HEADER LYASE 10-MAY-12 4F4D TITLE F337R VARIANT OF HUMAN FERROCHELATASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERROCHELATASE, MITOCHONDRIAL; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 65-423; COMPND 5 SYNONYM: HEME SYNTHASE, PROTOHEME FERRO-LYASE; COMPND 6 EC: 4.99.1.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FECH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FERROCHELATASE, HEME BIOSYNTHESIS, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR W.N.LANZILOTTA,A.E.MEDLOCK,T.E.DAILEY,H.A.DAILEY REVDAT 3 28-FEB-24 4F4D 1 REMARK SEQADV LINK REVDAT 2 17-JUL-19 4F4D 1 REMARK REVDAT 1 12-SEP-12 4F4D 0 JRNL AUTH W.N.LANZILOTTA,A.E.MEDLOCK,T.E.DAILEY,H.A.DAILEY JRNL TITL F337R VARIANT OF HUMAN FERROCHELATASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 87465 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4339 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5931 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 323 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5782 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 190 REMARK 3 SOLVENT ATOMS : 604 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.23000 REMARK 3 B22 (A**2) : -1.11000 REMARK 3 B33 (A**2) : 2.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.109 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.218 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6385 ; 0.124 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8739 ; 2.651 ; 2.015 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 792 ; 6.993 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 285 ;34.753 ;23.474 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1141 ;16.427 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 52 ;16.915 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 996 ; 0.285 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4726 ; 0.016 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3719 ; 1.544 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6109 ; 2.482 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2666 ; 3.834 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2586 ; 5.852 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 4 REMARK 4 4F4D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000072439. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 210 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : 1.0 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 165467 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 16.00 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : 0.08500 REMARK 200 FOR THE DATA SET : 40.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS, 0.05 M AMMONIUM REMARK 280 ACETATE, 20% PENTAERYTHRITOL ETHOXYLATE (15/4 EO/OH) , PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.10500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.96450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.75550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.96450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.10500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.75550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 96 ND2 ASN B 105 1.43 REMARK 