HEADER TRANSFERASE, SIGNALING PROTEIN 07-MAY-12 4F1M TITLE CRYSTAL STRUCTURE OF THE G1179S ROCO4 KINASE DOMAIN BOUND TO APPCP TITLE 2 FROM D. DISCOIDEUM. COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE ROCO4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ROCO4 KINASE DOMAIN, UNP RESIDUES 1019-1292; COMPND 5 SYNONYM: RAS OF COMPLEX PROTEINS AND C-TERMINAL OF ROC 4; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DICTYOSTELIUM DISCOIDEUM; SOURCE 3 ORGANISM_COMMON: SLIME MOLD; SOURCE 4 ORGANISM_TAXID: 44689; SOURCE 5 STRAIN: AX3; SOURCE 6 GENE: DDB_G0288251, ROCO4; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PGEX4T1 NTEV KEYWDS PROTEIN KINASE, LRRK2, ROCO, KINASE, ATP-BINDING, NUCLEOTIDE-BINDING, KEYWDS 2 SERINE/THREONINE-PROTEIN KINASE, TRANSFERASE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.K.GILSBACH,I.R.VETTER,A.WITTINGHOFER,A.KORTHOLT REVDAT 3 13-SEP-23 4F1M 1 REMARK SEQADV REVDAT 2 11-JUL-12 4F1M 1 JRNL REVDAT 1 27-JUN-12 4F1M 0 JRNL AUTH B.K.GILSBACH,F.Y.HO,I.R.VETTER,P.J.VAN HAASTERT, JRNL AUTH 2 A.WITTINGHOFER,A.KORTHOLT JRNL TITL ROCO KINASE STRUCTURES GIVE INSIGHTS INTO THE MECHANISM OF JRNL TITL 2 PARKINSON DISEASE-RELATED LEUCINE-RICH-REPEAT KINASE 2 JRNL TITL 3 MUTATIONS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 10322 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22689969 JRNL DOI 10.1073/PNAS.1203223109 REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0093 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19611 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.263 REMARK 3 R VALUE (WORKING SET) : 0.261 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1033 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.04 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.09 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1199 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3260 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2219 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 96 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : 0.08000 REMARK 3 B33 (A**2) : -0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.262 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.212 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.165 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.193 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.916 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.872 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2324 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3151 ; 0.956 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 279 ; 4.627 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;35.325 ;24.571 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 409 ;14.291 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;14.202 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 343 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1737 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 3.7500 -2.9969 -21.6362 REMARK 3 T TENSOR REMARK 3 T11: 0.0366 T22: 0.0779 REMARK 3 T33: 0.0300 T12: -0.0104 REMARK 3 T13: 0.0174 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.1675 L22: 0.4197 REMARK 3 L33: 0.4372 L12: 0.0676 REMARK 3 L13: 0.1333 L23: -0.1155 REMARK 3 S TENSOR REMARK 3 S11: 0.0398 S12: -0.0508 S13: -0.0222 REMARK 3 S21: 0.0425 S22: -0.0046 S23: 0.0120 REMARK 3 S31: -0.0209 S32: 0.0216 S33: -0.0352 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4F1M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000072340. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9778 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20648 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 41.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.14100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.68800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3DTC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS- TRIS, 0.2 M NA/K TARTRATE; REMARK 280 11% PEG 3350, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 166.42350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 21.14150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 21.14150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 249.63525 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 21.14150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 21.14150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 83.21175 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 21.14150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 21.14150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 249.63525 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 21.14150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 21.14150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 83.21175 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 166.42350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1006 REMARK 465 ALA A 1007 REMARK 465 MET A 1008 REMARK 465 GLY A 1009 REMARK 465 GLY A 1010 REMARK 465 SER A 1011 REMARK 465 GLU A 1012 REMARK 465 PHE A 1013 REMARK 465 PRO A 1014 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A1015 CG CD CE NZ REMARK 470 SER A1016 OG REMARK 470 ARG A1017 CG CD NE CZ NH1 NH2 REMARK 470 LEU A1018 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 1179 O HOH A 1481 1.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A1180 CB - CA - C ANGL. DEV. = -12.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A1061 4.50 -68.31 REMARK 500 ASN A1099 75.54 52.89 REMARK 500 ASP A1154 33.12 -147.76 REMARK 500 ASP A1177 76.62 61.64 REMARK 500 PHE A1178 30.41 -97.37 REMARK 500 LEU A1180 0.81 80.64 REMARK 500 ASN A1194 83.01 -65.85 REMARK 500 GLU A1207 72.12 -101.94 REMARK 500 THR A1211 -158.74 -129.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACP A 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTB A 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4F0F RELATED DB: PDB REMARK 900 THE WT PROTEIN IN ACTIVE CONFORMATION REMARK 900 RELATED ID: 4F0G RELATED DB: PDB REMARK 900 THE WT PROTEIN IN IN-ACTIVE CONFORMATION REMARK 900 RELATED ID: 4F1O RELATED DB: PDB REMARK 900 THE L1178T MUTANT PROTEIN BOUND TO APPCP IN THE ACTIVE CONFORMATION REMARK 900 RELATED ID: 4F1T RELATED DB: PDB REMARK 900 THE DAME PROTEIN BOUND TO THE ROCK INHIBITOR H1152 DBREF 4F1M A 1019 1292 UNP Q6XHB2 ROCO4_DICDI 1019 1292 SEQADV 4F1M GLY A 1006 UNP Q6XHB2 EXPRESSION TAG SEQADV 4F1M ALA A 1007 UNP Q6XHB2 EXPRESSION TAG SEQADV 4F1M MET A 1008 UNP Q6XHB2 EXPRESSION TAG SEQADV 4F1M GLY A 1009 UNP Q6XHB2 EXPRESSION TAG SEQADV 4F1M GLY A 1010 UNP Q6XHB2 EXPRESSION TAG SEQADV 4F1M SER A 1011 UNP Q6XHB2 EXPRESSION TAG SEQADV 4F1M GLU A 1012 UNP Q6XHB2 EXPRESSION TAG SEQADV 4F1M PHE A 1013 UNP Q6XHB2 EXPRESSION TAG SEQADV 4F1M PRO A 1014 UNP Q6XHB2 EXPRESSION TAG SEQADV 4F1M LYS A 1015 UNP Q6XHB2 EXPRESSION TAG SEQADV 4F1M SER A 1016 UNP