HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 11-MAY-12 4F54 TITLE CRYSTAL STRUCTURE OF A DUF4136 FAMILY PROTEIN (BT2437) FROM TITLE 2 BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.60 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 15-209; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 STRAIN: ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482; SOURCE 5 GENE: BT_2437; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PF13590 FAMILY PROTEIN, DUF4136, STRUCTURAL GENOMICS, JOINT CENTER KEYWDS 2 FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI- KEYWDS 3 BIOLOGY, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 4F54 1 REMARK SEQADV LINK REVDAT 3 15-NOV-17 4F54 1 REMARK REVDAT 2 24-DEC-14 4F54 1 TITLE REVDAT 1 11-JUL-12 4F54 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN (BT2437) FROM JRNL TITL 2 BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.60 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 30002 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1514 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2041 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 95 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1496 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 243 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.81000 REMARK 3 B22 (A**2) : -0.54000 REMARK 3 B33 (A**2) : -1.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.080 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.289 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1604 ; 0.015 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1005 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2213 ; 1.672 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2456 ; 0.970 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 198 ; 6.045 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 76 ;32.709 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 188 ;10.970 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 1 ;16.386 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 234 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1814 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 355 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 210 REMARK 3 ORIGIN FOR THE GROUP (A): 20.8810 18.2810 22.1610 REMARK 3 T TENSOR REMARK 3 T11: 0.0031 T22: 0.0203 REMARK 3 T33: 0.0510 T12: 0.0032 REMARK 3 T13: 0.0035 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.4449 L22: 0.6399 REMARK 3 L33: 1.1891 L12: 0.0693 REMARK 3 L13: -0.2178 L23: 0.0388 REMARK 3 S TENSOR REMARK 3 S11: -0.0233 S12: -0.0233 S13: 0.0074 REMARK 3 S21: -0.0041 S22: 0.0008 S23: 0.0097 REMARK 3 S31: 0.0520 S32: 0.0071 S33: 0.0225 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL B FACTORS. 3. ANISOU RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS REMARK 3 ASSIGNMENT. 5. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 6. SULFATE AND CHLORIDE IONS FROM THE REMARK 3 CRYSTALLIZATION/PURIFICATION SOLUTION ARE MODELED. 7. LYSINE REMARK 3 RESIDUES WERE REDUCTIVELY METHYLATED PRIOR TO CRYSTALLIZATION. REMARK 3 THEY ARE MODELED AS N-DIMETHYL-LYSINE (MLY). REMARK 4 REMARK 4 4F54 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000072466. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR; DOUBLE REMARK 200 CRYSTAL SI(111) MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30584 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 33.684 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.76100 REMARK 200 R SYM FOR SHELL (I) : 0.76100 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.00M AMMONIUM SULFATE, 0.1M TRIS REMARK 280 HYDROCHLORIDE PH 8.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.79400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 26.79400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.20100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.95350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.20100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.95350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 26.79400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.20100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.95350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 26.79400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.20100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.95350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A REMARK 300 MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 500 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ALA A 15 REMARK 465 SER A 16 REMARK 465 CYS A 17 REMARK 465 GLU A 18 REMARK 465 MLY A 19 REMARK 465 ASP A 20 REMARK 465 PRO A 21 REMARK 465 ASP A 22 REMARK 465 MSE A 23 REMARK 465 GLY A 24 REMARK 465 MLY A 25 REMARK 465 LEU A 26 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 27 CG OD1 OD2 REMARK 470 MLY A 43 CD CE NZ CH1 CH2 REMARK 470 MLY A 61 CD CE NZ CH1 CH2 REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 MLY A 186 CG CD CE NZ CH1 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 29 30.61 -90.97 REMARK 500 ASP A 52 39.36 -90.93 REMARK 500 SER A 58 -168.72 -117.11 REMARK 500 THR A 115 -52.60 72.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-392956 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 1. THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 15-210 OF THE TARGET REMARK 999 SEQUENCE. 2. THE PROTEIN WAS REDUCTIVELY METHYLATED PRIOR TO REMARK 999 CRYSTALLIZATION. DBREF 4F54 A 15 210 UNP Q8A510 Q8A510_BACTN 15 210 SEQADV 4F54 GLY A 0 UNP Q8A510 EXPRESSION TAG SEQRES 1 A 197 GLY ALA SER CYS GLU MLY ASP PRO ASP MSE GLY MLY LEU SEQRES 2 A 197 ASP ASP ASN TYR LEU VAL TYR THR ASN TYR ASP MLY GLN SEQRES 3 A 197 ALA ASN PHE MLY ASP PHE SER THR PHE TYR LEU ALA ASP SEQRES 4 A 197 MLY ILE LEU VAL ILE SER ASP SER MLY GLU PRO GLU TYR SEQRES 5 A 197 LEU GLU GLY GLU GLY ALA GLU GLN ILE LEU ALA ALA TYR SEQRES 6 A 197 THR GLU ASN MSE GLU ALA MLY GLY TYR GLN PRO ALA ALA SEQRES 7 A 197 ASP MLY GLU SER ALA ASP LEU GLY ILE GLN VAL SER TYR SEQRES 8 A 197 ILE ALA SER THR TYR TYR PHE THR GLY TYR THR GLN PRO SEQRES 9 A 197 GLU TRP TRP TRP GLY TYR PRO GLY TYR TRP GLY PRO SER SEQRES 10 A 197 TYR TRP GLY ASN TRP GLY GLY TRP TYR TYR PRO TYR ALA SEQRES 11 A 197 VAL THR TYR SER TYR SER THR ASN SER PHE ILE THR GLU SEQRES 12 A 197 MSE VAL ASN LEU MLY ALA ASP GLU GLY GLU GLY MLY MLY SEQRES 13 A 197 LEU PRO VAL VAL TRP THR SER TYR LEU THR GLY PHE GLU SEQRES 14 A 197 THR GLY SER MLY ALA ILE ASN ARG THR LEU ALA ILE GLU SEQRES 15 A 197 ALA VAL ASN GLN SER PHE THR GLN SER PRO TYR LEU THR SEQRES 16 A 197 ASN MLY MODRES 