data_4F54 # _entry.id 4F54 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4F54 pdb_00004f54 10.2210/pdb4f54/pdb RCSB RCSB072466 ? ? WWPDB D_1000072466 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-392956 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4F54 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-05-11 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a hypothetical protein (BT2437) from Bacteroides thetaiotaomicron VPI-5482 at 1.60 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 4F54 _cell.length_a 78.402 _cell.length_b 111.907 _cell.length_c 53.588 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4F54 _symmetry.Int_Tables_number 20 _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized protein' 22890.807 1 ? ? 'UNP residues 15-209' ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 4 water nat water 18.015 243 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GASCE(MLY)DPD(MSE)G(MLY)LDDNYLVYTNYD(MLY)QANF(MLY)DFSTFYLAD(MLY)ILVISDS(MLY)EPEY LEGEGAEQILAAYTEN(MSE)EA(MLY)GYQPAAD(MLY)ESADLGIQVSYIASTYYFTGYTQPEWWWGYPGYWGPSYWG NWGGWYYPYAVTYSYSTNSFITE(MSE)VNL(MLY)ADEGEG(MLY)(MLY)LPVVWTSYLTGFETGS(MLY)AINRTLA IEAVNQSFTQSPYLTN(MLY) ; _entity_poly.pdbx_seq_one_letter_code_can ;GASCEKDPDMGKLDDNYLVYTNYDKQANFKDFSTFYLADKILVISDSKEPEYLEGEGAEQILAAYTENMEAKGYQPAADK ESADLGIQVSYIASTYYFTGYTQPEWWWGYPGYWGPSYWGNWGGWYYPYAVTYSYSTNSFITEMVNLKADEGEGKKLPVV WTSYLTGFETGSKAINRTLAIEAVNQSFTQSPYLTNK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier JCSG-392956 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 SER n 1 4 CYS n 1 5 GLU n 1 6 MLY n 1 7 ASP n 1 8 PRO n 1 9 ASP n 1 10 MSE n 1 11 GLY n 1 12 MLY n 1 13 LEU n 1 14 ASP n 1 15 ASP n 1 16 ASN n 1 17 TYR n 1 18 LEU n 1 19 VAL n 1 20 TYR n 1 21 THR n 1 22 ASN n 1 23 TYR n 1 24 ASP n 1 25 MLY n 1 26 GLN n 1 27 ALA n 1 28 ASN n 1 29 PHE n 1 30 MLY n 1 31 ASP n 1 32 PHE n 1 33 SER n 1 34 THR n 1 35 PHE n 1 36 TYR n 1 37 LEU n 1 38 ALA n 1 39 ASP n 1 40 MLY n 1 41 ILE n 1 42 LEU n 1 43 VAL n 1 44 ILE n 1 45 SER n 1 46 ASP n 1 47 SER n 1 48 MLY n 1 49 GLU n 1 50 PRO n 1 51 GLU n 1 52 TYR n 1 53 LEU n 1 54 GLU n 1 55 GLY n 1 56 GLU n 1 57 GLY n 1 58 ALA n 1 59 GLU n 1 60 GLN n 1 61 ILE n 1 62 LEU n 1 63 ALA n 1 64 ALA n 1 65 TYR n 1 66 THR n 1 67 GLU n 1 68 ASN n 1 69 MSE n 1 70 GLU n 1 71 ALA n 1 72 MLY n 1 73 GLY n 1 74 TYR n 1 75 GLN n 1 76 PRO n 1 77 ALA n 1 78 ALA n 1 79 ASP n 1 80 MLY n 1 81 GLU n 1 82 SER n 1 83 ALA n 1 84 ASP n 1 85 LEU n 1 86 GLY n 1 87 ILE n 1 88 GLN n 1 89 VAL n 1 90 SER n 1 91 TYR n 1 92 ILE n 1 93 ALA n 1 94 SER n 1 95 THR n 1 96 TYR n 1 97 TYR n 1 98 PHE n 1 99 THR n 1 100 GLY n 1 101 TYR n 1 102 THR n 1 103 GLN n 1 104 PRO n 1 105 GLU n 1 106 TRP n 1 107 TRP n 1 108 TRP n 1 109 GLY n 1 110 TYR n 1 111 PRO n 1 112 GLY n 1 113 TYR n 1 114 TRP n 1 115 GLY n 1 116 PRO n 1 117 SER n 1 118 TYR n 1 119 TRP n 1 120 GLY n 1 121 ASN n 1 122 TRP n 1 123 GLY n 1 124 GLY n 1 125 TRP n 1 126 TYR n 1 127 TYR n 1 128 PRO n 1 129 TYR n 1 130 ALA n 1 131 VAL n 1 132 THR n 1 133 TYR n 1 134 SER n 1 135 TYR n 1 136 SER n 1 137 THR n 1 138 ASN n 1 139 SER n 1 140 PHE n 1 141 ILE n 1 142 THR n 1 143 GLU n 1 144 MSE n 1 145 VAL n 1 146 ASN n 1 147 LEU n 1 148 MLY n 1 149 ALA n 1 150 ASP n 1 151 GLU n 1 152 GLY n 1 153 GLU n 1 154 GLY n 1 155 MLY n 1 156 MLY n 1 157 LEU n 1 158 PRO n 1 159 VAL n 1 160 VAL n 1 161 TRP n 1 162 THR n 1 163 SER n 1 164 TYR n 1 165 LEU n 1 166 THR n 1 167 GLY n 1 168 PHE n 1 169 GLU n 1 170 THR n 1 171 GLY n 1 172 SER n 1 173 MLY n 1 174 ALA n 1 175 ILE n 1 176 ASN n 1 177 ARG n 1 178 THR n 1 179 LEU n 1 180 ALA n 1 181 ILE n 1 182 GLU n 1 183 ALA n 1 184 VAL n 1 185 ASN n 1 186 GLN n 1 187 SER n 1 188 PHE n 1 189 THR n 1 190 GLN n 1 191 SER n 1 192 PRO n 1 193 TYR n 1 194 LEU n 1 195 THR n 1 196 ASN n 1 197 MLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BT_2437 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides thetaiotaomicron' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 226186 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8A510_BACTN _struct_ref.pdbx_db_accession Q8A510 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ASCEKDPDMGKLDDNYLVYTNYDKQANFKDFSTFYLADKILVISDSKEPEYLEGEGAEQILAAYTENMEAKGYQPAADKE SADLGIQVSYIASTYYFTGYTQPEWWWGYPGYWGPSYWGNWGGWYYPYAVTYSYSTNSFITEMVNLKADEGEGKKLPVVW TSYLTGFETGSKAINRTLAIEAVNQSFTQSPYLTNK ; _struct_ref.pdbx_align_begin 15 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4F54 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 197 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8A510 _struct_ref_seq.db_align_beg 15 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 210 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 15 _struct_ref_seq.pdbx_auth_seq_align_end 210 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4F54 _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q8A510 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MLY 'L-peptide linking' n N-DIMETHYL-LYSINE ? 