HEADER CELL CYCLE/CHAPERONE 09-MAY-12 4F38 TITLE CRYSTAL STRUCTURE OF GERANYLGERANYLATED RHOA IN COMPLEX WITH RHOGDI IN TITLE 2 ITS ACTIVE GPPNHP-BOUND FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSFORMING PROTEIN RHOA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RHO GDP-DISSOCIATION INHIBITOR 1; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: RHO GDI 1, GDI-1, RHO-GDI ALPHA; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RHOA, ARHA, ARHA2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PGTEV; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 GENE: ARHGDIA, C87222, GDI1; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: OPINM KEYWDS RHOA, RHOGDI, ACTIVE GPPNHP BOUND FORM, CELL CYCLE-CHAPERONE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Z.GUO,Z.TNIMOV,K.ALEXANDROV REVDAT 3 08-NOV-23 4F38 1 REMARK LINK REVDAT 2 15-AUG-12 4F38 1 JRNL REVDAT 1 23-MAY-12 4F38 0 JRNL AUTH Z.TNIMOV,Z.GUO,Y.GAMBIN,U.T.NGUYEN,Y.W.WU,D.ABANKWA, JRNL AUTH 2 A.STIGTER,B.M.COLLINS,H.WALDMANN,R.S.GOODY,K.ALEXANDROV JRNL TITL QUANTITATIVE ANALYSIS OF PRENYLATED RHOA INTERACTION WITH JRNL TITL 2 ITS CHAPERONE, RHOGDI. JRNL REF J.BIOL.CHEM. V. 287 26549 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22628549 JRNL DOI 10.1074/JBC.M112.371294 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.600 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 20741 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 544 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 829 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 29 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2992 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 80 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.09000 REMARK 3 B22 (A**2) : -1.86000 REMARK 3 B33 (A**2) : -0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.429 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.316 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 34.184 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.923 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.867 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3107 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4206 ; 1.743 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 379 ; 7.704 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;38.079 ;24.485 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 545 ;23.045 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;20.555 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 462 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2326 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1907 ; 0.716 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3075 ; 1.415 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1200 ; 2.095 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1131 ; 3.696 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 190 REMARK 3 ORIGIN FOR THE GROUP (A): -13.8612 -11.4865 30.0296 REMARK 3 T TENSOR REMARK 3 T11: 0.0474 T22: -0.0012 REMARK 3 T33: 0.0151 T12: 0.0008 REMARK 3 T13: -0.0149 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 0.3454 L22: 0.8870 REMARK 3 L33: 0.2274 L12: 0.0723 REMARK 3 L13: -0.1159 L23: -0.0941 REMARK 3 S TENSOR REMARK 3 S11: -0.0066 S12: 0.0274 S13: -0.0201 REMARK 3 S21: 0.0805 S22: -0.0580 S23: -0.0629 REMARK 3 S31: 0.0023 S32: 0.0200 S33: 0.0646 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 204 REMARK 3 ORIGIN FOR THE GROUP (A): -11.8376 10.7279 10.7324 REMARK 3 T TENSOR REMARK 3 T11: 0.0138 