500 NH2 ARG B 253 O HOH B 721 1.50 REMARK 500 CG ARG A 65 O HOH A 733 1.78 REMARK 500 NZ LYS A 286 O HOH A 726 1.95 REMARK 500 O HOH B 719 O HOH B 720 2.06 REMARK 500 OD2 ASP B 383 O HOH B 683 2.08 REMARK 500 O25 CHD A 504 O HOH A 832 2.10 REMARK 500 O HOH A 696 O HOH A 817 2.11 REMARK 500 O HOH A 647 O HOH A 680 2.11 REMARK 500 O3 CHD B 505 O HOH B 812 2.12 REMARK 500 O HOH A 663 O HOH A 718 2.15 REMARK 500 NZ LYS B 286 O HOH B 831 2.18 REMARK 500 O3 CHD B 503 O HOH B 879 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 695 O HOH A 707 3555 1.56 REMARK 500 OE1 GLU A 149 O HOH B 787 4455 1.90 REMARK 500 O HOH B 718 O HOH B 724 3655 2.04 REMARK 500 O HOH B 851 O HOH B 866 3645 2.05 REMARK 500 O HOH B 719 O HOH B 723 3655 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 66 N LYS A 66 CA 0.180 REMARK 500 ARG A 114 CG ARG A 114 CD 0.197 REMARK 500 VAL A 144 CB VAL A 144 CG2 0.132 REMARK 500 TYR A 209 CD1 TYR A 209 CE1 0.099 REMARK 500 TYR A 297 CE2 TYR A 297 CD2 0.129 REMARK 500 LYS A 397 CD LYS A 397 CE -0.156 REMARK 500 VAL B 280 CB VAL B 280 CG2 0.148 REMARK 500 TYR B 297 CE2 TYR B 297 CD2 0.104 REMARK 500 GLU B 393 CG GLU B 393 CD 0.098 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 67 C - N - CA ANGL. DEV. = -10.0 DEGREES REMARK 500 ARG A 91 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 125 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 125 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 MET A 219 CG - SD - CE ANGL. DEV. = -11.6 DEGREES REMARK 500 ARG A 226 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG A 226 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG A 272 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ASP A 316 CB - CG - OD2 ANGL. DEV. = 8.6 DEGREES REMARK 500 ARG A 337 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 337 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG A 366 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 LEU B 92 CA - CB - CG ANGL. DEV. = 23.3 DEGREES REMARK 500 ARG B 226 NE - CZ - NH1 ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG B 226 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ASP B 246 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG B 253 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG B 253 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 272 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ASP B 316 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 GLU B 343 OE1 - CD - OE2 ANGL. DEV. = 7.6 DEGREES REMARK 500 GLU B 343 CG - CD - OE1 ANGL. DEV. = -12.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 66 -124.64 -122.03 REMARK 500 ILE A 103 55.43 32.08 REMARK 500 THR A 198 -87.19 -117.34 REMARK 500 TRP A 227 56.90 -166.91 REMARK 500 TYR A 346 -61.91 -102.47 REMARK 500 ASN A 372 -113.11 42.30 REMARK 500 ASN A 392 16.86 58.69 REMARK 500 THR B 198 -85.06 -113.28 REMARK 500 TRP B 227 51.41 -165.14 REMARK 500 TYR B 346 -60.91 -100.16 REMARK 500 ASN B 372 -118.05 45.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 503 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 196 SG REMARK 620 2 FES A 503 S1 114.3 REMARK 620 3 FES A 503 S2 112.0 104.0 REMARK 620 4 CYS A 403 SG 94.8 112.4 119.