data_4F7V
#
_entry.id 4F7V
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.379
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 4F7V pdb_00004f7v 10.2210/pdb4f7v/pdb
RCSB RCSB072565 ? ?
WWPDB D_1000072565 ? ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 1EX8 'Crystal structure of E. coli HPPK in complex with bisubstrate analogue inhibitor A4P (HP4A)' unspecified
PDB 3UD5 'Crystal structure of E. coli HPPK in complex with bisubstrate analogue inhibitor J1A (HP19)' unspecified
PDB 3UDE 'Crystal structure of E. coli HPPK in complex with bisubstrate analogue inhibitor J1B (HP17)' unspecified
PDB 3UDV 'Crystal structure of E. coli HPPK in complex with bisubstrate analogue inhibitor J1C (HP18)' unspecified
#
_pdbx_database_status.entry_id 4F7V
_pdbx_database_status.status_code REL
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.recvd_initial_deposition_date 2012-05-16
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Shaw, G.' 1 ?
'Shi, G.' 2 ?
'Ji, X.' 3 0000-0001-6942-1514
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.journal_id_ASTM
_citation.country
_citation.journal_id_ISSN
_citation.journal_id_CSD
_citation.book_publisher
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary
'Bisubstrate analog inhibitors of 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase: New lead exhibits a distinct binding mode.'
Bioorg.Med.Chem. 20 4303 4309 2012 BMECEP UK 0968-0896 1200 ? 22727779 10.1016/j.bmc.2012.05.060
1
;Bisubstrate analogue inhibitors of 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase: synthesis and biochemical and crystallographic studies.
;
J.Med.Chem. 44 1364 1371 2001 JMCMAR US 0022-2623 0151 ? 11311059 ?
2
'Bisubstrate analogue inhibitors of 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase: New design with improved properties.'
Bioorg.Med.Chem. 20 47 57 2012 BMECEP UK 0968-0896 1200 ? 22169600 10.1016/j.bmc.2011.11.032
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Shi, G.' 1 ?
primary 'Shaw, G.' 2 ?
primary 'Li, Y.' 3 ?
primary 'Wu, Y.' 4 ?
primary 'Yan, H.' 5 ?
primary 'Ji, X.' 6 0000-0001-6942-1514
1 'Shi, G.' 7 ?
1 'Blaszczyk, J.' 8 ?
1 'Ji, X.' 9 ?
1 'Yan, H.' 10 ?
2 'Shi, G.' 11 ?
2 'Shaw, G.' 12 ?
2 'Liang, Y.H.' 13 ?
2 'Subburaman, P.' 14 ?
2 'Li, Y.' 15 ?
2 'Wu, Y.' 16 ?
2 'Yan, H.' 17 ?
2 'Ji, X.' 18 ?
#
_cell.entry_id 4F7V
_cell.length_a 53.118
_cell.length_b 70.581
_cell.length_c 36.261
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 4
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 4F7V
_symmetry.space_group_name_H-M 'P 21 21 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 18
_symmetry.space_group_name_Hall ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer man '2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase' 17966.535 1 2.7.6.3 ? ? ?
2 non-polymer syn
"5'-{[2-({N-[(2-amino-7,7-dimethyl-4-oxo-3,4,7,8-tetrahydropteridin-6-yl)carbonyl]glycyl}amino)ethyl]sulfonyl}-5'-deoxyadenosine"
634.625 1 ? ? ? ?
