HEADER HYDROLASE 10-MAY-12 4F45 TITLE CRYSTAL STRUCTURE OF HUMAN CD38 E226Q MUTANT IN COMPLEX WITH NAADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-RIBOSYL CYCLASE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 46-300; COMPND 5 SYNONYM: CYCLIC ADP-RIBOSE HYDROLASE 1, CADPR HYDROLASE 1, T10; COMPND 6 EC: 3.2.2.5; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD38; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: X33; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPICZALPHA KEYWDS CD38, ADP-RIBOSYL CYCLASE, NAADP, CALCIUM SIGNALING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.ZHANG,H.C.LEE,Q.HAO REVDAT 1 03-APR-13 4F45 0 JRNL AUTH H.ZHANG,R.GRAEFF,H.C.LEE,Q.HAO JRNL TITL CRYSTAL STRUCTURES OF HUMAN CD38 IN COMPLEX WITH NAADP AND JRNL TITL 2 ADPRP JRNL REF MESSENGER V. 2 44 2013 JRNL REFN ISSN 2167-955X REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 28791 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1448 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1577 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4033 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 88 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.51000 REMARK 3 B22 (A**2) : 2.16000 REMARK 3 B33 (A**2) : 0.92000 REMARK 3 B12 (A**2) : -0.96000 REMARK 3 B13 (A**2) : 1.34000 REMARK 3 B23 (A**2) : 0.97000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.236 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.194 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.148 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.561 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4251 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2917 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5786 ; 1.523 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7004 ; 0.850 ; 3.008 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 492 ; 5.786 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 202 ;34.850 ;24.158 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 724 ;14.575 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;13.821 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 627 ; 0.142 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4590 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 866 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 45 A 106 REMARK 3 ORIGIN FOR THE GROUP (A):-399.5460-918.6380 9.3870 REMARK 3 T TENSOR REMARK 3 T11: 0.1258 T22: 0.0712 REMARK 3 T33: 0.1908 T12: 0.0177 REMARK 3 T13: 0.0275 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 5.8677 L22: 2.5708 REMARK 3 L33: 6.4122 L12: 1.1464 REMARK 3 L13: -1.8632 L23: -1.1004 REMARK 