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 503 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 406 SG REMARK 620 2 FES A 503 S1 116.0 REMARK 620 3 FES A 503 S2 111.6 103.5 REMARK 620 4 CYS A 411 SG 100.1 106.8 119.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 502 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 196 SG REMARK 620 2 FES B 502 S1 115.2 REMARK 620 3 FES B 502 S2 112.1 104.7 REMARK 620 4 CYS B 403 SG 94.3 112.2 118.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 502 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 406 SG REMARK 620 2 FES B 502 S1 114.7 REMARK 620 3 FES B 502 S2 113.1 102.6 REMARK 620 4 CYS B 411 SG 100.7 106.2 119.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CHD A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CHD A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CHD A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CHD B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CHD B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CHD B 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4F4G RELATED DB: PDB DBREF 4F4D A 65 423 UNP P22830 HEMH_HUMAN 65 423 DBREF 4F4D B 65 423 UNP P22830 HEMH_HUMAN 65 423 SEQADV 4F4D ARG A 337 UNP P22830 PHE 337 ENGINEERED MUTATION SEQADV 4F4D ARG B 337 UNP P22830 PHE 337 ENGINEERED MUTATION SEQRES 1 A 359 ARG LYS PRO LYS THR GLY ILE LEU MET LEU ASN MET GLY SEQRES 2 A 359 GLY PRO GLU THR LEU GLY ASP VAL HIS ASP PHE LEU LEU SEQRES 3 A 359 ARG LEU PHE LEU ASP ARG ASP LEU MET THR LEU PRO ILE SEQRES 4 A 359 GLN ASN LYS LEU ALA PRO PHE ILE ALA LYS ARG ARG THR SEQRES 5 A 359 PRO LYS ILE GLN GLU GLN TYR ARG ARG ILE GLY GLY GLY SEQRES 6 A 359 SER PRO ILE LYS ILE TRP THR SER LYS GLN GLY GLU GLY SEQRES 7 A 359 MET VAL LYS LEU LEU ASP GLU LEU SER PRO ASN THR ALA SEQRES 8 A 359 PRO HIS LYS TYR TYR ILE GLY PHE ARG TYR VAL HIS PRO SEQRES 9 A 359 LEU THR GLU GLU ALA ILE GLU GLU MET GLU ARG ASP GLY SEQRES 10 A 359 LEU GLU ARG ALA ILE ALA PHE THR GLN TYR PRO GLN TYR SEQRES 11 A 359 SER CYS SER THR THR GLY SER SER LEU ASN ALA ILE TYR SEQRES 12 A 359 ARG TYR TYR ASN GLN VAL GLY ARG LYS PRO THR MET LYS SEQRES 13 A 359 TRP SER THR ILE ASP ARG TRP PRO THR HIS HIS LEU LEU SEQRES 14 A 359 ILE GLN CYS PHE ALA ASP HIS ILE LEU LYS GLU LEU ASP SEQRES 15 A 359 HIS PHE PRO LEU GLU LYS ARG SER GLU VAL VAL ILE LEU SEQRES 16 A 359 PHE SER ALA HIS SER LEU PRO MET SER VAL VAL ASN ARG SEQRES 17 A 359 GLY ASP PRO TYR PRO GLN GLU VAL SER ALA THR VAL GLN SEQRES 18 A 359 LYS VAL MET GLU ARG LEU GLU TYR CYS ASN PRO TYR ARG SEQRES 19 A 359 LEU VAL TRP GLN SER LYS VAL GLY PRO MET PRO TRP LEU SEQRES 20 A 359 GLY PRO GLN THR ASP GLU SER ILE LYS GLY LEU CYS GLU SEQRES 21 A 359 ARG GLY ARG LYS ASN ILE LEU LEU VAL PRO ILE ALA ARG SEQRES 22 A 359 THR SER ASP HIS ILE GLU THR LEU TYR GLU LEU ASP ILE SEQRES 23 A 359 GLU TYR SER GLN VAL LEU ALA LYS GLU CYS GLY VAL GLU SEQRES 24 A 359 ASN ILE ARG ARG ALA GLU SER LEU ASN GLY ASN PRO LEU SEQRES 25 A 359 PHE SER LYS ALA LEU ALA ASP LEU VAL HIS SER HIS ILE SEQRES 26 A 359 GLN SER ASN GLU LEU CYS SER LYS GLN LEU THR LEU SER SEQRES 27 A 359 CYS PRO LEU CYS VAL ASN PRO VAL CYS ARG GLU THR LYS SEQRES 28 A 359 SER PHE PHE THR SER GLN GLN LEU SEQRES 1 B 