'C8 H18 N2 O2' 174.241 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4F54 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.57 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 52.09 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '2.00M ammonium sulfate, 0.1M tris hydrochloride pH 8.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Vertical focusing mirror; double crystal Si(111) monochromator' _diffrn_detector.pdbx_collection_date 2012-04-11 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL14-1 _diffrn_source.type 'SSRL BEAMLINE BL14-1' _diffrn_source.pdbx_wavelength 0.9792 _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 4F54 _reflns.d_resolution_high 1.60 _reflns.d_resolution_low 33.684 _reflns.number_all 30584 _reflns.number_obs 30584 _reflns.pdbx_netI_over_sigmaI 8.800 _reflns.pdbx_Rsym_value 0.067 _reflns.pdbx_redundancy 4.100 _reflns.percent_possible_obs 97.100 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.pdbx_Rmerge_I_obs ? _reflns.B_iso_Wilson_estimate 20.941 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.600 1.690 ? 18233 ? 0.761 1.0 0.761 ? 4.100 ? 4496 99.300 1 1 1.690 1.790 ? 17460 ? 0.502 1.5 0.502 ? 4.100 ? 4292 99.500 2 1 1.790 1.910 ? 16119 ? 0.422 1.7 0.422 ? 4.100 ? 3962 98.100 3 1 1.910 2.070 ? 14661 ? 0.213 3.3 0.213 ? 4.100 ? 3576 94.200 4 1 2.070 2.260 ? 12495 ? 0.133 4.9 0.133 ? 4.000 ? 3132 90.400 5 1 2.260 2.530 ? 12962 ? 0.100 6.9 0.100 ? 4.100 ? 3173 99.900 6 1 2.530 2.920 ? 11518 ? 0.067 10.0 0.067 ? 4.100 ? 2800 100.000 7 1 2.920 3.580 ? 9855 ? 0.041 15.7 0.041 ? 4.100 ? 2411 100.000 8 1 3.580 5.060 ? 6662 ? 0.030 20.2 0.030 ? 4.000 ? 1658 88.500 9 1 5.060 33.684 ? 4186 ? 0.029 19.8 0.029 ? 3.900 ? 1084 99.000 10 1 # _refine.entry_id 4F54 _refine.ls_d_res_high 1.6000 _refine.ls_d_res_low 33.684 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 95.2100 _refine.ls_number_reflns_obs 30002 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. 3. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. 5. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 6. SULFATE AND CHLORIDE IONS FROM THE CRYSTALLIZATION/PURIFICATION SOLUTION ARE MODELED. 7. LYSINE RESIDUES WERE REDUCTIVELY METHYLATED PRIOR TO CRYSTALLIZATION. THEY ARE MODELED AS N-DIMETHYL-LYSINE (MLY). ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1685 _refine.ls_R_factor_R_work 0.1669 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1994 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_number_reflns_R_free 1514 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 29.0772 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 1.8100 _refine.aniso_B[2][2] -0.5400 _refine.aniso_B[3][3] -1.2600 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9690 _refine.correlation_coeff_Fo_to_Fc_free 0.9590 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.0800 _refine.pdbx_overall_ESU_R_Free 0.0830 _refine.overall_SU_ML 0.0590 _refine.overall_SU_B 3.2890 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 108.340 _refine.B_iso_min 15.360 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.300 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1496 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 243 _refine_hist.number_atoms_total 1751 _refine_hist.d_res_high 1.6000 _refine_hist.d_res_low 33.684 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1604 0.015 0.020 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1005 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2213 1.672 1.970 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 2456 0.970 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 198 6.045 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 76 32.709 25.