3 S TENSOR REMARK 3 S11: 0.1813 S12: -0.2100 S13: 0.7658 REMARK 3 S21: -0.0847 S22: -0.0666 S23: -0.0270 REMARK 3 S31: -0.6186 S32: 0.2732 S33: -0.1147 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 107 A 140 REMARK 3 ORIGIN FOR THE GROUP (A):-399.8180-928.4720 -6.4750 REMARK 3 T TENSOR REMARK 3 T11: 0.1851 T22: 0.3616 REMARK 3 T33: 0.2040 T12: -0.0142 REMARK 3 T13: 0.0146 T23: 0.1522 REMARK 3 L TENSOR REMARK 3 L11: 3.0971 L22: 6.4598 REMARK 3 L33: 10.3130 L12: 0.0953 REMARK 3 L13: -3.6080 L23: 5.0978 REMARK 3 S TENSOR REMARK 3 S11: -0.3017 S12: 0.7253 S13: 0.0617 REMARK 3 S21: -0.2415 S22: 0.4693 S23: -0.2783 REMARK 3 S31: 0.3638 S32: -0.3681 S33: -0.1675 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 141 A 193 REMARK 3 ORIGIN FOR THE GROUP (A):-402.1790-925.7620 9.5240 REMARK 3 T TENSOR REMARK 3 T11: 0.0506 T22: 0.1175 REMARK 3 T33: 0.1077 T12: 0.0331 REMARK 3 T13: -0.0118 T23: 0.0503 REMARK 3 L TENSOR REMARK 3 L11: 6.4293 L22: 1.3266 REMARK 3 L33: 9.9813 L12: 1.1028 REMARK 3 L13: -3.8674 L23: -1.2946 REMARK 3 S TENSOR REMARK 3 S11: 0.0547 S12: -0.3986 S13: 0.0275 REMARK 3 S21: -0.1201 S22: -0.0033 S23: 0.0476 REMARK 3 S31: 0.0465 S32: 0.0833 S33: -0.0514 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 194 A 243 REMARK 3 ORIGIN FOR THE GROUP (A):-407.4710-938.3150 -5.2070 REMARK 3 T TENSOR REMARK 3 T11: 0.5151 T22: 0.3159 REMARK 3 T33: 0.0671 T12: -0.2343 REMARK 3 T13: -0.0015 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 9.3174 L22: 6.5717 REMARK 3 L33: 8.8470 L12: -0.6809 REMARK 3 L13: -3.0860 L23: -1.3127 REMARK 3 S TENSOR REMARK 3 S11: -0.8905 S12: 0.4838 S13: -0.2905 REMARK 3 S21: 0.0703 S22: 0.6059 S23: 0.0458 REMARK 3 S31: 1.5507 S32: -1.2807 S33: 0.2847 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 244 A 291 REMARK 3 ORIGIN FOR THE GROUP (A):-400.7710-946.9510 -9.4290 REMARK 3 T TENSOR REMARK 3 T11: 1.0308 T22: 0.2488 REMARK 3 T33: 0.3229 T12: -0.0666 REMARK 3 T13: 0.1979 T23: -0.0772 REMARK 3 L TENSOR REMARK 3 L11: 11.0310 L22: 8.2976 REMARK 3 L33: 6.3755 L12: 0.4456 REMARK 3 L13: -4.1813 L23: -2.3996 REMARK 3 S TENSOR REMARK 3 S11: -0.8269 S12: -0.0778 S13: -1.6677 REMARK 3 S21: -0.1659 S22: -0.1275 S23: -0.5535 REMARK 3 S31: 2.2961 S32: -0.2915 S33: 0.9544 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 45 B 107 REMARK 3 ORIGIN FOR THE GROUP (A):-418.1850-954.2270 26.4180 REMARK 3 T TENSOR REMARK 3 T11: 0.2070 T22: 0.1163 REMARK 3 T33: 0.4015 T12: 0.0056 REMARK 3 T13: -0.0496 T23: -0.1222 REMARK 3 L TENSOR REMARK 3 L11: 16.2188 L22: 3.0580 REMARK 3 L33: 4.4959 L12: -1.8528 REMARK 3 L13: 1.8011 L23: -0.2288 REMARK 3 S TENSOR REMARK 3 S11: 0.2965 S12: 0.6598 S13: -2.2073 REMARK 3 S21: -0.0187 S22: -0.1605 S23: 0.4692 REMARK 3 S31: 0.5048 S32: -0.1637 S33: -0.1361 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 108 B 138 REMARK 3 ORIGIN FOR THE GROUP (A):-427.1800-938.7500 28.1170 REMARK 3 T TENSOR REMARK 3 T11: 0.0652 T22: 0.3525 REMARK 3 T33: 0.0789 T12: 0.0370 REMARK 3 T13: -0.0230 T23: 0.0188 REMARK 3 L TENSOR REMARK 3 L11: 4.2514 L22: 6.3116 REMARK 3 L33: 1.1162 L12: -0.7579 REMARK 3 L13: -0.0477 L23: 0.4394 REMARK 3 S TENSOR REMARK 3 S11: 0.0417 S12: 0.3885 S13: -0.3422 REMARK 3 S21: 0.2244 S22: 0.1252 S23: 0.1986 REMARK 3 S31: 0.1535 S32: 0.1679 S33: -0.1670 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 139 B 176 REMARK 3 ORIGIN FOR THE GROUP (A):-417.9000-949.1100 29.5370 REMARK 3 T TENSOR REMARK 3 T11: 0.1864 T22: 0.1699 REMARK 3 T33: 0.1060 T12: -0.0219 REMARK 3 T13: -0.0021 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 13.5748 L22: 4.2730 REMARK 3 L33: 2.6650 L12: -3.8638 REMARK 3 L13: 1.8409 L23: -1.6847 REMARK 3 S TENSOR REMARK 3 S11: -0.1625 S12: -0.2901 S13: -1.1318 REMARK 3 S21: 0.2290 S22: 0.1963 S23: 0.1857 REMARK 3 S31: 0.1395 S32: 0.0410 S33: -0.0337 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 177 B 210 REMARK 3 ORIGIN FOR THE GROUP (A):-416.9700-937.7340 26.1870 REMARK 3 T TENSOR REMARK 3 T11: 0.0554 T22: 0.2579 REMARK 3 T33: 0.0339 T12: -0.0494 REMARK 3 T13: -0.0211 T23: 0.0273 REMARK 3 L TENSOR REMARK 3 L11: 4.2585 L22: 5.3111 REMARK 3 L33: 1.6809 L12: -3.2404 REMARK 3 L13: -0.3986 L23: -0.9797 REMARK 3 S TENSOR REMARK 3 S11: -0.0049 S12: 0.3396 S13: 0.2036 REMARK 3 S21: 0.0041 S22: -0.0324 S23: -0.2781 REMARK 3 S31: 0.0639 S32: 0.0684 S33: 0.0373 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 211 B 296 REMARK 3 ORIGIN FOR THE GROUP (A):-424.3950-924.6060 33.1550 REMARK 3 T TENSOR REMARK 3 T11: 0.1620 T22: 0.2135 REMARK 3 T33: 0.1219 T12: 0.0232 REMARK 3 T13: 0.0098 T23: -0.0341 REMARK 3 L TENSOR REMARK 3 L11: 6.3880 L22: 4.0632 REMARK 3 L33: 5.9514 L12: 1.6509 REMARK 3 L13: -3.1007 L23: -0.7338 REMARK 3 S TENSOR REMARK 3 S11: 0.3740 S12: -0.4742 S13: 0.7521 REMARK 3 S21: 0.6643 S22: -0.1452 S23: 0.1338 REMARK 3 S31: -0.2513 S32: 0.1761 S33: -0.2287 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4F45 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAY-12. REMARK 100 THE RCSB ID CODE IS RCSB072431. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97916 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MX225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28795 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.26600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE PH 4.0, 12% PEG REMARK 280 20K, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 247 REMARK 465 GLU A 248 REMARK 465 ASP A 249 REMARK 465 SER A 250 REMARK 465 THR A 297 REMARK 465 SER A 298 REMARK 465 GLU A 299 REMARK 465 ILE A 300 REMARK 465 GLU B 44 REMARK 465 GLY B 246 REMARK 465 ARG B 247 REMARK 465 GLU B 248 REMARK 465 ASP B 249 REMARK 465 SER B 250 REMARK 465 THR B 297 REMARK 465 SER B 298 REMARK 465 GLU B 299 REMARK 465 ILE B 300 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 292 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 95 -2.53 70.44 REMARK 500 ILE A 128 51.73 -147.27 REMARK 500 ASP A 179 -75.68 -104.78 REMARK 500 ASN A 182 58.73 -93.04 REMARK 500 ASP A 202 -120.68 57.25 REMARK 500 HIS B 79 52.32 -105.56 REMARK 500 PRO B 98 2.37 -68.01 REMARK 500 ILE B 128 49.70 -149.46 REMARK 500 ASP B 179 -70.51 -119.37 REMARK 500 ASN B 182 52.14 -90.97 REMARK 500 ASP B 202 -115.96 61.49 REMARK 500 ASN B 270 38.43 71.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DN4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DN4 B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4F46 RELATED DB: PDB DBREF 4F45 A 46 300 UNP P28907 CD38_HUMAN 46 300 DBREF 4F45 B 46 300 UNP P28907 CD38_HUMAN 46 300 SEQADV 4F45 GLU A 44 UNP P28907 EXPRESSION TAG SEQADV 4F45 PHE A 45 UNP P28907 EXPRESSION TAG SEQADV 4F45 THR A 49 UNP P28907 GLN 49 ENGINEERED MUTATION SEQADV 4F45 ASP A 100 UNP P28907 ASN 100 ENGINEERED MUTATION SEQADV 4F45 ASP A 164 UNP P28907 ASN 164 ENGINEERED MUTATION SEQADV 4F45 ASP A 209 UNP P28907 ASN 209 ENGINEERED MUTATION SEQADV 4F45 ASP A 219 UNP P28907 ASN 219 ENGINEERED MUTATION SEQADV 4F45 GLN A 226 UNP P28907 GLU 226 ENGINEERED MUTATION SEQADV 4F45 GLU B 44 UNP P28907 EXPRESSION TAG SEQADV 4F45 PHE B 45 UNP P28907 EXPRESSION TAG SEQADV 4F45 THR B 49 UNP P28907 GLN 49 ENGINEERED MUTATION SEQADV 4F45 ASP B 100 UNP P28907 ASN 100 ENGINEERED MUTATION SEQADV 4F45 ASP B 164 UNP P28907 ASN 164 ENGINEERED MUTATION SEQADV 4F45 ASP B 209 UNP P28907 ASN 209 ENGINEERED MUTATION SEQADV 4F45 ASP B 219 UNP P28907 ASN 219 ENGINEERED MUTATION SEQADV 4F45 GLN B 226 UNP P28907 GLU 226 ENGINEERED MUTATION SEQRES 1 A 257 GLU PHE TRP ARG GLN THR TRP SER GLY PRO GLY THR THR SEQRES 2 A 257 LYS ARG PHE PRO GLU THR VAL LEU ALA ARG CYS VAL LYS SEQRES 3 A 257 TYR THR GLU ILE HIS PRO GLU MET ARG HIS VAL ASP CYS SEQRES 4 A 257 GLN SER VAL TRP ASP ALA PHE LYS GLY ALA PHE ILE SER SEQRES 5 A 257 LYS HIS PRO CYS ASP ILE THR GLU GLU ASP TYR GLN PRO SEQRES 6 A 257 LEU MET LYS LEU GLY THR GLN THR VAL PRO CYS ASN LYS SEQRES 7 A 257 ILE LEU LEU TRP SER ARG ILE LYS ASP LEU ALA HIS GLN SEQRES 8 A 257 PHE THR GLN VAL GLN ARG ASP MET PHE THR LEU GLU ASP SEQRES 9 