HEADER HYDROLASE 15-MAY-12 4F6P TITLE CRYSTAL STRUCTURE OF THE YEAST METACASPASE YCA1 C276A MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: METACASPASE-1; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.22.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: S288C; SOURCE 6 GENE: MCA1, YCA1, YOR197W; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ROSSMANN FOLD, METACASPASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.H.WONG,C.Y.YAN,Y.G.SHI REVDAT 2 08-NOV-23 4F6P 1 REMARK SEQADV REVDAT 1 27-MAR-13 4F6P 0 JRNL AUTH A.H.WONG,C.Y.YAN,Y.G.SHI JRNL TITL CRYSTAL STRUCTURE OF THE METACASPASE YCA1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 37674 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1870 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.0152 - 3.8051 0.94 2604 153 0.1634 0.1602 REMARK 3 2 3.8051 - 3.0209 0.96 2684 144 0.1631 0.1640 REMARK 3 3 3.0209 - 2.6393 0.97 2697 149 0.1845 0.1863 REMARK 3 4 2.6393 - 2.3980 0.99 2786 141 0.1743 0.1867 REMARK 3 5 2.3980 - 2.2262 0.99 2780 138 0.1787 0.1925 REMARK 3 6 2.2262 - 2.0950 0.99 2788 123 0.1773 0.2100 REMARK 3 7 2.0950 - 1.9901 1.00 2794 155 0.1772 0.1985 REMARK 3 8 1.9901 - 1.9035 1.00 2826 144 0.1943 0.2153 REMARK 3 9 1.9035 - 1.8302 1.00 2782 146 0.2015 0.1905 REMARK 3 10 1.8302 - 1.7670 1.00 2809 136 0.1921 0.1928 REMARK 3 11 1.7670 - 1.7118 1.00 2788 155 0.2123 0.2181 REMARK 3 12 1.7118 - 1.6629 1.00 2778 155 0.2362 0.2806 REMARK 3 13 1.6629 - 1.6191 0.96 2688 131 0.2726 0.3403 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 43.48 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.79100 REMARK 3 B22 (A**2) : -2.79100 REMARK 3 B33 (A**2) : 5.58200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2133 REMARK 3 ANGLE : 1.061 2895 REMARK 3 CHIRALITY : 0.074 320 REMARK 3 PLANARITY : 0.005 380 REMARK 3 DIHEDRAL : 15.278 793 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 21.7024 -11.6846 -24.5222 REMARK 3 T TENSOR REMARK 3 T11: 0.1057 T22: 0.1055 REMARK 3 T33: 0.0930 T12: -0.0077 REMARK 3 T13: -0.0087 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 1.0464 L22: 2.0726 REMARK 3 L33: 0.8301 L12: -0.5278 REMARK 3 L13: -0.3921 L23: 0.4441 REMARK 3 S TENSOR REMARK 3 S11: 0.0198 S12: 0.0039 S13: 0.1143 REMARK 3 S21: -0.0173 S22: 0.0079 S23: -0.0032 REMARK 3 S31: -0.0723 S32: -0.0358 S33: -0.0165 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4F6P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000072523. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX325HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37675 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.619 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4F6O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8M POTASSIUM PHOSPHATE MONOBASIC, REMARK 280 0.8M SODIUM PHOSPHATE MONOBASIC, PH 5.