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 188 10.970 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 1 16.386 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 234 0.100 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1814 0.009 0.021 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 355 0.002 0.020 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.6000 _refine_ls_shell.d_res_low 1.6410 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 98.9800 _refine_ls_shell.number_reflns_R_work 2041 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2520 _refine_ls_shell.R_factor_R_free 0.2850 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 95 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2136 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.title 'Crystal structure of a DUF4136 family protein (BT2437) from Bacteroides thetaiotaomicron VPI-5482 at 1.60 A resolution' _struct.entry_id 4F54 _struct.pdbx_model_type_details ? _struct.pdbx_model_details ? _struct.pdbx_CASP_flag Y # _struct_keywords.text ;PF13590 family protein, DUF4136, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION ; _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.entry_id 4F54 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details 'CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 28 ? PHE A 32 ? ASN A 41 PHE A 45 5 ? 5 HELX_P HELX_P2 2 GLY A 55 ? MLY A 72 ? GLY A 68 MLY A 85 1 ? 18 HELX_P HELX_P3 3 GLU A 105 ? TYR A 110 ? GLU A 118 TYR A 123 5 ? 6 HELX_P HELX_P4 4 GLY A 115 ? GLY A 120 ? GLY A 128 GLY A 133 1 ? 6 HELX_P HELX_P5 5 GLY A 171 ? ARG A 177 ? GLY A 184 ARG A 190 1 ? 7 HELX_P HELX_P6 6 THR A 178 ? GLN A 190 ? THR A 191 GLN A 203 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ASP 24 C ? ? ? 1_555 A MLY 25 N ? ? A ASP 37 A MLY 38 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale2 covale both ? A MLY 25 C ? ? ? 1_555 A GLN 26 N ? ? A MLY 38 A GLN 39 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale3 covale both ? A PHE 29 C ? ? ? 1_555 A MLY 30 N ? ? A PHE 42 A MLY 43 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale4 covale both ? A MLY 30 C ? ? ? 1_555 A ASP 31 N ? ? A MLY 43 A ASP 44 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale5 covale both ? A ASP 39 C ? ? ? 1_555 A MLY 40 N ? ? A ASP 52 A MLY 53 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale6 covale both ? A MLY 40 C ? ? ? 1_555 A ILE 41 N ? ? A MLY 53 A ILE 54 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale7 covale both ? A SER 47 C ? ? ? 1_555 A MLY 48 N ? ? A SER 60 A MLY 61 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale8 covale both ? A MLY 48 C ? ? ? 1_555 A GLU 49 N ? ? A MLY 61 A GLU 62 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale9 covale both ? A ASN 68 C ? ? ? 1_555 A MSE 69 N ? ? A ASN 81 A MSE 82 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale10 covale both ? A MSE 69 C ? ? ? 1_555 A GLU 70 N ? ? A MSE 82 A GLU 83 1_555 ? ? ? ? ? ? ? 1.311 ? ? covale11 covale both ? A ALA 71 C ? ? ? 1_555 A MLY 72 N ? ? A ALA 84 A MLY 85 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale12 covale both ? A MLY 72 C ? ? ? 1_555 A GLY 73 N ? ? A MLY 85 A GLY 86 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale13 covale both ? A ASP 79 C ? ? ? 1_555 A MLY 80 N ? ? A ASP 92 A MLY 93 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale14 covale both ? A MLY 80 C ? ? ? 1_555 A GLU 81 N ? ? A MLY 93 A GLU 94 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale15 covale both ? A GLU 143 C ? ? ? 1_555 A MSE 144 N ? ? A GLU 156 A MSE 157 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale16 covale both ? A MSE 144 C ? ? ? 1_555 A VAL 145 N ? ? A MSE 157 A VAL 158 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale17 covale both ? A LEU 147 C ? ? ? 1_555 A MLY 148 N ? ? A LEU 160 A MLY 161 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale18 covale both ? A MLY 148 C ? ? ? 1_555 A ALA 149 N ? ? A MLY 161 A ALA 162 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale19 covale both ? A GLY 154 C ? ? ? 1_555 A MLY 155 N ? ? A GLY 167 A MLY 168 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale20 covale both ? A MLY 155 C ? ? ? 1_555 A MLY 156 N ? ? A MLY 168 A MLY 169 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale21 covale both ? A MLY 156 C ? ? ? 1_555 A LEU 157 N ? ? A MLY 169 A LEU 170 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale22 covale both ? A SER 172 C ? ? ? 