3 water nat water 18.015 171 ? ? ? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name
'6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, PPPK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK'
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code
;TVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQ
GRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW
;
_entity_poly.pdbx_seq_one_letter_code_can
;TVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQ
GRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW
;
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 THR n
1 2 VAL n
1 3 ALA n
1 4 TYR n
1 5 ILE n
1 6 ALA n
1 7 ILE n
1 8 GLY n
1 9 SER n
1 10 ASN n
1 11 LEU n
1 12 ALA n
1 13 SER n
1 14 PRO n
1 15 LEU n
1 16 GLU n
1 17 GLN n
1 18 VAL n
1 19 ASN n
1 20 ALA n
1 21 ALA n
1 22 LEU n
1 23 LYS n
1 24 ALA n
1 25 LEU n
1 26 GLY n
1 27 ASP n
1 28 ILE n
1 29 PRO n
1 30 GLU n
1 31 SER n
1 32 HIS n
1 33 ILE n
1 34 LEU n
1 35 THR n
1 36 VAL n
1 37 SER n
1 38 SER n
1 39 PHE n
1 40 TYR n
1 41 ARG n
1 42 THR n
1 43 PRO n
1 44 PRO n
1 45 LEU n
1 46 GLY n
1 47 PRO n
1 48 GLN n
1 49 ASP n
1 50 GLN n
1 51 PRO n
1 52 ASP n
1 53 TYR n
1 54 LEU n
1 55 ASN n
1 56 ALA n
1 57 ALA n
1 58 VAL n
1 59 ALA n
1 60 LEU n
1 61 GLU n
1 62 THR n
1 63 SER n
1 64 LEU n
1 65 ALA n
1 66 PRO n
1 67 GLU n
1 68 GLU n
1 69 LEU n
1 70 LEU n
1 71 ASN n
1 72 HIS n
1 73 THR n
1 74 GLN n
1 75 ARG n
1 76 ILE n
1 77 GLU n
1 78 LEU n
1 79 GLN n
1 80 GLN n
1 81 GLY n
1 82 ARG n
1 83 VAL n
1 84 ARG n
1 85 LYS n
1 86 ALA n
1 87 GLU n
1 88 ARG n
1 89 TRP n
1 90 GLY n
1 91 PRO n
1 92 ARG n
1 93 THR n
1 94 LEU n
1 95 ASP n
1 96 LEU n
1 97 ASP n
1 98 ILE n
1 99 MET n
1 100 LEU n
1 101 PHE n
1 102 GLY n
1 103 ASN n
1 104 GLU n
1 105 VAL n
1 106 ILE n
1 107 ASN n
1 108 THR n
1 109 GLU n
1 110 ARG n
1 111 LEU n
1 112 THR n
1 113 VAL n
1 114 PRO n
1 115 HIS n
1 116 TYR n
1 117 ASP n
1 118 MET n
1 119 LYS n
1 120 ASN n
1 121 ARG n
1 122 GLY n
1 123 PHE n
1 124 MET n
1 125 LEU n
1 126 TRP n
1 127 PRO n
1 128 LEU n
1 129 PHE n
1 130 GLU n
1 131 ILE n
1 132 ALA n
1 133 PRO n
1 134 GLU n
1 135 LEU n
1 136 VAL n
1 137 PHE n
1 138 PRO n
1 139 ASP n
1 140 GLY n
1 141 GLU n
1 142 MET n
1 143 LEU n
1 144 ARG n
1 145 GLN n
1 146 ILE n
1 147 LEU n
1 148 HIS n
1 149 THR n
1 150 ARG n
1 151 ALA n
1 152 PHE n
1 153 ASP n
1 154 LYS n
1 155 LEU n
1 156 ASN n
1 157 LYS n
1 158 TRP n
#
_entity_src_gen.entity_id 1
_entity_src_gen.pdbx_src_id 1
_entity_src_gen.pdbx_alt_source_flag sample
_entity_src_gen.pdbx_seq_type ?
_entity_src_gen.pdbx_beg_seq_num ?
_entity_src_gen.pdbx_end_seq_num ?
_entity_src_gen.gene_src_common_name ?
_entity_src_gen.gene_src_genus ?
_entity_src_gen.pdbx_gene_src_gene 'b0142, foIK, folK, JW0138'
_entity_src_gen.gene_src_species ?
_entity_src_gen.gene_src_strain K12
_entity_src_gen.gene_src_tissue ?