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 57.20000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.02444 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 20.55967 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 57.20000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 33.02444 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 20.55967 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 57.20000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 33.02444 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 20.55967 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 66.04887 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 41.11933 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 66.04887 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 41.11933 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 66.04887 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 41.11933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 634 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 761 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 83 REMARK 465 GLN A 84 REMARK 465 ALA A 85 REMARK 465 LYS A 86 REMARK 465 ALA A 87 REMARK 465 GLN A 88 REMARK 465 LEU A 89 REMARK 465 SER A 90 REMARK 465 ASN A 91 REMARK 465 GLY A 92 REMARK 465 ASN A 94 REMARK 465 ASN A 95 REMARK 465 PRO A 96 REMARK 465 ASN A 97 REMARK 465 GLU A 225 REMARK 465 ASP A 226 REMARK 465 LEU A 227 REMARK 465 ASP A 228 REMARK 465 GLY A 229 REMARK 465 ASP A 230 REMARK 465 GLU A 231 REMARK 465 GLU A 232 REMARK 465 ASP A 233 REMARK 465 GLY A 234 REMARK 465 MET A 235 REMARK 465 TRP A 300 REMARK 465 LYS A 301 REMARK 465 ASP A 302 REMARK 465 VAL A 303 REMARK 465 GLY A 304 REMARK 465 GLN A 305 REMARK 465 ASP A 306 REMARK 465 GLY A 307 REMARK 465 LEU A 308 REMARK 465 GLN A 309 REMARK 465 ALA A 310 REMARK 465 ALA A 311 REMARK 465 ILE A 312 REMARK 465 SER A 313 REMARK 465 TYR A 314 REMARK 465 ALA A 315 REMARK 465 THR A 316 REMARK 465 GLY A 317 REMARK 465 ASN A 318 REMARK 465 ARG A 319 REMARK 465 ALA A 320 REMARK 465 ALA A 321 REMARK 465 LEU A 322 REMARK 465 ILE A 323 REMARK 465 GLY A 324 REMARK 465 SER A 325 REMARK 465 LEU A 326 REMARK 465 GLY A 327 REMARK 465 SER A 328 REMARK 465 ILE A 329 REMARK 465 PHE A 330 REMARK 465 LYS A 331 REMARK 465 THR A 332 REMARK 465 VAL A 333 REMARK 465 LYS A 334 REMARK 465 GLY A 335 REMARK 465 GLY A 336 REMARK 465 MET A 337 REMARK 465 GLY A 338 REMARK 465 ASN A 339 REMARK 465 ASN A 340 REMARK 465 VAL A 341 REMARK 465 ASP A 342 REMARK 465 ARG A 343 REMARK 465 GLU A 344 REMARK 465 ARG A 345 REMARK 465 VAL A 346 REMARK 465 ARG A 347 REMARK 465 GLN A 348 REMARK 465 ILE A 349 REMARK 465 LYS A 350 REMARK 465 ASP A 364 REMARK 465 ASN A 365 REMARK 465 GLN A 366 REMARK 465 THR A 367 REMARK 465 SER A 368 REMARK 465 ALA A 369 REMARK 465 ASP A 370 REMARK 465 ALA A 371 REMARK 465 VAL A 372 REMARK 465 GLU A 373 REMARK 465 ASP A 374 REMARK 465 GLY A 375 REMARK 465 GLN A 376 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 377 O HOH A 731 1.88 REMARK 500 O HOH A 707 O HOH A 786 1.91 REMARK 500 O HOH A 680 O HOH A 817 1.93 REMARK 500 O HOH A 719 O HOH A 779 1.97 REMARK 500 O HOH A 797 O HOH A 820 2.01 REMARK 500 O LYS A 363 O HOH A 815 2.07 REMARK 500 O HOH A 793 O HOH A 818 2.08 REMARK 500 O HOH A 729 O HOH A 800 2.11 REMARK 500 ND2 ASN A 377 O HOH A 684 2.14 REMARK 500 NH1 ARG A 189 O HOH A 780 2.14 REMARK 500 O HOH A 793 O HOH A 798 2.15 REMARK 500 O HOH A 798 O HOH A 818 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 801 O HOH A 820 5445 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 124 43.80 -106.95 REMARK 500 ASP A 243 31.94 -97.