4F54 MLY A 38 LYS N-DIMETHYL-LYSINE MODRES 4F54 MLY A 43 LYS N-DIMETHYL-LYSINE MODRES 4F54 MLY A 53 LYS N-DIMETHYL-LYSINE MODRES 4F54 MLY A 61 LYS N-DIMETHYL-LYSINE MODRES 4F54 MSE A 82 MET SELENOMETHIONINE MODRES 4F54 MLY A 85 LYS N-DIMETHYL-LYSINE MODRES 4F54 MLY A 93 LYS N-DIMETHYL-LYSINE MODRES 4F54 MSE A 157 MET SELENOMETHIONINE MODRES 4F54 MLY A 161 LYS N-DIMETHYL-LYSINE MODRES 4F54 MLY A 168 LYS N-DIMETHYL-LYSINE MODRES 4F54 MLY A 169 LYS N-DIMETHYL-LYSINE MODRES 4F54 MLY A 186 LYS N-DIMETHYL-LYSINE MODRES 4F54 MLY A 210 LYS N-DIMETHYL-LYSINE HET MLY A 38 11 HET MLY A 43 6 HET MLY A 53 11 HET MLY A 61 6 HET MSE A 82 8 HET MLY A 85 11 HET MLY A 93 11 HET MSE A 157 8 HET MLY A 161 11 HET MLY A 168 11 HET MLY A 169 19 HET MLY A 186 5 HET MLY A 210 12 HET SO4 A 302 5 HET SO4 A 303 5 HET CL A 304 1 HET CL A 305 1 HETNAM MLY N-DIMETHYL-LYSINE HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 1 MLY 11(C8 H18 N2 O2) FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 CL 2(CL 1-) FORMUL 6 HOH *243(H2 O) HELIX 1 1 ASN A 41 PHE A 45 5 5 HELIX 2 2 GLY A 68 MLY A 85 1 18 HELIX 3 3 GLU A 118 TYR A 123 5 6 HELIX 4 4 GLY A 128 GLY A 133 1 6 HELIX 5 5 GLY A 184 ARG A 190 1 7 HELIX 6 6 THR A 191 GLN A 203 1 13 SHEET 1 A 6 LEU A 31 TYR A 36 0 SHEET 2 A 6 MLY A 169 THR A 179 -1 O THR A 179 N LEU A 31 SHEET 3 A 6 SER A 152 ASN A 159 -1 N MSE A 157 O VAL A 173 SHEET 4 A 6 LEU A 98 ILE A 105 -1 N ILE A 105 O SER A 152 SHEET 5 A 6 THR A 47 LEU A 50 1 N TYR A 49 O LEU A 98 SHEET 6 A 6 GLN A 88 PRO A 89 1 O GLN A 88 N PHE A 48 SHEET 1 B 6 GLU A 64 TYR A 65 0 SHEET 2 B 6 LEU A 55 ILE A 57 -1 N VAL A 56 O GLU A 64 SHEET 3 B 6 LEU A 98 ILE A 105 1 O TYR A 104 N LEU A 55 SHEET 4 B 6 SER A 152 ASN A 159 -1 O SER A 152 N ILE A 105 SHEET 5 B 6 MLY A 169 THR A 179 -1 O VAL A 173 N MSE A 157 SHEET 6 B 6 GLY A 137 TYR A 139 1 N GLY A 137 O LEU A 170 LINK C ASP A 37 N MLY A 38 1555 1555 1.34 LINK C MLY A 38 N GLN A 39 1555 1555 1.34 LINK C PHE A 42 N MLY A 43 1555 1555 1.34 LINK C MLY A 43 N ASP A 44 1555 1555 1.34 LINK C ASP A 52 N MLY A 53 1555 1555 1.34 LINK C MLY A 53 N ILE A 54 1555 1555 1.32 LINK C SER A 60 N MLY A 61 1555 1555 1.34 LINK C MLY A 61 N GLU A 62 1555 1555 1.34 LINK C ASN A 81 N MSE A 82 1555 1555 1.34 LINK C MSE A 82 N GLU A 83 1555 1555 1.31 LINK C ALA A 84 N MLY A 85 1555 1555 1.33 LINK C MLY A 85 N GLY A 86 1555 1555 1.34 LINK C ASP A 92 N MLY A 93 1555 1555 1.33 LINK C MLY A 93 N GLU A 94 1555 1555 1.33 LINK C GLU A 156 N MSE A 157 1555 1555 1.33 LINK C MSE A 157 N VAL A 158 1555 1555 1.32 LINK C LEU A 160 N MLY A 161 1555 1555 1.34 LINK C MLY A 161 N ALA A 162 1555 1555 1.33 LINK C GLY A 167 N MLY A 168 1555 1555 1.34 LINK C MLY A 168 N MLY A 169 1555 1555 1.34 LINK C MLY A 169 N LEU A 170 1555 1555 1.32 LINK C SER A 185 N MLY A 186 1555 1555 1.34 LINK C MLY A 186 N ALA A 187 1555 1555 1.34 LINK C ASN A 209 N MLY A 210 1555 1555 1.33 SITE 1 AC1 8 TYR A 49 ASP A 52 MLY A 53 MLY A 93 SITE 2 AC1 8 TYR A 131 HOH A 553 HOH A 591 HOH A 627 SITE 1 AC2 3 ASP A 92 MLY A 93 GLU A 94 SITE 1 AC3 2 ASP A 59 ALA A 143 SITE 1 AC4 1 GLU A 164 CRYST1 78.402 111.907 53.588 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012755 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008936 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018661 0.00000