A 257 THR LEU LEU GLY TYR LEU ALA ASP ASP LEU THR TRP CYS SEQRES 10 A 257 GLY GLU PHE ASP THR SER LYS ILE ASN TYR GLN SER CYS SEQRES 11 A 257 PRO ASP TRP ARG LYS ASP CYS SER ASN ASN PRO VAL SER SEQRES 12 A 257 VAL PHE TRP LYS THR VAL SER ARG ARG PHE ALA GLU ALA SEQRES 13 A 257 ALA CYS ASP VAL VAL HIS VAL MET LEU ASP GLY SER ARG SEQRES 14 A 257 SER LYS ILE PHE ASP LYS ASP SER THR PHE GLY SER VAL SEQRES 15 A 257 GLN VAL HIS ASN LEU GLN PRO GLU LYS VAL GLN THR LEU SEQRES 16 A 257 GLU ALA TRP VAL ILE HIS GLY GLY ARG GLU ASP SER ARG SEQRES 17 A 257 ASP LEU CYS GLN ASP PRO THR ILE LYS GLU LEU GLU SER SEQRES 18 A 257 ILE ILE SER LYS ARG ASN ILE GLN PHE SER CYS LYS ASN SEQRES 19 A 257 ILE TYR ARG PRO ASP LYS PHE LEU GLN CYS VAL LYS ASN SEQRES 20 A 257 PRO GLU ASP SER SER CYS THR SER GLU ILE SEQRES 1 B 257 GLU PHE TRP ARG GLN THR TRP SER GLY PRO GLY THR THR SEQRES 2 B 257 LYS ARG PHE PRO GLU THR VAL LEU ALA ARG CYS VAL LYS SEQRES 3 B 257 TYR THR GLU ILE HIS PRO GLU MET ARG HIS VAL ASP CYS SEQRES 4 B 257 GLN SER VAL TRP ASP ALA PHE LYS GLY ALA PHE ILE SER SEQRES 5 B 257 LYS HIS PRO CYS ASP ILE THR GLU GLU ASP TYR GLN PRO SEQRES 6 B 257 LEU MET LYS LEU GLY THR GLN THR VAL PRO CYS ASN LYS SEQRES 7 B 257 ILE LEU LEU TRP SER ARG ILE LYS ASP LEU ALA HIS GLN SEQRES 8 B 257 PHE THR GLN VAL GLN ARG ASP MET PHE THR LEU GLU ASP SEQRES 9 B 257 THR LEU LEU GLY TYR LEU ALA ASP ASP LEU THR TRP CYS SEQRES 10 B 257 GLY GLU PHE ASP THR SER LYS ILE ASN TYR GLN SER CYS SEQRES 11 B 257 PRO ASP TRP ARG LYS ASP CYS SER ASN ASN PRO VAL SER SEQRES 12 B 257 VAL PHE TRP LYS THR VAL SER ARG ARG PHE ALA GLU ALA SEQRES 13 B 257 ALA CYS ASP VAL VAL HIS VAL MET LEU ASP GLY SER ARG SEQRES 14 B 257 SER LYS ILE PHE ASP LYS ASP SER THR PHE GLY SER VAL SEQRES 15 B 257 GLN VAL HIS ASN LEU GLN PRO GLU LYS VAL GLN THR LEU SEQRES 16 B 257 GLU ALA TRP VAL ILE HIS GLY GLY ARG GLU ASP SER ARG SEQRES 17 B 257 ASP LEU CYS GLN ASP PRO THR ILE LYS GLU LEU GLU SER SEQRES 18 B 257 ILE ILE SER LYS ARG ASN ILE GLN PHE SER CYS LYS ASN SEQRES 19 B 257 ILE TYR ARG PRO ASP LYS PHE LEU GLN CYS VAL LYS ASN SEQRES 20 B 257 PRO GLU ASP SER SER CYS THR SER GLU ILE HET DN4 A 401 48 HET DN4 B 401 48 HETNAM DN4 [[(2R,3R,4R,5R)-5-(6-AMINOPURIN-9-YL)-3-OXIDANYL-4- HETNAM 2 DN4 PHOSPHONOOXY-OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL] HETNAM 3 DN4 [(2R,3S,4R,5R)-5-(3-CARBOXYPYRIDIN-1-IUM-1-YL)-3,4- HETNAM 4 DN4 BIS(OXIDANYL)OXOLAN-2-YL]METHYL PHOSPHATE HETSYN DN4 NICOTINIC ACID ADENINE DINUCLEOTIDE PHOSPHATE FORMUL 3 DN4 2(C21 H27 N6 O18 P3) FORMUL 5 HOH *88(H2 O) HELIX 1 1 ARG A 58 HIS A 74 1 17 HELIX 2 2 PRO A 75 ARG A 78 5 4 HELIX 3 3 ASP A 81 ILE A 94 1 14 HELIX 4 4 THR A 102 