HEADER SUGAR BINDING PROTEIN 15-MAY-12 4F7A TITLE CRYSTAL STRUCTURE OF A SUSD HOMOLOG (BVU_2203) FROM BACTEROIDES TITLE 2 VULGATUS ATCC 8482 AT 1.85 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES VULGATUS; SOURCE 3 ORGANISM_TAXID: 435590; SOURCE 4 STRAIN: ATCC 8482; SOURCE 5 GENE: BVU_2203; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS TPR-LIKE PROTEIN, MUCIN O-GLYCAN BINDING, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-BIOLOGY, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 4F7A 1 REMARK SEQADV LINK REVDAT 3 24-JAN-18 4F7A 1 JRNL REVDAT 2 15-NOV-17 4F7A 1 REMARK REVDAT 1 30-MAY-12 4F7A 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A SUSD HOMOLOG (BVU_2203) FROM JRNL TITL 2 BACTEROIDES VULGATUS ATCC 8482 AT 1.85 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 60336 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.162 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3043 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4199 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 197 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3939 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 514 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.091 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.086 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.052 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.306 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4180 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2754 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5704 ; 1.276 ; 1.933 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6737 ; 0.898 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 532 ; 5.736 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 210 ;37.315 ;25.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 666 ;11.211 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;17.711 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 599 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4784 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 863 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2537 ; 1.419 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1035 ; 0.435 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4090 ; 2.243 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1643 ; 3.745 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1599 ; 5.274 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 40 A 537 REMARK 3 ORIGIN FOR THE GROUP (A): 46.4475 102.9762 95.6873 REMARK 3 T TENSOR REMARK 3 T11: 0.0191 T22: 0.0096 REMARK 3 T33: 0.0273 T12: 0.0025 REMARK 3 T13: -0.0159 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.4908 L22: 0.3703 REMARK 3 L33: 0.3908 L12: -0.0122 REMARK 3 L13: 0.0209 L23: -0.0433 REMARK 3 S TENSOR REMARK 3 S11: 0.0062 S12: -0.0455 S13: -0.0633 REMARK 3 S21: -0.0344 S22: 0.0132 S23: 0.0225 REMARK 3 S31: 0.0339 S32: -0.0285 S33: -0.0194 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. GLYCEROL (GOL), POLYETHYLENE GLYCOL (PGE), AND REMARK 3 A SODIUM ION (NA) FROM THE CRYSTALLIZATION SOLUTION HAVE BEEN REMARK 3 MODELED INTO THE STRUCTURE.3. ATOM RECORDS CONTAIN THE SUM OF REMARK 3 TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS REMARK 3 AND RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM TLS REMARK 3 REFINEMENT. 5. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 4 REMARK 4 4F7A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000072544. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR; DOUBLE REMARK 200 CRYSTAL SI(111) MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60397 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 29.782 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.16400 REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.90 REMARK 200 R MERGE FOR SHELL (I) : 0.91600 REMARK 200 R SYM FOR SHELL (I) : 0.91600 REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17M AMMONIUM ACETATE, 15.0% REMARK 280 GLYCEROL, 25.5% POLYETHYLENE GLYCOL 4000, 0.1M SODIUM CITRATE PH REMARK 280 5.6, NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 14555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 15555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 16555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 17555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 18555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 19555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 20555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 21555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 22555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 23555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 24555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 80.18950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.18950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 80.18950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.18950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 80.18950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 80.18950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 80.18950 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 80.18950 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 80.18950 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 80.18950 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 80.18950 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 80.18950 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 80.18950 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 80.18950 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 80.18950 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 80.18950 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 80.18950 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 80.18950 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 40.09475 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 120.28425 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 120.28425 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 40.09475 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 40.09475 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 40.09475 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 120.28425 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 120.28425 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 40.09475 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 120.28425 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 40.09475 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 120.28425 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 40.09475 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 120.28425 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 120.28425 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 120.28425 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 40.09475 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 120.28425 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 40.09475 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 40.09475 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 40.09475 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 120.28425 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 120.28425 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 40.09475 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 40.09475 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 120.28425 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 120.28425 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 120.28425 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 120.28425 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 40.09475 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 120.28425 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 