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DFH A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4F6O RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE YEAST METACASPASE YCA1 DBREF 4F6P A 83 432 UNP Q08601 MCA1_YEAST 83 432 SEQADV 4F6P ALA A 276 UNP Q08601 CYS 276 ENGINEERED MUTATION SEQRES 1 A 350 GLU GLN ALA LYS ALA GLN LEU SER ASN GLY TYR ASN ASN SEQRES 2 A 350 PRO ASN VAL ASN ALA SER ASN MET TYR GLY PRO PRO GLN SEQRES 3 A 350 ASN MET SER LEU PRO PRO PRO GLN THR GLN THR ILE GLN SEQRES 4 A 350 GLY THR ASP GLN PRO TYR GLN TYR SER GLN CYS THR GLY SEQRES 5 A 350 ARG ARG LYS ALA LEU ILE ILE GLY ILE ASN TYR ILE GLY SEQRES 6 A 350 SER LYS ASN GLN LEU ARG GLY CYS ILE ASN ASP ALA HIS SEQRES 7 A 350 ASN ILE PHE ASN PHE LEU THR ASN GLY TYR GLY TYR SER SEQRES 8 A 350 SER ASP ASP ILE VAL ILE LEU THR ASP ASP GLN ASN ASP SEQRES 9 A 350 LEU VAL ARG VAL PRO THR ARG ALA ASN MET ILE ARG ALA SEQRES 10 A 350 MET GLN TRP LEU VAL LYS ASP ALA GLN PRO ASN ASP SER SEQRES 11 A 350 LEU PHE LEU HIS TYR SER GLY HIS GLY GLY GLN THR GLU SEQRES 12 A 350 ASP LEU ASP GLY ASP GLU GLU ASP GLY MET ASP ASP VAL SEQRES 13 A 350 ILE TYR PRO VAL ASP PHE GLU THR GLN GLY PRO ILE ILE SEQRES 14 A 350 ASP ASP GLU MET HIS ASP ILE MET VAL LYS PRO LEU GLN SEQRES 15 A 350 GLN GLY VAL ARG LEU THR ALA LEU PHE ASP SER ALA HIS SEQRES 16 A 350 SER GLY THR VAL LEU ASP LEU PRO TYR THR TYR SER THR SEQRES 17 A 350 LYS GLY ILE ILE LYS GLU PRO ASN ILE TRP LYS ASP VAL SEQRES 18 A 350 GLY GLN ASP GLY LEU GLN ALA ALA ILE SER TYR ALA THR SEQRES 19 A 350 GLY ASN ARG ALA ALA LEU ILE GLY SER LEU GLY SER ILE SEQRES 20 A 350 PHE LYS THR VAL LYS GLY GLY MET GLY ASN ASN VAL ASP SEQRES 21 A 350 ARG GLU ARG VAL ARG GLN ILE LYS PHE SER ALA ALA ASP SEQRES 22 A 350 VAL VAL MET LEU SER GLY SER LYS ASP ASN GLN THR SER SEQRES 23 A 350 ALA ASP ALA VAL GLU ASP GLY GLN ASN THR GLY ALA MET SEQRES 24 A 350 SER HIS ALA PHE ILE LYS VAL MET THR LEU GLN PRO GLN SEQRES 25 A 350 GLN SER TYR LEU SER LEU LEU GLN ASN MET ARG LYS GLU SEQRES 26 A 350 LEU ALA GLY LYS TYR SER GLN LYS PRO GLN LEU SER SER SEQRES 27 A 350 SER HIS PRO ILE ASP VAL ASN LEU GLN PHE ILE MET HET DFH A 501 15 HETNAM DFH 1,1-DIPHENYLETHANOL FORMUL 2 DFH C14 H14 O FORMUL 3 HOH *225(H2 O) HELIX 1 1 GLY A 154 ASN A 168 1 15 HELIX 2 2 SER A 173 ASP A 175 5 3 HELIX 3 3 ASP A 186 VAL A 190 5 5 HELIX 4 4 THR A 192 LYS A 205 1 14 HELIX 5 5 ASP A 243 GLY A 248 1 6 HELIX 6 6 ASP A 252 VAL A 260 1 9 HELIX 7 7 GLY A 379 GLN A 392 1 14 HELIX 8 8 SER A 396 ALA A 409 1 14 SHEET 1 A 2 GLN A 118 THR A 119 0 SHEET 2 A 2 PRO A 126 TYR A 127 -1 O TYR A 127 N GLN A 118 SHEET 1 B 8 ILE A 177 THR A 181 0 SHEET 2 B 8 ARG A 136 GLY A 142 1 N ILE A 140 O LEU A 180 SHEET 3 B 8 SER A 212 SER A 218 1 O HIS A 216 N LEU A 139 SHEET 4 B 8 ARG A 268 PHE A 273 1 O THR A 270 N LEU A 213 SHEET 5 B 8 ASP A 355 SER A 362 1 O LEU A 359 N PHE A 273 SHEET 6 B 8 LYS A 415 SER A 420 -1 O LYS A 415 N SER A 362 SHEET 7 B 8 TYR A 286 SER A 289 -1 N TYR A 288 O LEU A 418 SHEET 8 B 8 GLY A 292 LYS A 295 -1 O GLY A 292 N SER A 289 SHEET 1 C 3 GLY A 221 GLY A 222 0 SHEET 2 C 3 VAL A 238 ILE A 239 -1 O VAL A 238 N GLY A 222 SHEET 3 C 3 ILE A 250 ILE A 251 -1 O ILE A 250 N ILE A 239 SITE 1 AC1 7 ASP A 182 GLN A 184 ASN A 185 LEU A 187 SITE 2 AC1 7 VAL A 190 HIS A 383 HOH A 603 CRYST1 114.400 114.400 61.679 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008741 0.005047 0.000000 0.00000 SCALE2 0.000000 0.010094 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016213 0.00000