T22: 0.0150 REMARK 3 T33: 0.0209 T12: 0.0137 REMARK 3 T13: -0.0058 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 0.3639 L22: 1.3793 REMARK 3 L33: 0.4273 L12: 0.6647 REMARK 3 L13: -0.0910 L23: -0.1733 REMARK 3 S TENSOR REMARK 3 S11: -0.0141 S12: 0.0385 S13: 0.0279 REMARK 3 S21: 0.0270 S22: 0.0475 S23: 0.0229 REMARK 3 S31: -0.0002 S32: 0.0177 S33: -0.0334 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 202 A 203 REMARK 3 ORIGIN FOR THE GROUP (A): -25.357 -7.122 31.233 REMARK 3 T TENSOR REMARK 3 T11: 0.0327 T22: 0.0327 REMARK 3 T33: 0.0327 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 204 A 204 REMARK 3 ORIGIN FOR THE GROUP (A): -20.1945 -21.8245 29.4688 REMARK 3 T TENSOR REMARK 3 T11: 0.5182 T22: 0.0433 REMARK 3 T33: 0.0069 T12: -0.1159 REMARK 3 T13: 0.1233 T23: -0.0775 REMARK 3 L TENSOR REMARK 3 L11: 17.5425 L22: -0.7628 REMARK 3 L33: -11.9345 L12: -1.4091 REMARK 3 L13: 5.7993 L23: -3.7842 REMARK 3 S TENSOR REMARK 3 S11: -0.6157 S12: -0.3698 S13: -0.1921 REMARK 3 S21: -1.7947 S22: 0.4884 S23: -0.3534 REMARK 3 S31: 0.8379 S32: -0.5390 S33: 0.1273 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 301 A 335 REMARK 3 ORIGIN FOR THE GROUP (A): -14.2990 1.4422 19.8765 REMARK 3 T TENSOR REMARK 3 T11: 0.0632 T22: 0.0130 REMARK 3 T33: 0.0766 T12: 0.0180 REMARK 3 T13: -0.0029 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 0.0025 L22: -0.0364 REMARK 3 L33: 0.0112 L12: -0.0075 REMARK 3 L13: -0.0597 L23: 0.0096 REMARK 3 S TENSOR REMARK 3 S11: 0.0492 S12: 0.0183 S13: -0.0130 REMARK 3 S21: 0.0054 S22: -0.0168 S23: 0.0332 REMARK 3 S31: -0.0232 S32: 0.0075 S33: -0.0324 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4F38 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000072398. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20741 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 68.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 12.330 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : 0.07000 REMARK 200 FOR THE DATA SET : 12.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.26500 REMARK 200 R SYM FOR SHELL (I) : 0.27900 REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 1DOA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 3350, 0.2M MGCL2, 0.1M REMARK 280 HEPES-NAOH, 25MM HEPES-NAOH PH 7.2, 40MM NACL, 3MM MGCL2, 10M REMARK 280 GMPPNP, 1MM TCEP, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K, PH 7.4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.01500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.78800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.01500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.78800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 LEU A 191 REMARK 465 VAL A 192 REMARK 465 LEU A 193 REMARK 465 GLY B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 3 REMARK 465 GLN B 4 REMARK 465 GLU B 5 REMARK 465 PRO B 6 REMARK 465 GLU B 19 REMARK 465 GLU B 20 REMARK 465 ASP B 21 REMARK 465 GLU B 22 REMARK 465 HIS B 23 REMARK 465 SER B 24 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 182 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 183 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 185 CG CD CE NZ REMARK 470 LYS A 186 CG CD CE NZ REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 GLU B 9 CG CD OE1 OE2 REMARK 470 GLN B 10 CG CD OE1 NE2 REMARK 470 LEU B 11 CG CD1 CD2 REMARK 470 GLN B 13 CG CD OE1 NE2 REMARK 470 ILE B 14 CG1 CG2 CD1 REMARK 470 ASN B 18 CG OD1 ND2 REMARK 470 ASN B 26 CG OD1 ND2 REMARK 470 ARG B 58 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 201 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 54 MG MG A 203 1.31 REMARK 500 OD1 ASP A 45 OE1 GLU A 54 1.80 REMARK 500 O GLU A 142 OD2 ASP A 146 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL B 59 CB - CA - C ANGL. DEV. = -32.5 DEGREES REMARK 500 PRO B 83 CB - CA - C ANGL. DEV. = -13.