359 ARG LYS PRO LYS THR GLY ILE LEU MET LEU ASN MET GLY SEQRES 2 B 359 GLY PRO GLU THR LEU GLY ASP VAL HIS ASP PHE LEU LEU SEQRES 3 B 359 ARG LEU PHE LEU ASP ARG ASP LEU MET THR LEU PRO ILE SEQRES 4 B 359 GLN ASN LYS LEU ALA PRO PHE ILE ALA LYS ARG ARG THR SEQRES 5 B 359 PRO LYS ILE GLN GLU GLN TYR ARG ARG ILE GLY GLY GLY SEQRES 6 B 359 SER PRO ILE LYS ILE TRP THR SER LYS GLN GLY GLU GLY SEQRES 7 B 359 MET VAL LYS LEU LEU ASP GLU LEU SER PRO ASN THR ALA SEQRES 8 B 359 PRO HIS LYS TYR TYR ILE GLY PHE ARG TYR VAL HIS PRO SEQRES 9 B 359 LEU THR GLU GLU ALA ILE GLU GLU MET GLU ARG ASP GLY SEQRES 10 B 359 LEU GLU ARG ALA ILE ALA PHE THR GLN TYR PRO GLN TYR SEQRES 11 B 359 SER CYS SER THR THR GLY SER SER LEU ASN ALA ILE TYR SEQRES 12 B 359 ARG TYR TYR ASN GLN VAL GLY ARG LYS PRO THR MET LYS SEQRES 13 B 359 TRP SER THR ILE ASP ARG TRP PRO THR HIS HIS LEU LEU SEQRES 14 B 359 ILE GLN CYS PHE ALA ASP HIS ILE LEU LYS GLU LEU ASP SEQRES 15 B 359 HIS PHE PRO LEU GLU LYS ARG SER GLU VAL VAL ILE LEU SEQRES 16 B 359 PHE SER ALA HIS SER LEU PRO MET SER VAL VAL ASN ARG SEQRES 17 B 359 GLY ASP PRO TYR PRO GLN GLU VAL SER ALA THR VAL GLN SEQRES 18 B 359 LYS VAL MET GLU ARG LEU GLU TYR CYS ASN PRO TYR ARG SEQRES 19 B 359 LEU VAL TRP GLN SER LYS VAL GLY PRO MET PRO TRP LEU SEQRES 20 B 359 GLY PRO GLN THR ASP GLU SER ILE LYS GLY LEU CYS GLU SEQRES 21 B 359 ARG GLY ARG LYS ASN ILE LEU LEU VAL PRO ILE ALA ARG SEQRES 22 B 359 THR SER ASP HIS ILE GLU THR LEU TYR GLU LEU ASP ILE SEQRES 23 B 359 GLU TYR SER GLN VAL LEU ALA LYS GLU CYS GLY VAL GLU SEQRES 24 B 359 ASN ILE ARG ARG ALA GLU SER LEU ASN GLY ASN PRO LEU SEQRES 25 B 359 PHE SER LYS ALA LEU ALA ASP LEU VAL HIS SER HIS ILE SEQRES 26 B 359 GLN SER ASN GLU LEU CYS SER LYS GLN LEU THR LEU SER SEQRES 27 B 359 CYS PRO LEU CYS VAL ASN PRO VAL CYS ARG GLU THR LYS SEQRES 28 B 359 SER PHE PHE THR SER GLN GLN LEU HET CL A 501 1 HET GOL A 502 12 HET FES A 503 4 HET CHD A 504 29 HET CHD A 505 29 HET CHD A 506 29 HET CL B 501 1 HET FES B 502 4 HET CHD B 503 29 HET CHD B 504 29 HET CHD B 505 29 HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM CHD CHOLIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CL 2(CL 1-) FORMUL 4 GOL C3 H8 O3 FORMUL 5 FES 2(FE2 S2) FORMUL 6 CHD 6(C24 H40 O5) FORMUL 14 HOH *604(H2 O) HELIX 1 1 THR A 81 GLY A 83 5 3 HELIX 2 2 ASP A 84 LEU A 94 1 11 HELIX 3 3 ILE A 103 ILE A 126 1 24 HELIX 4 4 PRO A 131 SER A 151 1 21 HELIX 5 5 PRO A 152 ALA A 155 5 4 HELIX 6 6 LEU A 169 ASP A 180 1 12 HELIX 7 7 THR A 198 GLY A 214 1 17 HELIX 8 8 HIS A 230 ASP A 246 1 17 HELIX 9 9 HIS A 247 PHE A 248 5 2 HELIX 10 10 PRO A 249 VAL A 256 5 8 HELIX 11 11 PRO A 266 ASN A 271 1 6 HELIX 12 12 PRO A 275 LEU A 291 1 17 HELIX 13 13 GLN A 314 ARG A 325 1 12 HELIX 14 14 HIS A 341 TYR A 346 1 6 HELIX 15 15 GLN A 354 CYS A 360 1 7 HELIX 16 16 ASN A 374 ASN A 392 1 19 HELIX 17 17 SER A 396 LEU A 401 5 6 HELIX 18 18 PRO A 409 SER A 420 1 12 HELIX 19 19 THR B 81 GLY B 83 5 3 HELIX 20 20 ASP B 84 LEU B 94 1 11 HELIX 21 21 ILE B 103 ILE B 126 1 24 HELIX 22 22 PRO B 131 SER B 151 1 21 HELIX 23 23 PRO B 152 ALA B 155 5 4 HELIX 24 24 LEU B 169 ASP B 180 1 12 HELIX 25 25 THR B 198 GLY B 214 1 17 HELIX 26 26 HIS B 230 ASP B 246 1 17 HELIX 27 