40.09475 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 120.28425 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 40.09475 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 40.09475 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 40.09475 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ASP A 28 REMARK 465 ASN A 29 REMARK 465 LYS A 30 REMARK 465 ILE A 31 REMARK 465 ASN A 32 REMARK 465 GLY A 33 REMARK 465 SER A 34 REMARK 465 PHE A 35 REMARK 465 ASP A 36 REMARK 465 ASP A 37 REMARK 465 THR A 38 REMARK 465 VAL A 39 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 40 CG CD CE NZ REMARK 470 TYR A 42 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 125 CD CE NZ REMARK 470 LYS A 135 CD CE NZ REMARK 470 ASN A 169 CG OD1 ND2 REMARK 470 LYS A 204 CE NZ REMARK 470 LYS A 409 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 58 -70.65 -77.58 REMARK 500 ASN A 61 45.33 -151.28 REMARK 500 THR A 69 -57.38 70.96 REMARK 500 GLN A 76 -39.85 -134.77 REMARK 500 ASN A 79 -94.02 -119.11 REMARK 500 LYS A 97 -120.99 -115.89 REMARK 500 TYR A 163 -76.79 -146.96 REMARK 500 ASP A 438 35.67 -84.07 REMARK 500 MSE A 493 167.59 77.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 604 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 810 O REMARK 620 2 HOH A 844 O 83.3 REMARK 620 3 HOH A 999 O 86.0 96.6 REMARK 620 4 HOH A1214 O 96.6 97.4 165.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 605 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-385695 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 GLY 0 FOLLOWED BY RESIDUES 28-537 OF THE TARGET SEQUENCE. DBREF 4F7A A 28 537 UNP A6L2F0 A6L2F0_BACV8 28 537 SEQADV 4F7A GLY A 0 UNP A6L2F0 EXPRESSION TAG SEQRES 1 A 511 GLY ASP ASN LYS ILE ASN GLY SER PHE ASP ASP THR VAL SEQRES 2 A 511 LYS GLU TYR ASP PHE GLN LYS TYR THR THR ASN PHE GLU SEQRES 3 A 511 THR ILE GLN LYS GLY ILE TYR PHE ASN TYR ASP TRP GLY SEQRES 4 A 511 GLU GLY THR THR TRP PRO TRP GLN THR PHE GLN ASN LEU SEQRES 5 A 511 ASN HIS ASP MSE PHE SER GLY TYR PHE HIS ASP PHE ALA SEQRES 6 A 511 SER LYS PHE SER ASP LYS ASN THR VAL TYR ALA LEU GLU SEQRES 7 A 511 ALA GLY TRP THR ALA SER ALA TRP ASN TYR THR TYR ASN SEQRES 8 A 511 TYR ILE PHE PRO VAL ALA HIS LYS SER THR LEU ILE THR SEQRES 9 A 511 GLN ASP GLU ALA LYS TYR LYS HIS PHE TYR GLY ALA THR SEQRES 10 A 511 LEU ILE LEU LYS VAL GLU ALA MSE HIS ARG ILE THR ASP SEQRES 11 A 511 THR TYR GLY PRO ILE VAL TYR SER LYS PHE GLY LYS ASN SEQRES 12 A 511 GLU THR ASN SER VAL ASP THR GLN GLU GLU ALA TYR LYS SEQRES 13 A 511 ALA PHE PHE ASP ASP LEU ASP LYS ALA VAL ASP ALA LEU SEQRES 14 A 511 ASP THR TYR LEU LYS GLU GLY GLY LYS GLU ASP GLY VAL SEQRES 15 A 511 LYS SER ILE ASN MSE CYS ASN CYS PRO THR ALA SER ARG SEQRES 16 A 511 TRP ILE LYS PHE ALA ASN SER LEU ARG LEU ARG LEU ALA SEQRES 17 A 511 MSE ARG VAL SER ASN VAL ASP LYS THR LEU ALA THR SER SEQRES 18 A 511 GLU ALA GLN LYS ALA LEU GLU ASN SER TYR GLY VAL ILE SEQRES 19 A 511 GLU SER SER ASP GLU ASN ILE GLN ILE SER GLY LYS GLY SEQRES 20 A 511 TYR GLN ASN PRO LEU ALA GLY VAL ALA GLY TRP GLY GLU SEQRES 21 A 511 THR TYR MSE GLY ALA THR ILE ALA SER VAL LEU ASN GLY SEQRES 22 A 511 TYR GLU ASP PRO ARG ILE SER ILE TYR TYR ASN PRO ALA SEQRES 23 A 511 THR LEU ALA GLU HIS THR GLU GLU TYR LEU GLY VAL PRO SEQRES 24 A 511 GLN GLY VAL TYR ALA LYS ASP GLY ASP PRO ASN TYR TYR SEQRES 25 A 511 GLN SER TYR SER PHE ILE ASN THR GLN THR ILE THR ALA SEQRES 26 A 511 SER THR PRO ALA VAL LEU LEU THR ALA ALA GLU THR TRP SEQRES 27 A 511 PHE LEU ARG ALA GLU ALA SER LEU ARG GLY ILE ASN PRO SEQRES 28 A 511 LYS ASN GLU SER ALA LYS GLN CYS TYR GLU ALA GLY VAL SEQRES 29 A 511 GLN THR SER PHE SER GLN TRP GLY ALA GLY ASP ALA SER SEQRES 30 A 511 LEU TYR LEU THR SER LYS GLY LYS PRO THR ASP TYR ILE SEQRES 31 A 511 ASN TYR ALA ALA GLY PRO GLY LYS ASP MSE LYS ALA LEU SEQRES 32 A 511 ILE THR THR THR PRO ASN PHE ASP ASP ALA VAL ASN GLN SEQRES 33 A 511 GLU GLU GLN LEU