1_555 A MLY 173 N ? ? A SER 185 A MLY 186 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale23 covale both ? A MLY 173 C ? ? ? 1_555 A ALA 174 N ? ? A MLY 186 A ALA 187 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale24 covale both ? A ASN 196 C ? ? ? 1_555 A MLY 197 N ? ? A ASN 209 A MLY 210 1_555 ? ? ? ? ? ? ? 1.330 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel A 5 6 ? parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 18 ? TYR A 23 ? LEU A 31 TYR A 36 A 2 MLY A 156 ? THR A 166 ? MLY A 169 THR A 179 A 3 SER A 139 ? ASN A 146 ? SER A 152 ASN A 159 A 4 LEU A 85 ? ILE A 92 ? LEU A 98 ILE A 105 A 5 THR A 34 ? LEU A 37 ? THR A 47 LEU A 50 A 6 GLN A 75 ? PRO A 76 ? GLN A 88 PRO A 89 B 1 GLU A 51 ? TYR A 52 ? GLU A 64 TYR A 65 B 2 LEU A 42 ? ILE A 44 ? LEU A 55 ILE A 57 B 3 LEU A 85 ? ILE A 92 ? LEU A 98 ILE A 105 B 4 SER A 139 ? ASN A 146 ? SER A 152 ASN A 159 B 5 MLY A 156 ? THR A 166 ? MLY A 169 THR A 179 B 6 GLY A 124 ? TYR A 126 ? GLY A 137 TYR A 139 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 18 ? N LEU A 31 O THR A 166 ? O THR A 179 A 2 3 O VAL A 160 ? O VAL A 173 N MSE A 144 ? N MSE A 157 A 3 4 O SER A 139 ? O SER A 152 N ILE A 92 ? N ILE A 105 A 4 5 O LEU A 85 ? O LEU A 98 N TYR A 36 ? N TYR A 49 A 5 6 N PHE A 35 ? N PHE A 48 O GLN A 75 ? O GLN A 88 B 1 2 O GLU A 51 ? O GLU A 64 N VAL A 43 ? N VAL A 56 B 2 3 N LEU A 42 ? N LEU A 55 O TYR A 91 ? O TYR A 104 B 3 4 N ILE A 92 ? N ILE A 105 O SER A 139 ? O SER A 152 B 4 5 N MSE A 144 ? N MSE A 157 O VAL A 160 ? O VAL A 173 B 5 6 O LEU A 157 ? O LEU A 170 N GLY A 124 ? N GLY A 137 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 302 ? 8 'BINDING SITE FOR RESIDUE SO4 A 302' AC2 Software A SO4 303 ? 3 'BINDING SITE FOR RESIDUE SO4 A 303' AC3 Software A CL 304 ? 2 'BINDING SITE FOR RESIDUE CL A 304' AC4 Software A CL 305 ? 1 'BINDING SITE FOR RESIDUE CL A 305' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 TYR A 36 ? TYR A 49 . ? 1_555 ? 2 AC1 8 ASP A 39 ? ASP A 52 . ? 1_555 ? 3 AC1 8 MLY A 40 ? MLY A 53 . ? 1_555 ? 4 AC1 8 MLY A 80 ? MLY A 93 . ? 1_555 ? 5 AC1 8 TYR A 118 ? TYR A 131 . ? 1_555 ? 6 AC1 8 HOH F . ? HOH A 553 . ? 1_555 ? 7 AC1 8 HOH F . ? HOH A 591 . ? 1_555 ? 8 AC1 8 HOH F . ? HOH A 627 . ? 1_555 ? 9 AC2 3 ASP A 79 ? ASP A 92 . ? 1_555 ? 10 AC2 3 MLY A 80 ? MLY A 93 . ? 1_555 ? 11 AC2 3 GLU A 81 ? GLU A 94 . ? 1_555 ? 12 AC3 2 ASP A 46 ? ASP A 59 . ? 6_554 ? 13 AC3 2 ALA A 130 ? ALA A 143 . ? 1_555 ? 14 AC4 1 GLU A 151 ? GLU A 164 . ? 1_555 ? # _atom_sites.entry_id 4F54 _atom_sites.fract_transf_matrix[1][1] 0.012755 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008936 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018661 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 ALA 2 15 ? ? ? A . n A 1 3 SER 3 16 ? ? ? A . n A 1 4 CYS 4 17 ? ? ? A . n A 1 5 GLU 5 18 ? ? ? A . n A 1 6 MLY 6 19 ? ? ? A . n A 1 7 ASP 7 20 ? ? ? A . n A 1 8 PRO 8 21 ? ? ? A . n A 1 9 ASP 9 22 ? ? ? A . n A 1 10 MSE 10 23 ? ? ? A . n A 1 11 GLY 11 24 ? ? ? A . n A 1 12 MLY 12 25 ? ? ? A . n A 1 13 LEU 13 26 ? ? ? A . n A 1 14 ASP 14 27 27 ASP ASP A . n A 1 15 ASP 15 28 28 ASP ASP A . n A 1 16 ASN 16 29 29 ASN ASN A . n A 1 17 TYR 17 30 30 TYR TYR A . n A 1 18 LEU 18 31 31 LEU LEU A . n A 1 19 VAL 19 32 32 VAL VAL A . n A 1 20 TYR 20 33 33 TYR TYR A . n A 1 21 THR 21 34 34 THR THR A . n A 1 22 ASN 22 35 35 ASN ASN A . n A 1 23 TYR 23 36 36 TYR TYR A . n A 1 24 ASP 24 37 37 ASP ASP A . n A 1 25 MLY 25 38 38 MLY MLY A . n A 1 26 GLN 26 39 39 GLN GLN A . n A 1 27 ALA 27 40 40 ALA ALA A . n A 1 28 ASN 28 41 41 ASN ASN A . n A 1 29 PHE 29 42 42 PHE PHE A . n A 1 30 MLY 30 43 43 MLY MLY A . n A 1 31 ASP 31 44 44 ASP ASP A . n A 1 32 PHE 32 45 45 PHE PHE A . n A 1 33 SER 33 46 46 SER SER A . n A 1 34 THR 34 47 47 THR THR A . n A 1 35 PHE 35 48 48 PHE PHE A . n A 1 36 TYR 36 49 49 TYR TYR A . n A 1 37 LEU 37 50 50 LEU LEU A . n A 1 38 ALA 38 51 51 ALA ALA A . n A 1 39 ASP 39 52 52 ASP ASP A . n A 1 40 MLY 40 53 53 MLY MLY A . n A 1 41 ILE 41 54 54 ILE ILE A . n A 1 42 LEU 42 55 55 LEU LEU A . n A 1 43 VAL 43 56 56 VAL VAL A . n A 1 44 ILE 44 57 57 ILE ILE A . n A 1 45 SER 45 58 58 SER SER A . n A 1 46 ASP 46 59 59 ASP ASP A . n A 1 47 SER 47 60 60 SER SER A . n A 1 48 MLY 48 61 61 MLY MLY A . n A 1 49 GLU 49 62 62 GLU GLU A . n A 1 50 PRO 50 63 63 PRO PRO A . n A 1 51 GLU 51 64 64 GLU