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 13 178.52 -55.75 REMARK 500 ALA A 15 8.78 93.47 REMARK 500 SER A 26 -75.57 -76.72 REMARK 500 ASP A 28 -4.10 77.68 REMARK 500 VAL A 33 -55.89 -120.52 REMARK 500 ASP A 65 0.62 -68.41 REMARK 500 ASP A 76 -20.75 80.90 REMARK 500 ASN A 109 45.14 -103.47 REMARK 500 ASN A 123 54.00 -118.24 REMARK 500 LYS A 164 -10.30 71.76 REMARK 500 ALA A 181 83.83 -157.96 REMARK 500 ARG A 182 101.43 -165.54 REMARK 500 ARG A 183 142.95 -170.94 REMARK 500 LYS A 185 54.10 -105.50 REMARK 500 GLU B 9 -73.08 -69.32 REMARK 500 GLN B 10 0.71 -56.22 REMARK 500 GLU B 17 44.04 -147.97 REMARK 500 ALA B 63 94.21 -168.86 REMARK 500 PRO B 65 -18.09 -44.41 REMARK 500 CYS B 79 115.12 -178.18 REMARK 500 THR B 81 -70.05 -29.24 REMARK 500 ALA B 82 136.71 -32.28 REMARK 500 ARG B 120 -42.11 -134.90 REMARK 500 THR B 182 -157.60 -141.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL B 59 ALA B 60 71.33 REMARK 500 ASN B 119 ARG B 120 -146.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 19 OG1 REMARK 620 2 THR A 37 O 71.9 REMARK 620 3 GNP A 204 O2G 105.2 73.6 REMARK 620 4 GNP A 204 O2B 62.9 115.4 76.5 REMARK 620 5 HOH A 301 O 55.4 58.2 49.9 58.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 45 OD1 REMARK 620 2 ASP A 45 OD2 49.6 REMARK 620 3 HOH A 335 O 120.6 95.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GER A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 204 REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE REFERENCES FOR THIS PROTEIN DO NOT CURRENTLY EXIST IN REMARK 999 UNIPROT DBREF 4F38 A -1 193 PDB 4F38 4F38 -1 193 DBREF 4F38 B 1 204 PDB 4F38 4F38 1 204 SEQRES 1 A 195 GLY HIS MET ALA ALA ILE ARG LYS LYS LEU VAL ILE VAL SEQRES 2 A 195 GLY ASP GLY ALA CYS GLY LYS THR CYS LEU LEU ILE VAL SEQRES 3 A 195 PHE SER LYS ASP GLN PHE PRO GLU VAL TYR VAL PRO THR SEQRES 4 A 195 VAL PHE GLU ASN TYR VAL ALA ASP ILE GLU VAL ASP GLY SEQRES 5 A 195 LYS GLN VAL GLU LEU ALA LEU TRP ASP THR ALA GLY GLN SEQRES 6 A 195 GLU ASP TYR ASP ARG LEU ARG PRO LEU SER TYR PRO ASP SEQRES 7 A 195 THR ASP VAL ILE LEU MET CYS PHE SER ILE ASP SER PRO SEQRES 8 A 195 ASP SER LEU GLU ASN ILE PRO GLU LYS TRP THR PRO GLU SEQRES 9 A 195 VAL LYS HIS PHE CYS PRO ASN VAL PRO ILE ILE LEU VAL SEQRES 10 A 195 GLY ASN LYS LYS ASP LEU ARG ASN ASP GLU HIS THR ARG SEQRES 11 A 195 ARG GLU LEU ALA LYS MET LYS GLN GLU PRO VAL LYS PRO SEQRES 12 A 195 GLU GLU GLY ARG ASP MET ALA ASN ARG ILE GLY ALA PHE SEQRES 13 A 195 GLY TYR MET GLU CYS SER ALA LYS THR LYS ASP GLY VAL SEQRES 14 A 195 ARG GLU VAL PHE GLU MET ALA THR ARG ALA ALA LEU GLN SEQRES 15 A 195 ALA ARG ARG GLY LYS LYS LYS SER GLY CYS LEU VAL LEU SEQRES 1 B 204 GLY ALA GLU GLN GLU PRO THR ALA GLU GLN LEU ALA GLN SEQRES 2 B 204 ILE ALA ALA GLU ASN GLU GLU ASP GLU HIS SER VAL ASN SEQRES 3 B 204 TYR LYS PRO PRO ALA GLN LYS SER ILE GLN GLU ILE GLN SEQRES 4 B 204 GLU LEU ASP LYS ASP ASP GLU SER LEU ARG LYS TYR LYS SEQRES 5 B 204 GLU ALA LEU LEU GLY ARG VAL ALA VAL SER ALA ASP PRO SEQRES 6 B 204 ASN VAL PRO ASN VAL VAL VAL THR ARG LEU THR LEU VAL SEQRES 7 B 204 CYS SER THR ALA PRO GLY PRO LEU GLU LEU ASP LEU THR SEQRES 8 B 204 GLY ASP LEU GLU SER PHE LYS LYS GLN SER PHE VAL LEU SEQRES 9 B 204 LYS GLU GLY VAL