27 HIS B 247 PHE B 248 5 2 HELIX 28 28 PRO B 249 VAL B 256 5 8 HELIX 29 29 PRO B 266 ASN B 271 1 6 HELIX 30 30 PRO B 275 LEU B 291 1 17 HELIX 31 31 GLN B 314 ARG B 325 1 12 HELIX 32 32 HIS B 341 TYR B 346 1 6 HELIX 33 33 GLN B 354 GLY B 361 1 8 HELIX 34 34 ASN B 374 ASN B 392 1 19 HELIX 35 35 SER B 396 LEU B 401 5 6 HELIX 36 36 PRO B 409 SER B 420 1 12 SHEET 1 A 4 HIS A 157 PHE A 163 0 SHEET 2 A 4 THR A 69 ASN A 75 1 N MET A 73 O TYR A 160 SHEET 3 A 4 ARG A 184 THR A 189 1 O PHE A 188 N LEU A 72 SHEET 4 A 4 LYS A 220 ILE A 224 1 O SER A 222 N ALA A 187 SHEET 1 B 4 TYR A 297 GLN A 302 0 SHEET 2 B 4 VAL A 257 HIS A 263 1 N PHE A 260 O VAL A 300 SHEET 3 B 4 ASN A 329 PRO A 334 1 O LEU A 331 N LEU A 259 SHEET 4 B 4 ASN A 364 ARG A 367 1 O ARG A 366 N LEU A 332 SHEET 1 C 4 HIS B 157 PHE B 163 0 SHEET 2 C 4 THR B 69 ASN B 75 1 N MET B 73 O TYR B 160 SHEET 3 C 4 ARG B 184 THR B 189 1 O PHE B 188 N LEU B 72 SHEET 4 C 4 LYS B 220 ILE B 224 1 O SER B 222 N ALA B 187 SHEET 1 D 4 TYR B 297 GLN B 302 0 SHEET 2 D 4 VAL B 257 HIS B 263 1 N PHE B 260 O VAL B 300 SHEET 3 D 4 ASN B 329 PRO B 334 1 O LEU B 331 N LEU B 259 SHEET 4 D 4 ASN B 364 ARG B 367 1 O ARG B 366 N LEU B 332 LINK SG CYS A 196 FE2 FES A 503 1555 1555 2.35 LINK SG CYS A 403 FE2 FES A 503 1555 1555 2.36 LINK SG CYS A 406 FE1 FES A 503 1555 1555 2.36 LINK SG CYS A 411 FE1 FES A 503 1555 1555 2.34 LINK SG CYS B 196 FE2 FES B 502 1555 1555 2.35 LINK SG CYS B 403 FE2 FES B 502 1555 1555 2.35 LINK SG CYS B 406 FE1 FES B 502 1555 1555 2.34 LINK SG CYS B 411 FE1 FES B 502 1555 1555 2.35 CISPEP 1 ALA A 155 PRO A 156 0 -0.48 CISPEP 2 HIS A 167 PRO A 168 0 -11.70 CISPEP 3 GLY A 312 PRO A 313 0 9.04 CISPEP 4 ALA B 155 PRO B 156 0 -2.65 CISPEP 5 HIS B 167 PRO B 168 0 -6.27 CISPEP 6 GLY B 312 PRO B 313 0 4.21 SITE 1 AC1 4 TYR A 123 SER A 130 ILE A 132 ILE A 342 SITE 1 AC2 10 PRO A 277 GLN A 278 SER A 281 TRP A 301 SITE 2 AC2 10 HOH A 604 HOH A 678 PRO B 277 GLN B 278 SITE 3 AC2 10 SER B 281 TRP B 301 SITE 1 AC3 6 CYS A 196 ARG A 272 SER A 402 CYS A 403 SITE 2 AC3 6 CYS A 406 CYS A 411 SITE 1 AC4 13 LEU A 89 LEU A 92 LEU A 98 ARG A 115 SITE 2 AC4 13 GLN A 122 HIS A 263 VAL A 305 HOH A 674 SITE 3 AC4 13 HOH A 691 HOH A 704 HOH A 735 HOH A 832 SITE 4 AC4 13 HOH A 844 SITE 1 AC5 11 MET A 99 ARG A 114 ARG A 115 VAL A 305 SITE 2 AC5 11 MET A 308 TRP A 310 CHD A 506 HOH A 705 SITE 3 AC5 11 HOH A 724 HOH A 771 HOH A 871 SITE 1 AC6 4 THR A 100 CHD A 505 HOH A 880 PHE B 110 SITE 1 AC7 4 TYR B 123 SER B 130 ILE B 132 ILE B 342 SITE 1 AC8 6 CYS B 196 ARG B 272 SER B 402 CYS B 403 SITE 2 AC8 6 CYS B 406 CYS B 411 SITE 1 AC9 11 MET B 99 ILE B 111 ARG B 114 ARG B 115 SITE 2 AC9 11 PRO B 266 MET B 308 CHD B 504 CHD B 505 SITE 3 AC9 11 HOH B 740 HOH B 855 HOH B 879 SITE 1 BC1 4 LYS A 106 PHE A 110 THR B 100 CHD B 503 SITE 1 BC2 15 LEU B 98 ARG B 115 LYS B 118 ILE B 119 SITE 2 BC2 15 SER B 197 THR B 198 HIS B 263 VAL B 305 SITE 3 BC2 15 CHD B 503 HOH B 746 HOH B 795 HOH B 812 SITE 4 BC2 15 HOH B 837 HOH B 852 HOH B 859 CRYST1 88.210 93.511 111.929 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011337 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010694 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008934 0.00000