GLU A . n A 1 52 TYR 52 65 65 TYR TYR A . n A 1 53 LEU 53 66 66 LEU LEU A . n A 1 54 GLU 54 67 67 GLU GLU A . n A 1 55 GLY 55 68 68 GLY GLY A . n A 1 56 GLU 56 69 69 GLU GLU A . n A 1 57 GLY 57 70 70 GLY GLY A . n A 1 58 ALA 58 71 71 ALA ALA A . n A 1 59 GLU 59 72 72 GLU GLU A . n A 1 60 GLN 60 73 73 GLN GLN A . n A 1 61 ILE 61 74 74 ILE ILE A . n A 1 62 LEU 62 75 75 LEU LEU A . n A 1 63 ALA 63 76 76 ALA ALA A . n A 1 64 ALA 64 77 77 ALA ALA A . n A 1 65 TYR 65 78 78 TYR TYR A . n A 1 66 THR 66 79 79 THR THR A . n A 1 67 GLU 67 80 80 GLU GLU A . n A 1 68 ASN 68 81 81 ASN ASN A . n A 1 69 MSE 69 82 82 MSE MSE A . n A 1 70 GLU 70 83 83 GLU GLU A . n A 1 71 ALA 71 84 84 ALA ALA A . n A 1 72 MLY 72 85 85 MLY MLY A . n A 1 73 GLY 73 86 86 GLY GLY A . n A 1 74 TYR 74 87 87 TYR TYR A . n A 1 75 GLN 75 88 88 GLN GLN A . n A 1 76 PRO 76 89 89 PRO PRO A . n A 1 77 ALA 77 90 90 ALA ALA A . n A 1 78 ALA 78 91 91 ALA ALA A . n A 1 79 ASP 79 92 92 ASP ASP A . n A 1 80 MLY 80 93 93 MLY MLY A . n A 1 81 GLU 81 94 94 GLU GLU A . n A 1 82 SER 82 95 95 SER SER A . n A 1 83 ALA 83 96 96 ALA ALA A . n A 1 84 ASP 84 97 97 ASP ASP A . n A 1 85 LEU 85 98 98 LEU LEU A . n A 1 86 GLY 86 99 99 GLY GLY A . n A 1 87 ILE 87 100 100 ILE ILE A . n A 1 88 GLN 88 101 101 GLN GLN A . n A 1 89 VAL 89 102 102 VAL VAL A . n A 1 90 SER 90 103 103 SER SER A . n A 1 91 TYR 91 104 104 TYR TYR A . n A 1 92 ILE 92 105 105 ILE ILE A . n A 1 93 ALA 93 106 106 ALA ALA A . n A 1 94 SER 94 107 107 SER SER A . n A 1 95 THR 95 108 108 THR THR A . n A 1 96 TYR 96 109 109 TYR TYR A . n A 1 97 TYR 97 110 110 TYR TYR A . n A 1 98 PHE 98 111 111 PHE PHE A . n A 1 99 THR 99 112 112 THR THR A . n A 1 100 GLY 100 113 113 GLY GLY A . n A 1 101 TYR 101 114 114 TYR TYR A . n A 1 102 THR 102 115 115 THR THR A . n A 1 103 GLN 103 116 116 GLN GLN A . n A 1 104 PRO 104 117 117 PRO PRO A . n A 1 105 GLU 105 118 118 GLU GLU A . n A 1 106 TRP 106 119 119 TRP TRP A . n A 1 107 TRP 107 120 120 TRP TRP A . n A 1 108 TRP 108 121 121 TRP TRP A . n A 1 109 GLY 109 122 122 GLY GLY A . n A 1 110 TYR 110 123 123 TYR TYR A . n A 1 111 PRO 111 124 124 PRO PRO A . n A 1 112 GLY 112 125 125 GLY GLY A . n A 1 113 TYR 113 126 126 TYR TYR A . n A 1 114 TRP 114 127 127 TRP TRP A . n A 1 115 GLY 115 128 128 GLY GLY A . n A 1 116 PRO 116 129 129 PRO PRO A . n A 1 117 SER 117 130 130 SER SER A . n A 1 118 TYR 118 131 131 TYR TYR A . n A 1 119 TRP 119 132 132 TRP TRP A . n A 1 120 GLY 120 133 133 GLY GLY A . n A 1 121 ASN 121 134 134 ASN ASN A . n A 1 122 TRP 122 135 135 TRP TRP A . n A 1 123 GLY 123 136 136 GLY GLY A . n A 1 124 GLY 124 137 137 GLY GLY A . n A 1 125 TRP 125 138 138 TRP TRP A . n A 1 126 TYR 126 139 139 TYR TYR A . n A 1 127 TYR 127 140 140 TYR TYR A . n A 1 128 PRO 128 141 141 PRO PRO A . n A 1 129 TYR 129 142 142 TYR TYR A . n A 1 130 ALA 130 143 143 ALA ALA A . n A 1 131 VAL 131 144 144 VAL VAL A . n A 1 132 THR 132 145 145 THR THR A . n A 1 133 TYR 133 146 146 TYR TYR A . n A 1 134 SER 134 147 147 SER SER A . n A 1 135 TYR 135 148 148 TYR TYR A . n A 1 136 SER 136 149 149 SER SER A . n A 1 137 THR 137 150 150 THR THR A . n A 1 138 ASN 138 151 151 ASN ASN A . n A 1 139 SER 139 152 152 SER SER A . n A 1 140 PHE 140 153 153 PHE PHE A . n A 1 141 ILE 141 154 154 ILE ILE A . n A 1 142 THR 142 155 155 THR THR A . n A 1 143 GLU 143 156 156 GLU GLU A . n A 1 144 MSE 144 157 157 MSE MSE A . n A 1 145 VAL 145 158 158 VAL VAL A . n A 1 146 ASN 146 159 159 ASN ASN A . n A 1 147 LEU 147 160 160 LEU LEU A . n A 1 148 MLY 148 161 161 MLY MLY A . n A 1 149 ALA 149 162 162 ALA ALA A . n A 1 150 ASP 150 163 163 ASP ASP A . n A 1 151 GLU 151 164 164 GLU GLU A . n A 1 152 GLY 152 165 165 GLY GLY A . n A 1 153 GLU 153 166 166 GLU GLU A . n A 1 154 GLY 154 167 167 GLY GLY A . n A 1 155 MLY 155 168 168 MLY MLY A . n A 1 156 MLY 156 169 169 MLY MLY A . n A 1 157 LEU 157 170 170 LEU LEU A . n A 1 158 PRO 158 171 171 PRO PRO A . n A 1 159 VAL 159 172 172 VAL VAL A . n A 1 160 VAL 160 173 173 VAL VAL A . n A 1 161 TRP 161 174 174 TRP TRP A . n A 1 162 THR 162 175 175 THR THR A . n A 1 163 SER 163 176 176 SER SER A . n A 1 164 TYR 164 177 177 TYR TYR A . n A 1 165 LEU 165 178 178 LEU LEU A . n A 1 166 THR 166 179 179 THR THR A . n A 1 167 GLY 167 180 180 GLY GLY A . n A 1 168 PHE 168 181 181 PHE PHE A . n A 1 169 GLU 169 182 182 GLU GLU A . n A 1 170 THR 170 183 183 THR THR A . n A 1 171 