 84 5 7 HELIX 3 3 ALA A 85 ARG A 90 5 6 HELIX 4 4 GLU A 113 PHE A 117 5 5 HELIX 5 5 SER A 121 ILE A 130 1 10 HELIX 6 6 PRO A 150 LYS A 155 1 6 HELIX 7 7 GLY A 163 ASP A 172 1 10 HELIX 8 8 SER A 190 GLY A 205 1 16 HELIX 9 9 ARG A 222 GLY A 242 1 21 HELIX 10 10 THR A 255 GLY A 270 1 16 HELIX 11 11 GLY A 281 ASN A 295 1 15 HELIX 12 12 ASN A 318 GLY A 330 1 13 HELIX 13 13 ASP A 346 LEU A 359 1 14 HELIX 14 14 ASN A 365 GLY A 369 5 5 HELIX 15 15 HIS A 391 GLY A 393 5 3 HELIX 16 16 GLN A 394 GLY A 403 1 10 HELIX 17 17 GLY A 411 GLY A 416 1 6 HELIX 18 18 GLY A 420 GLU A 441 1 22 HELIX 19 19 ASP A 444 ASN A 459 1 16 HELIX 20 20 SNC A 460 TRP A 470 1 11 HELIX 21 21 THR B 515 LYS B 529 1 15 HELIX 22 22 PRO B 561 LYS B 575 1 15 HELIX 23 23 GLU B 629 LYS B 632 5 4 HELIX 24 24 PRO B 633 ARG B 637 5 5 SHEET 1 A 5 LYS A 92 GLN A 98 0 SHEET 2 A 5 TYR A 106 TYR A 112 -1 O ALA A 111 N LYS A 92 SHEET 3 A 5 VAL A 45 PRO A 53 -1 N VAL A 51 O TYR A 106 SHEET 4 A 5 VAL A 139 ARG A 148 -1 O ARG A 143 N ARG A 50 SHEET 5 A 5 GLY A 316 MET A 317 1 O GLY A 316 N LEU A 144 SHEET 1 B 8 LEU A 178 GLY A 180 0 SHEET 2 B 8 VAL A 407 GLN A 409 1 O LEU A 408 N LEU A 178 SHEET 3 B 8 MET A 383 SER A 387 1 N ALA A 386 O GLN A 409 SHEET 4 B 8 HIS A 333 HIS A 335 1 N ILE A 334 O MET A 383 SHEET 5 B 8 ILE A 298 HIS A 302 1 N LEU A 301 O HIS A 333 SHEET 6 B 8 ILE A 273 ASP A 277 1 N ILE A 276 O HIS A 302 SHEET 7 B 8 GLY A 246 ASN A 250 1 N LEU A 249 O MET A 275 SHEET 8 B 8 PHE A 208 LYS A 210 1 N VAL A 209 O TYR A 248 SHEET 1 C 2 LYS A 361 LEU A 362 0 SHEET 2 C 2 MET A 374 ASP A 375 -1 O MET A 374 N LEU A 362 SHEET 1 D 4 GLU B 549 MET B 550 0 SHEET 2 D 4 ALA B 532 THR B 538 -1 N TYR B 537 O GLU B 549 SHEET 3 D 4 TYR B 579 SER B 586 -1 O VAL B 583 N GLY B 534 SHEET 4 D 4 SER B 593 ASN B 601 -1 O ILE B 596 N GLY B 584 SHEET 1 E 2 PHE B 609 GLU B 615 0 SHEET 2 E 2 ILE B 621 ALA B 627 -1 O LYS B 622 N GLN B 614 LINK C GLY A 180 N SNC A 181 1555 1555 1.32 LINK C SNC A 181 N THR A 182 1555 1555 1.33 LINK C ASN A 459 N SNC A 460 1555 1555 1.33 LINK C SNC A 460 N GLY A 461 1555 1555 1.33 LINK MG MG A 501 O HOH A1001 1555 1555 1.77 LINK MG MG A 501 O HOH A1002 1555 1555 1.79 LINK MG MG A 501 O HOH A1003 1555 1555 1.78 CISPEP 1 LYS A 184 PRO A 185 0 -3.89 SITE 1 AC1 5 HIS A 302 CO2 A 502 HOH A1001 HOH A1002 SITE 2 AC1 5 HOH A1003 SITE 1 AC2 5 THR A 182 LYS A 210 GLU A 213 SER A 387 SITE 2 AC2 5 MG A 501 SITE 1 AC3 4 GLN A 312 LYS A 313 ASN A 314 HIS A 315 SITE 1 AC4 1 GLN B 614 SITE 1 AC5 8 LEU A 228 PHE A 229 HOH A1112 ARG B 544 SITE 2 AC5 8 SER B 546 HOH B1002 HOH B1007 HOH B1017 SITE 1 AC6 8 ALA A 239 ALA A 240 HOH A1062 PRO B 607 SITE 2 AC6 8 PHE B 609 TYR B 628 GLU B 634 HOH B1127 CRYST1 136.136 136.136 121.287 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007346 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007346 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008245 0.00000