GLU TYR ARG ILE LYS ILE SER PHE ARG SEQRES 10 B 204 VAL ASN ARG GLU ILE VAL SER GLY MET LYS TYR ILE GLN SEQRES 11 B 204 HIS THR TYR ARG LYS GLY VAL LYS ILE ASP LYS THR ASP SEQRES 12 B 204 TYR MET VAL GLY SER TYR GLY PRO ARG ALA GLU GLU TYR SEQRES 13 B 204 GLU PHE LEU THR PRO MET GLU GLU ALA PRO LYS GLY MET SEQRES 14 B 204 LEU ALA ARG GLY SER TYR ASN ILE LYS SER ARG PHE THR SEQRES 15 B 204 ASP ASP ASP ARG THR ASP HIS LEU SER TRP GLU TRP ASN SEQRES 16 B 204 LEU THR ILE LYS LYS GLU TRP LYS ASP HET GER A 201 20 HET MG A 202 1 HET MG A 203 1 HET GNP A 204 32 HETNAM GER GERAN-8-YL GERAN HETNAM MG MAGNESIUM ION HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER FORMUL 3 GER C20 H34 FORMUL 4 MG 2(MG 2+) FORMUL 6 GNP C10 H17 N6 O13 P3 FORMUL 7 HOH *80(H2 O) HELIX 1 1 GLY A 17 LYS A 27 1 11 HELIX 2 2 GLN A 63 ASP A 67 5 5 HELIX 3 3 LEU A 69 TYR A 74 5 6 HELIX 4 4 SER A 88 ASN A 94 1 7 HELIX 5 5 LYS A 98 CYS A 107 1 10 HELIX 6 6 LYS A 118 ARG A 122 5 5 HELIX 7 7 ASP A 124 MET A 134 1 11 HELIX 8 8 LYS A 140 ILE A 151 1 12 HELIX 9 9 GLY A 166 LEU A 179 1 14 HELIX 10 10 GLN B 10 ALA B 15 1 6 HELIX 11 11 SER B 34 LEU B 41 1 8 HELIX 12 12 ASP B 45 GLY B 57 1 13 HELIX 13 13 ASP B 93 LYS B 99 5 7 SHEET 1 A 6 TYR A 42 GLU A 47 0 SHEET 2 A 6 GLN A 52 TRP A 58 -1 O LEU A 57 N TYR A 42 SHEET 3 A 6 ILE A 4 VAL A 11 1 N ILE A 4 O GLU A 54 SHEET 4 A 6 VAL A 79 SER A 85 1 O CYS A 83 N VAL A 11 SHEET 5 A 6 ILE A 112 ASN A 117 1 O ASN A 117 N PHE A 84 SHEET 6 A 6 GLY A 155 GLU A 158 1 O MET A 157 N LEU A 114 SHEET 1 B 4 LEU B 86 ASP B 89 0 SHEET 2 B 4 VAL B 70 VAL B 78 -1 N LEU B 75 O LEU B 88 SHEET 3 B 4 GLU B 109 VAL B 118 -1 O SER B 115 N THR B 73 SHEET 4 B 4 ARG B 152 TYR B 156 -1 O TYR B 156 N PHE B 116 SHEET 1 C 4 LEU B 86 ASP B 89 0 SHEET 2 C 4 VAL B 70 VAL B 78 -1 N LEU B 75 O LEU B 88 SHEET 3 C 4 GLU B 109 VAL B 118 -1 O SER B 115 N THR B 73 SHEET 4 C 4 GLU B 163 GLU B 164 -1 O GLU B 163 N TYR B 110 SHEET 1 D 5 SER B 101 LYS B 105 0 SHEET 2 D 5 LEU B 190 LYS B 199 1 O THR B 197 N PHE B 102 SHEET 3 D 5 GLY B 173 THR B 182 -1 N TYR B 175 O LEU B 196 SHEET 4 D 5 VAL B 123 ARG B 134 -1 N TYR B 133 O ASN B 176 SHEET 5 D 5 VAL B 137 TYR B 149 -1 O ILE B 139 N THR B 132 LINK SG CYS A 190 C1 GER A 201 1555 1555 1.81 LINK OG1 THR A 19 MG MG A 202 1555 1555 2.26 LINK O THR A 37 MG MG A 202 1555 1555 2.34 LINK OD1 ASP A 45 MG MG A 203 1555 1555 1.79 LINK OD2 ASP A 45 MG MG A 203 1555 1555 2.86 LINK MG MG A 202 O2G GNP A 204 1555 1555 1.79 LINK MG MG A 202 O2B GNP A 204 1555 1555 2.35 LINK MG MG A 202 O HOH A 301 1555 1555 2.92 LINK MG MG A 203 O HOH A 335 1555 1555 2.91 CISPEP 1 GLY A 184 LYS A 185 0 -0.77 CISPEP 2 SER A 188 GLY A 189 0 -5.56 CISPEP 3 GLY A 189 CYS A 190 0 -4.16 CISPEP 4 VAL B 25 ASN B 26 0 -9.70 CISPEP 5 LEU B 56 GLY B 57 0 -24.98 SITE 1 AC1 12 GLY A 189 CYS A 190 LEU B 75 LEU B 77 SITE 2 AC1 12 TYR B 110 GLN B 130 ILE B 139 ASP B 140 SITE 3 AC1 12 PRO B 166 TYR B 175 ILE B 177 LEU B 196 SITE 1 AC2 6 THR A 19 THR A 37 ASP A 59 THR A 60 SITE 2 AC2 6 GNP A 204 HOH A 301 SITE 1 AC3 4 ASP A 45 GLU A 54 HIS A 126 HOH A 335 SITE 1 AC4 20 ILE A 4 GLY A 14 ALA A 15 CYS A 16 SITE 2 AC4 20 GLY A 17 LYS A 18 THR A 19 CYS A 20 SITE 3 AC4 20 VAL A 35 THR A 37 GLN A 52 GLN A 63 SITE 4 AC4 20 LYS A 118 ASP A 120 SER A 160 ALA A 161 SITE 5 AC4 20 LYS A 162 MG A 202 HOH A 301 HOH A 306 CRYST1 46.000 71.576 136.030 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021739 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013971 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007351 0.00000