GLY 171 184 184 GLY GLY A . n A 1 172 SER 172 185 185 SER SER A . n A 1 173 MLY 173 186 186 MLY MLY A . n A 1 174 ALA 174 187 187 ALA ALA A . n A 1 175 ILE 175 188 188 ILE ILE A . n A 1 176 ASN 176 189 189 ASN ASN A . n A 1 177 ARG 177 190 190 ARG ARG A . n A 1 178 THR 178 191 191 THR THR A . n A 1 179 LEU 179 192 192 LEU LEU A . n A 1 180 ALA 180 193 193 ALA ALA A . n A 1 181 ILE 181 194 194 ILE ILE A . n A 1 182 GLU 182 195 195 GLU GLU A . n A 1 183 ALA 183 196 196 ALA ALA A . n A 1 184 VAL 184 197 197 VAL VAL A . n A 1 185 ASN 185 198 198 ASN ASN A . n A 1 186 GLN 186 199 199 GLN GLN A . n A 1 187 SER 187 200 200 SER SER A . n A 1 188 PHE 188 201 201 PHE PHE A . n A 1 189 THR 189 202 202 THR THR A . n A 1 190 GLN 190 203 203 GLN GLN A . n A 1 191 SER 191 204 204 SER SER A . n A 1 192 PRO 192 205 205 PRO PRO A . n A 1 193 TYR 193 206 206 TYR TYR A . n A 1 194 LEU 194 207 207 LEU LEU A . n A 1 195 THR 195 208 208 THR THR A . n A 1 196 ASN 196 209 209 ASN ASN A . n A 1 197 MLY 197 210 210 MLY MLY A . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 302 300 SO4 SO4 A . C 2 SO4 1 303 301 SO4 SO4 A . D 3 CL 1 304 302 CL CL A . E 3 CL 1 305 303 CL CL A . F 4 HOH 1 401 304 HOH HOH A . F 4 HOH 2 402 305 HOH HOH A . F 4 HOH 3 403 306 HOH HOH A . F 4 HOH 4 404 307 HOH HOH A . F 4 HOH 5 405 308 HOH HOH A . F 4 HOH 6 406 309 HOH HOH A . F 4 HOH 7 407 310 HOH HOH A . F 4 HOH 8 408 311 HOH HOH A . F 4 HOH 9 409 312 HOH HOH A . F 4 HOH 10 410 313 HOH HOH A . F 4 HOH 11 411 314 HOH HOH A . F 4 HOH 12 412 315 HOH HOH A . F 4 HOH 13 413 316 HOH HOH A . F 4 HOH 14 414 317 HOH HOH A . F 4 HOH 15 415 318 HOH HOH A . F 4 HOH 16 416 319 HOH HOH A . F 4 HOH 17 417 320 HOH HOH A . F 4 HOH 18 418 321 HOH HOH A . F 4 HOH 19 419 322 HOH HOH A . F 4 HOH 20 420 323 HOH HOH A . F 4 HOH 21 421 324 HOH HOH A . F 4 HOH 22 422 325 HOH HOH A . F 4 HOH 23 423 326 HOH HOH A . F 4 HOH 24 424 327 HOH HOH A . F 4 HOH 25 425 328 HOH HOH A . F 4 HOH 26 426 329 HOH HOH A . F 4 HOH 27 427 330 HOH HOH A . F 4 HOH 28 428 331 HOH HOH A . F 4 HOH 29 429 332 HOH HOH A . F 4 HOH 30 430 333 HOH HOH A . F 4 HOH 31 431 334 HOH HOH A . F 4 HOH 32 432 335 HOH HOH A . F 4 HOH 33 433 336 HOH HOH A . F 4 HOH 34 434 337 HOH HOH A . F 4 HOH 35 435 338 HOH HOH A . F 4 HOH 36 436 339 HOH HOH A . F 4 HOH 37 437 340 HOH HOH A . F 4 HOH 38 438 341 HOH HOH A . F 4 HOH 39 439 342 HOH HOH A . F 4 HOH 40 440 343 HOH HOH A . F 4 HOH 41 441 344 HOH HOH A . F 4 HOH 42 442 345 HOH HOH A . F 4 HOH 43 443 346 HOH HOH A . F 4 HOH 44 444 347 HOH HOH A . F 4 HOH 45 445 348 HOH HOH A . F 4 HOH 46 446 349 HOH HOH A . F 4 HOH 47 447 350 HOH HOH A . F 4 HOH 48 448 351 HOH HOH A . F 4 HOH 49 449 352 HOH HOH A . F 4 HOH 50 450 353 HOH HOH A . F 4 HOH 51 451 354 HOH HOH A . F 4 HOH 52 452 355 HOH HOH A . F 4 HOH 53 453 356 HOH HOH A . F 4 HOH 54 454 357 HOH HOH A . F 4 HOH 55 455 358 HOH HOH A . F 4 HOH 56 456 359 HOH HOH A . F 4 HOH 57 457 360 HOH HOH A . F 4 HOH 58 458 361 HOH HOH A . F 4 HOH 59 459 362 HOH HOH A . F 4 HOH 60 460 363 HOH HOH A . F 4 HOH 61 461 364 HOH HOH A . F 4 HOH 62 462 365 HOH HOH A . F 4 HOH 63 463 366 HOH HOH A . F 4 HOH 64 464 367 HOH HOH A . F 4 HOH 65 465 368 HOH HOH A . F 4 HOH 66 466 369 HOH HOH A . F 4 HOH 67 467 370 HOH HOH A . F 4 HOH 68 468 371 HOH HOH A . F 4 HOH 69 469 372 HOH HOH A . F 4 HOH 70 470 373 HOH HOH A . F 4 HOH 71 471 374 HOH HOH A . F 4 HOH 72 472 375 HOH HOH A . F 4 HOH 73 473 376 HOH HOH A . F 4 HOH 74 474 377 HOH HOH A . F 4 HOH 75 475 378 HOH HOH A . F 4 HOH 76 476 379 HOH HOH A . F 4 HOH 77 477 380 HOH HOH A . F 4 HOH 78 478 381 HOH HOH A . F 4 HOH 79 479 382 HOH HOH A . F 4 HOH 80 480 383 HOH HOH A . F 4 HOH 81 481 384 HOH HOH A . F 4 HOH 82 482 385 HOH HOH A . F 4 HOH 83 483 386 HOH HOH A . F 4 HOH 84 484 387 HOH HOH A . F 4 HOH 85 485 388 HOH HOH A . F 4 HOH 86 486 389 HOH HOH A . F 4 HOH 87 487 390 HOH HOH A . F 4 HOH 88 488 391 HOH HOH A . F 4 HOH 89 489 392 HOH HOH A . F 4 HOH 90 490 393 HOH HOH A . F 4 HOH 91 491 394 HOH HOH A . F 4 HOH 92 492 395 HOH HOH A . F 4 HOH 93 493 396 HOH HOH A . F 4 HOH 94 494 397 HOH HOH A . F 4 HOH 95 495 398 HOH HOH A . F 4 HOH 96 496 399 HOH HOH A . F 4 HOH 97 497 400 HOH HOH A . F 4 HOH 98 498 401 HOH HOH A . F 4 HOH 99 499 402 HOH HOH A . F 4 HOH 100 500 403 HOH HOH A . F 4 HOH 101 501 404 HOH HOH A . F 4 HOH 102 502 405 HOH HOH A . F 4 HOH 103 503 406 HOH HOH A . F 4 HOH 104 