GLU LYS ILE ILE THR GLN LYS TRP ILE SEQRES 34 A 511 ALA CYS TRP PRO GLU GLY MSE GLU ALA TRP ALA GLU GLN SEQRES 35 A 511 ARG ARG THR GLY TYR PRO LYS LEU PHE LYS VAL GLN THR SEQRES 36 A 511 ASN ASN SER ASN GLY THR ILE ASP THR ASP ILE MSE ILE SEQRES 37 A 511 ARG ARG LEU PRO PHE SER GLN ASP ASP ALA LYS LYS ASP SEQRES 38 A 511 PRO GLU GLN TYR LYS ASN LEU CYS THR ALA LEU GLY GLY SEQRES 39 A 511 ALA ASP ASN GLY GLY THR ARG LEU TRP TRP ASP THR GLY SEQRES 40 A 511 LYS ASN ASN PHE MODRES 4F7A MSE A 82 MET SELENOMETHIONINE MODRES 4F7A MSE A 151 MET SELENOMETHIONINE MODRES 4F7A MSE A 213 MET SELENOMETHIONINE MODRES 4F7A MSE A 235 MET SELENOMETHIONINE MODRES 4F7A MSE A 289 MET SELENOMETHIONINE MODRES 4F7A MSE A 426 MET SELENOMETHIONINE MODRES 4F7A MSE A 462 MET SELENOMETHIONINE MODRES 4F7A MSE A 493 MET SELENOMETHIONINE HET MSE A 82 8 HET MSE A 151 8 HET MSE A 213 8 HET MSE A 235 8 HET MSE A 289 8 HET MSE A 426 8 HET MSE A 462 8 HET MSE A 493 8 HET GOL A 601 6 HET GOL A 602 6 HET PGE A 603 10 HET NA A 604 1 HET ACT A 605 4 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETNAM PGE TRIETHYLENE GLYCOL HETNAM NA SODIUM ION HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 GOL 2(C3 H8 O3) FORMUL 4 PGE C6 H14 O4 FORMUL 5 NA NA 1+ FORMUL 6 ACT C2 H3 O2 1- FORMUL 7 HOH *514(H2 O) HELIX 1 1 LYS A 40 GLY A 57 1 18 HELIX 2 2 THR A 69 GLN A 76 1 8 HELIX 3 3 ASN A 79 SER A 84 1 6 HELIX 4 4 ALA A 91 SER A 95 5 5 HELIX 5 5 LYS A 97 TYR A 101 5 5 HELIX 6 6 GLU A 104 ALA A 109 1 6 HELIX 7 7 ALA A 109 ILE A 119 1 11 HELIX 8 8 ILE A 119 GLN A 131 1 13 HELIX 9 9 GLU A 133 LYS A 135 5 3 HELIX 10 10 TYR A 136 GLY A 159 1 24 HELIX 11 11 THR A 176 GLU A 201 1 26 HELIX 12 12 LYS A 204 ASN A 212 5 9 HELIX 13 13 THR A 218 VAL A 237 1 20 HELIX 14 14 ASP A 241 ASN A 255 1 15 HELIX 15 15 SER A 262 ASN A 266 5 5 HELIX 16 16 ASN A 276 TRP A 284 1 9 HELIX 17 17 GLY A 290 TYR A 300 1 11 HELIX 18 18 ARG A 304 TYR A 309 1 6 HELIX 19 19 THR A 359 ARG A 373 1 15 HELIX 20 20 SER A 381 GLY A 398 1 18 HELIX 21 21 LEU A 404 SER A 408 5 5 HELIX 22 22 ASN A 441 TRP A 458 1 18 HELIX 23 23 GLU A 460 GLY A 472 1 13 HELIX 24 24 SER A 500 ASP A 507 1 8 HELIX 25 25 ASP A 507 GLY A 519 1 13 SHEET 1 A 2 PHE A 87 HIS A 88 0 SHEET 2 A 2 TYR A 288 MSE A 289 -1 O TYR A 288 N HIS A 88 SHEET 1 B 2 ILE A 267 ILE A 269 0 SHEET 2 B 2 ALA A 355 LEU A 358 -1 O LEU A 357 N ILE A 267 LINK C ASP A 81 N MSE A 82 1555 1555 1.33 LINK C MSE A 82 N PHE A 83 1555 1555 1.34 LINK C ALA A 150 N MSE A 151 1555 1555 1.33 LINK C MSE A 151 N HIS A 152 1555 1555 1.33 LINK C ASN A 212 N MSE A 213 1555 1555 1.32 LINK C MSE A 213 N CYS A 214 1555 1555 1.33 LINK C ALA A 234 N MSE A 235 1555 1555 1.33 LINK C MSE A 235 N ARG A 236 1555 1555 1.33 LINK C TYR A 288 N MSE A 289 1555 1555 1.32 LINK C MSE A 289 N GLY A 290 1555 1555 1.34 LINK C ASP A 425 N MSE A 426 1555 1555 1.33 LINK C MSE A 426 N LYS A 427 1555 1555 1.33 LINK C GLY A 461 N MSE A 462 1555 1555 1.33 LINK C MSE A 462 N GLU A 463 1555 1555 1.33 LINK C ILE A 492 N MSE A 493 1555 1555 1.33 LINK C MSE A 493 N ILE A 494 1555 1555 1.33 LINK NA NA A 604 O HOH A 810 1555 1555 2.64 LINK NA NA A 604 O HOH A 844 1555 1555 2.32 LINK NA NA A 604 O HOH A 999 1555 1555 2.34 LINK NA NA A 604 O HOH A1214 1555 1555 2.32 CISPEP 1 TRP A 458 PRO A 459 0 6.09 CISPEP 2 TYR A 473 PRO A 474 0 -6.21 SITE 1 AC1 6 TYR A 116 ASP A 503 GLN A 510 GOL A 602 SITE 2 AC1 6 HOH A 865 HOH A1212 SITE 1 AC2 7 ASN A 113 TYR A 116 ASN A 117 ASP A 502 SITE 2 AC2 7 ASP A 503 LYS A 506 GOL A 601 SITE 1 AC3 4 GLY A 283 TYR A 288 HOH A1205 HOH A1206 SITE 1 AC4 6 HOH A 757 HOH A 810 HOH A 836 HOH A 844 SITE 2 AC4 6 HOH A 999 HOH A1214 SITE 1 AC5 4 GLY A 271 LYS A 272 GLY A 273 HOH A1139 CRYST1 160.379 160.379 160.379 90.00 90.00 90.00 P 43 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006235 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006235 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006235 0.00000