ASP A 105 5 4 HELIX 5 5 TYR A 106 GLY A 113 1 8 HELIX 6 6 PRO A 118 LYS A 121 5 4 HELIX 7 7 ILE A 128 GLN A 139 1 12 HELIX 8 8 THR A 144 ASP A 147 5 4 HELIX 9 9 THR A 148 ASP A 155 1 8 HELIX 10 10 ASN A 183 ALA A 199 1 17 HELIX 11 11 SER A 220 VAL A 225 1 6 HELIX 12 12 GLN A 226 LEU A 230 5 5 HELIX 13 13 ASP A 252 GLN A 255 5 4 HELIX 14 14 ASP A 256 ARG A 269 1 14 HELIX 15 15 ARG A 280 ASN A 290 1 11 HELIX 16 16 ARG B 58 HIS B 74 1 17 HELIX 17 17 PRO B 75 VAL B 80 5 6 HELIX 18 18 ASP B 81 ILE B 94 1 14 HELIX 19 19 THR B 102 ASP B 105 5 4 HELIX 20 20 TYR B 106 GLY B 113 1 8 HELIX 21 21 PRO B 118 LYS B 121 5 4 HELIX 22 22 ILE B 128 GLN B 139 1 12 HELIX 23 23 THR B 144 ASP B 147 5 4 HELIX 24 24 THR B 148 ASP B 155 1 8 HELIX 25 25 ASN B 183 ALA B 200 1 18 HELIX 26 26 SER B 220 VAL B 225 1 6 HELIX 27 27 ASP B 252 GLN B 255 5 4 HELIX 28 28 ASP B 256 LYS B 268 1 13 HELIX 29 29 ARG B 280 ASN B 290 1 11 SHEET 1 A 2 GLY A 52 PRO A 53 0 SHEET 2 A 2 SER A 172 CYS A 173 -1 O CYS A 173 N GLY A 52 SHEET 1 B 4 LEU A 123 SER A 126 0 SHEET 2 B 4 ASP A 202 ASP A 209 1 O HIS A 205 N LEU A 124 SHEET 3 B 4 VAL A 235 ILE A 243 1 O TRP A 241 N VAL A 206 SHEET 4 B 4 GLN A 272 ILE A 278 1 O GLN A 272 N LEU A 238 SHEET 1 C 2 GLY B 52 PRO B 53 0 SHEET 2 C 2 SER B 172 CYS B 173 -1 O CYS B 173 N GLY B 52 SHEET 1 D 4 LEU B 123 SER B 126 0 SHEET 2 D 4 ASP B 202 ASP B 209 1 O HIS B 205 N LEU B 124 SHEET 3 D 4 VAL B 235 ILE B 243 1 O TRP B 241 N VAL B 206 SHEET 4 D 4 GLN B 272 ILE B 278 1 O LYS B 276 N VAL B 242 SSBOND 1 CYS A 67 CYS A 82 1555 1555 2.08 SSBOND 2 CYS A 99 CYS A 180 1555 1555 2.08 SSBOND 3 CYS A 119 CYS A 201 1555 1555 2.04 SSBOND 4 CYS A 160 CYS A 173 1555 1555 2.08 SSBOND 5 CYS A 254 CYS A 275 1555 1555 2.05 SSBOND 6 CYS A 287 CYS A 296 1555 1555 2.04 SSBOND 7 CYS B 67 CYS B 82 1555 1555 2.08 SSBOND 8 CYS B 99 CYS B 180 1555 1555 2.05 SSBOND 9 CYS B 119 CYS B 201 1555 1555 2.04 SSBOND 10 CYS B 160 CYS B 173 1555 1555 2.06 SSBOND 11 CYS B 254 CYS B 275 1555 1555 2.06 SSBOND 12 CYS B 287 CYS B 296 1555 1555 2.04 SITE 1 AC1 16 TRP A 125 SER A 126 ARG A 127 LEU A 145 SITE 2 AC1 16 GLU A 146 ASP A 155 ASP A 156 TRP A 176 SITE 3 AC1 16 TRP A 189 SER A 193 ASP A 219 SER A 220 SITE 4 AC1 16 THR A 221 PHE A 222 GLN A 226 HOH A 502 SITE 1 AC2 15 TRP B 125 SER B 126 ARG B 127 LEU B 145 SITE 2 AC2 15 GLU B 146 ASP B 155 TRP B 176 TRP B 189 SITE 3 AC2 15 SER B 193 ASP B 219 SER B 220 THR B 221 SITE 4 AC2 15 PHE B 222 GLN B 226 HOH B 501 CRYST1 41.694 54.565 63.420 109.67 91.11 93.68 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023984 0.001541 0.001047 0.00000 SCALE2 0.000000 0.018365 0.006608 0.00000 SCALE3 0.000000 0.000000 0.016761 0.00000