504 407 HOH HOH A . F 4 HOH 105 505 408 HOH HOH A . F 4 HOH 106 506 409 HOH HOH A . F 4 HOH 107 507 410 HOH HOH A . F 4 HOH 108 508 411 HOH HOH A . F 4 HOH 109 509 412 HOH HOH A . F 4 HOH 110 510 413 HOH HOH A . F 4 HOH 111 511 414 HOH HOH A . F 4 HOH 112 512 415 HOH HOH A . F 4 HOH 113 513 416 HOH HOH A . F 4 HOH 114 514 417 HOH HOH A . F 4 HOH 115 515 418 HOH HOH A . F 4 HOH 116 516 419 HOH HOH A . F 4 HOH 117 517 420 HOH HOH A . F 4 HOH 118 518 421 HOH HOH A . F 4 HOH 119 519 422 HOH HOH A . F 4 HOH 120 520 423 HOH HOH A . F 4 HOH 121 521 424 HOH HOH A . F 4 HOH 122 522 425 HOH HOH A . F 4 HOH 123 523 426 HOH HOH A . F 4 HOH 124 524 427 HOH HOH A . F 4 HOH 125 525 428 HOH HOH A . F 4 HOH 126 526 429 HOH HOH A . F 4 HOH 127 527 430 HOH HOH A . F 4 HOH 128 528 431 HOH HOH A . F 4 HOH 129 529 432 HOH HOH A . F 4 HOH 130 530 433 HOH HOH A . F 4 HOH 131 531 434 HOH HOH A . F 4 HOH 132 532 435 HOH HOH A . F 4 HOH 133 533 436 HOH HOH A . F 4 HOH 134 534 437 HOH HOH A . F 4 HOH 135 535 438 HOH HOH A . F 4 HOH 136 536 439 HOH HOH A . F 4 HOH 137 537 440 HOH HOH A . F 4 HOH 138 538 441 HOH HOH A . F 4 HOH 139 539 442 HOH HOH A . F 4 HOH 140 540 443 HOH HOH A . F 4 HOH 141 541 444 HOH HOH A . F 4 HOH 142 542 445 HOH HOH A . F 4 HOH 143 543 446 HOH HOH A . F 4 HOH 144 544 447 HOH HOH A . F 4 HOH 145 545 448 HOH HOH A . F 4 HOH 146 546 449 HOH HOH A . F 4 HOH 147 547 450 HOH HOH A . F 4 HOH 148 548 451 HOH HOH A . F 4 HOH 149 549 452 HOH HOH A . F 4 HOH 150 550 453 HOH HOH A . F 4 HOH 151 551 454 HOH HOH A . F 4 HOH 152 552 455 HOH HOH A . F 4 HOH 153 553 456 HOH HOH A . F 4 HOH 154 554 457 HOH HOH A . F 4 HOH 155 555 458 HOH HOH A . F 4 HOH 156 556 459 HOH HOH A . F 4 HOH 157 557 460 HOH HOH A . F 4 HOH 158 558 461 HOH HOH A . F 4 HOH 159 559 462 HOH HOH A . F 4 HOH 160 560 463 HOH HOH A . F 4 HOH 161 561 464 HOH HOH A . F 4 HOH 162 562 465 HOH HOH A . F 4 HOH 163 563 466 HOH HOH A . F 4 HOH 164 564 467 HOH HOH A . F 4 HOH 165 565 468 HOH HOH A . F 4 HOH 166 566 469 HOH HOH A . F 4 HOH 167 567 470 HOH HOH A . F 4 HOH 168 568 471 HOH HOH A . F 4 HOH 169 569 472 HOH HOH A . F 4 HOH 170 570 473 HOH HOH A . F 4 HOH 171 571 474 HOH HOH A . F 4 HOH 172 572 475 HOH HOH A . F 4 HOH 173 573 476 HOH HOH A . F 4 HOH 174 574 477 HOH HOH A . F 4 HOH 175 575 478 HOH HOH A . F 4 HOH 176 576 479 HOH HOH A . F 4 HOH 177 577 480 HOH HOH A . F 4 HOH 178 578 481 HOH HOH A . F 4 HOH 179 579 482 HOH HOH A . F 4 HOH 180 580 483 HOH HOH A . F 4 HOH 181 581 484 HOH HOH A . F 4 HOH 182 582 485 HOH HOH A . F 4 HOH 183 583 486 HOH HOH A . F 4 HOH 184 584 487 HOH HOH A . F 4 HOH 185 585 488 HOH HOH A . F 4 HOH 186 586 489 HOH HOH A . F 4 HOH 187 587 490 HOH HOH A . F 4 HOH 188 588 491 HOH HOH A . F 4 HOH 189 589 492 HOH HOH A . F 4 HOH 190 590 493 HOH HOH A . F 4 HOH 191 591 494 HOH HOH A . F 4 HOH 192 592 495 HOH HOH A . F 4 HOH 193 593 496 HOH HOH A . F 4 HOH 194 594 497 HOH HOH A . F 4 HOH 195 595 498 HOH HOH A . F 4 HOH 196 596 499 HOH HOH A . F 4 HOH 197 597 500 HOH HOH A . F 4 HOH 198 598 501 HOH HOH A . F 4 HOH 199 599 502 HOH HOH A . F 4 HOH 200 600 503 HOH HOH A . F 4 HOH 201 601 504 HOH HOH A . F 4 HOH 202 602 505 HOH HOH A . F 4 HOH 203 603 506 HOH HOH A . F 4 HOH 204 604 507 HOH HOH A . F 4 HOH 205 605 508 HOH HOH A . F 4 HOH 206 606 509 HOH HOH A . F 4 HOH 207 607 510 HOH HOH A . F 4 HOH 208 608 511 HOH HOH A . F 4 HOH 209 609 512 HOH HOH A . F 4 HOH 210 610 513 HOH HOH A . F 4 HOH 211 611 514 HOH HOH A . F 4 HOH 212 612 515 HOH HOH A . F 4 HOH 213 613 516 HOH HOH A . F 4 HOH 214 614 517 HOH HOH A . F 4 HOH 215 615 518 HOH HOH A . F 4 HOH 216 616 519 HOH HOH A . F 4 HOH 217 617 520 HOH HOH A . F 4 HOH 218 618 521 HOH HOH A . F 4 HOH 219 619 522 HOH HOH A . F 4 HOH 220 620 523 HOH HOH A . F 4 HOH 221 621 524 HOH HOH A . F 4 HOH 222 622 525 HOH HOH A . F 4 HOH 223 623 526 HOH HOH A . F 4 HOH 224 624 527 HOH HOH A . F 4 HOH 225 625 528 HOH HOH A . F 4 HOH 226 626 529 HOH HOH A . F 4 HOH 227 627 530 HOH HOH A . F 4 HOH 228 628 531 HOH HOH A . F 4 HOH 229 629 532 HOH HOH A . F 4 HOH 230 630 533 HOH HOH A . F 4 HOH 231 631 534 HOH HOH A . F 4 HOH 232 632 535 HOH HOH A . F 4 HOH 233 633 536 HOH HOH A . F 4 HOH 234 634 537 HOH HOH A . F 4 HOH 235 635 538 HOH HOH A . F 4 HOH 236 636 539 HOH HOH A . F 4 HOH 237 637 540 HOH HOH A . F 4 HOH 238 638 541 HOH HOH A . F 4 HOH 239 639 542 HOH HOH A . F 4 HOH 240 640 543 HOH HOH A . F 4 