Q6XHB2 EXPRESSION TAG SEQADV 4F1M ARG A 1017 UNP Q6XHB2 EXPRESSION TAG SEQADV 4F1M LEU A 1018 UNP Q6XHB2 EXPRESSION TAG SEQADV 4F1M SER A 1179 UNP Q6XHB2 GLY 1179 ENGINEERED MUTATION SEQRES 1 A 287 GLY ALA MET GLY GLY SER GLU PHE PRO LYS SER ARG LEU SEQRES 2 A 287 PRO THR LEU ALA ASP ASN GLU ILE GLU TYR GLU LYS GLN SEQRES 3 A 287 ILE GLY LYS GLY GLY PHE GLY LEU VAL HIS LYS GLY ARG SEQRES 4 A 287 LEU VAL LYS ASP LYS SER VAL VAL ALA ILE LYS SER LEU SEQRES 5 A 287 ILE LEU GLY ASP SER GLU GLY GLU THR GLU MET ILE GLU SEQRES 6 A 287 LYS PHE GLN GLU PHE GLN ARG GLU VAL PHE ILE MET SER SEQRES 7 A 287 ASN LEU ASN HIS PRO ASN ILE VAL LYS LEU TYR GLY LEU SEQRES 8 A 287 MET HIS ASN PRO PRO ARG MET VAL MET GLU PHE VAL PRO SEQRES 9 A 287 CYS GLY ASP LEU TYR HIS ARG LEU LEU ASP LYS ALA HIS SEQRES 10 A 287 PRO ILE LYS TRP SER VAL LYS LEU ARG LEU MET LEU ASP SEQRES 11 A 287 ILE ALA LEU GLY ILE GLU TYR MET GLN ASN GLN ASN PRO SEQRES 12 A 287 PRO ILE VAL HIS ARG ASP LEU ARG SER PRO ASN ILE PHE SEQRES 13 A 287 LEU GLN SER LEU ASP GLU ASN ALA PRO VAL CYS ALA LYS SEQRES 14 A 287 VAL ALA ASP PHE SER LEU SER GLN GLN SER VAL HIS SER SEQRES 15 A 287 VAL SER GLY LEU LEU GLY ASN PHE GLN TRP MET ALA PRO SEQRES 16 A 287 GLU THR ILE GLY ALA GLU GLU GLU SER TYR THR GLU LYS SEQRES 17 A 287 ALA ASP THR TYR SER PHE ALA MET ILE LEU TYR THR ILE SEQRES 18 A 287 LEU THR GLY GLU GLY PRO PHE ASP GLU TYR SER TYR GLY SEQRES 19 A 287 LYS ILE LYS PHE ILE ASN MET ILE ARG GLU GLU GLY LEU SEQRES 20 A 287 ARG PRO THR ILE PRO GLU ASP CYS PRO PRO ARG LEU ARG SEQRES 21 A 287 ASN VAL ILE GLU LEU CYS TRP SER GLY ASP PRO LYS LYS SEQRES 22 A 287 ARG PRO HIS PHE SER TYR ILE VAL LYS GLU LEU SER GLU SEQRES 23 A 287 LEU HET ACP A1301 31 HET BTB A1302 14 HET MG A1303 1 HETNAM ACP PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER HETNAM BTB 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL- HETNAM 2 BTB PROPANE-1,3-DIOL HETNAM MG MAGNESIUM ION HETSYN ACP ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE HETSYN BTB BIS-TRIS BUFFER FORMUL 2 ACP C11 H18 N5 O12 P3 FORMUL 3 BTB C8 H19 N O5 FORMUL 4 MG MG 2+ FORMUL 5 HOH *96(H2 O) HELIX 1 1 ALA A 1022 ASN A 1024 5 3 HELIX 2 2 GLY A 1064 SER A 1083 1 20 HELIX 3 3 ASP A 1112 LEU A 1118 1 7 HELIX 4 4 LYS A 1125 ASN A 1145 1 21 HELIX 5 5 ARG A 1156 PRO A 1158 5 3 HELIX 6 6 ALA A 1199 GLY A 1204 1 6 HELIX 7 7 GLU A 1212 GLY A 1229 1 18 HELIX 8 8 GLY A 1239 GLU A 1250 1 12 HELIX 9 9 PRO A 1261 TRP A 1272 1 12 HELIX 10 10 ASP A 1275 ARG A 1279 5 5 HELIX 11 11 HIS A 1281 GLU A 1291 1 11 SHEET 1 A 5 ILE A1026 LYS A1034 0 SHEET 2 A 5 LEU A1039 LEU A1045 -1 O LYS A1042 N LYS A1030 SHEET 3 A 5 SER A1050 SER A1056 -1 O ILE A1054 N HIS A1041 SHEET 4 A 5 ARG A1102 GLU A1106 -1 O MET A1105 N ALA A1053 SHEET 5 A 5 LEU A1093 MET A1097 -1 N TYR A1094 O VAL A1104 SHEET 1 B 2 ILE A1160 LEU A1162 0 SHEET 2 B 2 ALA A1173 VAL A1175 -1 O LYS A1174 N PHE A1161 LINK OD2 ASP A1154 MG MG A1303 1555 1555 2.48 CISPEP 1 ASN A 1099 PRO A 1100 0 -3.10 CISPEP 2 ASN A 1147 PRO A 1148 0 -1.61 SITE 1 AC1 11 GLY A1035 VAL A1040 ALA A1053 GLU A1106 SITE 2 AC1 11 PHE A1107 VAL A1108 ARG A1156 PHE A1161 SITE 3 AC1 11 ASP A1177 HOH A1475 HOH A1476 SITE 1 AC2 2 LYS A1015 PHE A1080 SITE 1 AC3 3 ASP A1154 ASP A1177 SER A1179 CRYST1 42.283 42.283 332.847 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023650 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023650 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003004 0.00000