HOH 241 641 544 HOH HOH A . F 4 HOH 242 642 545 HOH HOH A . F 4 HOH 243 643 546 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MLY 25 A MLY 38 ? LYS N-DIMETHYL-LYSINE 2 A MLY 30 A MLY 43 ? LYS N-DIMETHYL-LYSINE 3 A MLY 40 A MLY 53 ? LYS N-DIMETHYL-LYSINE 4 A MLY 48 A MLY 61 ? LYS N-DIMETHYL-LYSINE 5 A MSE 69 A MSE 82 ? MET SELENOMETHIONINE 6 A MLY 72 A MLY 85 ? LYS N-DIMETHYL-LYSINE 7 A MLY 80 A MLY 93 ? LYS N-DIMETHYL-LYSINE 8 A MSE 144 A MSE 157 ? MET SELENOMETHIONINE 9 A MLY 148 A MLY 161 ? LYS N-DIMETHYL-LYSINE 10 A MLY 155 A MLY 168 ? LYS N-DIMETHYL-LYSINE 11 A MLY 156 A MLY 169 ? LYS N-DIMETHYL-LYSINE 12 A MLY 173 A MLY 186 ? LYS N-DIMETHYL-LYSINE 13 A MLY 197 A MLY 210 ? LYS N-DIMETHYL-LYSINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 500 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id F _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-07-11 2 'Structure model' 1 1 2014-12-24 3 'Structure model' 1 2 2017-11-15 4 'Structure model' 1 3 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' database_2 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 4 'Structure model' '_struct_ref_seq_dif.details' 7 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 8 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 9 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 20.8810 _pdbx_refine_tls.origin_y 18.2810 _pdbx_refine_tls.origin_z 22.1610 _pdbx_refine_tls.T[1][1] 0.0031 _pdbx_refine_tls.T[2][2] 0.0203 _pdbx_refine_tls.T[3][3] 0.0510 _pdbx_refine_tls.T[1][2] 0.0032 _pdbx_refine_tls.T[1][3] 0.0035 _pdbx_refine_tls.T[2][3] 0.0026 _pdbx_refine_tls.L[1][1] 0.4449 _pdbx_refine_tls.L[2][2] 0.6399 _pdbx_refine_tls.L[3][3] 1.1891 _pdbx_refine_tls.L[1][2] 0.0693 _pdbx_refine_tls.L[1][3] -0.2178 _pdbx_refine_tls.L[2][3] 0.0388 _pdbx_refine_tls.S[1][1] -0.0233 _pdbx_refine_tls.S[2][2] 0.0008 _pdbx_refine_tls.S[3][3] 0.0225 _pdbx_refine_tls.S[1][2] -0.0233 _pdbx_refine_tls.S[1][3] 0.0074 _pdbx_refine_tls.S[2][3] 0.0097 _pdbx_refine_tls.S[2][1] -0.0041 _pdbx_refine_tls.S[3][1] 0.0520 _pdbx_refine_tls.S[3][2] 0.0071 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 27 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 210 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _phasing.method SAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SOLVE . ? program 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 4 SCALA 3.3.20 ? package 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' ? ? ? 5 REFMAC 5.6.0117 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 6 MOSFLM . ? ? ? ? 'data reduction' ? ? ? # _pdbx_entry_details.entry_id 4F54 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;1. THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 15-210 OF THE TARGET SEQUENCE. 2. THE PROTEIN WAS REDUCTIVELY METHYLATED PRIOR TO CRYSTALLIZATION. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 29 ? ? -90.97 30.61 2 1 ASP A 52 ? ? -90.93 39.36 3 1 SER A 58 ? ? -117.11 -168.72 4 1 THR A 115 ? ? 72.77 -52.60 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 27 ? CG ? A ASP 14 CG 2 1 Y 1 A ASP 27 ? OD1 ? A ASP 14 OD1 3 1 Y 1 A ASP 27 ? OD2 ? A ASP 14 OD2 4 1 Y 1 A MLY 43 ? CD ? A MLY 30 CD 5 1 Y 1 A MLY 43 ? CE ? A MLY 30 CE 6 1 Y 1 A MLY 43 ? NZ ? A MLY 30 NZ 7 1 Y 1 A MLY 43 ? CH1 ? A MLY 30 CH1 8 1 Y 1 A MLY 43 ? CH2 ? A MLY 30 CH2 9 1 Y 1 A MLY 61 ? CD ? A MLY 48 CD 10 1 Y 1 A MLY 61 ? CE ? A MLY 48 CE 11 1 Y 1 A MLY 61 ? NZ ? A MLY 48 NZ 12 1 Y 1 A MLY 61 ? CH1 ? A MLY 48 CH1 13 1 Y 1 A MLY 61 ? CH2 ? A MLY 48 CH2 14 1 Y 1 A GLU 64 ? CG ? A GLU 51 CG 15 1 Y 1 A GLU 64 ? CD ? A GLU 51 CD 16 1 Y 1 A GLU 64 ? OE1 ? A GLU 51 OE1 17 1 Y 1 A GLU 64 ? OE2 ? A GLU 51 OE2 18 1 Y 1 A MLY 186 ? CG ? A MLY 173 CG 19 1 Y 1 A MLY 186 ? CD ? A MLY 173 CD 20 1 Y 1 A MLY 186 ? CE ? A MLY 173 CE 21 1 Y 1 A MLY 186 ? NZ ? A MLY 173 NZ 22 1 Y 1 A MLY 186 ? CH1 ? A MLY 173 CH1 23 1 Y 1 A MLY 186 ? CH2 ? A MLY 173 CH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A ALA 15 ? A ALA 2 3 1 Y 1 A SER 16 ? A SER 3 4 1 Y 1 A CYS 17 ? A CYS 4 5 1 Y 1 A GLU 18 ? A GLU 5 6 1 Y 1 A MLY 19 ? A MLY 6 7 1 Y 1 A ASP 20 ? A ASP 7 8 1 Y 1 A PRO 21 ? A PRO 8 9 1 Y 1 A ASP 22 ? A ASP 9 10 1 Y 1 A MSE 23 ? A MSE 10 11 1 Y 1 A GLY 24 ? A GLY 11 12 1 Y 1 A MLY 25 ? A MLY 12 13 1 Y 1 A LEU 26 ? A LEU 13 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 'CHLORIDE ION' CL 4 water HOH #