_entity_src_gen.gene_src_tissue_fraction ?
_entity_src_gen.gene_src_details ?
_entity_src_gen.pdbx_gene_src_fragment ?
_entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli'
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333
_entity_src_gen.pdbx_gene_src_variant ?
_entity_src_gen.pdbx_gene_src_cell_line ?
_entity_src_gen.pdbx_gene_src_atcc ?
_entity_src_gen.pdbx_gene_src_organ ?
_entity_src_gen.pdbx_gene_src_organelle ?
_entity_src_gen.pdbx_gene_src_cell ?
_entity_src_gen.pdbx_gene_src_cellular_location ?
_entity_src_gen.host_org_common_name ?
_entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli'
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008
_entity_src_gen.host_org_genus ?
_entity_src_gen.pdbx_host_org_gene ?
_entity_src_gen.pdbx_host_org_organ ?
_entity_src_gen.host_org_species ?
_entity_src_gen.pdbx_host_org_tissue ?
_entity_src_gen.pdbx_host_org_tissue_fraction ?
_entity_src_gen.pdbx_host_org_strain 'BL21(DE3)'
_entity_src_gen.pdbx_host_org_variant ?
_entity_src_gen.pdbx_host_org_cell_line ?
_entity_src_gen.pdbx_host_org_atcc ?
_entity_src_gen.pdbx_host_org_culture_collection ?
_entity_src_gen.pdbx_host_org_cell ?
_entity_src_gen.pdbx_host_org_organelle ?
_entity_src_gen.pdbx_host_org_cellular_location ?
_entity_src_gen.pdbx_host_org_vector_type plasmid
_entity_src_gen.pdbx_host_org_vector ?
_entity_src_gen.host_org_details ?
_entity_src_gen.expression_system_id ?
_entity_src_gen.plasmid_name pET17b
_entity_src_gen.plasmid_details ?
_entity_src_gen.pdbx_description ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code HPPK_ECOLI
_struct_ref.pdbx_db_accession P26281
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code
;TVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQ
GRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW
;
_struct_ref.pdbx_align_begin 2
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 4F7V
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 158
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession P26281
_struct_ref_seq.db_align_beg 2
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 159
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 158
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
HOH non-polymer . WATER ? 'H2 O' 18.015
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
J1D non-polymer .
"5'-{[2-({N-[(2-amino-7,7-dimethyl-4-oxo-3,4,7,8-tetrahydropteridin-6-yl)carbonyl]glycyl}amino)ethyl]sulfonyl}-5'-deoxyadenosine"
? 'C23 H30 N12 O8 S' 634.625
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
_exptl.crystals_number 1
_exptl.entry_id 4F7V
_exptl.method 'X-RAY DIFFRACTION'
#
_exptl_crystal.id 1
_exptl_crystal.density_Matthews 1.89
_exptl_crystal.density_meas ?
_exptl_crystal.density_percent_sol 34.98
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.pH 7.5
_exptl_crystal_grow.temp 292
_exptl_crystal_grow.pdbx_details 'PEG 3350, NaCl, HEPES, pH 7.5, vapor diffusion, sitting drop, temperature 292K'
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'MARMOSAIC 225 mm CCD'
_diffrn_detector.pdbx_collection_date 2010-07-17
_diffrn_detector.details mirrors
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.monochromator GRAPHITE
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.0
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'APS BEAMLINE 22-BM'
_diffrn_source.pdbx_wavelength_list 1.0
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_site APS
_diffrn_source.pdbx_synchrotron_beamline 22-BM
#
_reflns.entry_id 4F7V
_reflns.d_resolution_high 1.670
_reflns.d_resolution_low 30.000
_reflns.number_obs 14746
_reflns.pdbx_Rmerge_I_obs 0.086
_reflns.pdbx_netI_over_sigmaI 9.100
_reflns.pdbx_chi_squared 1.000
_reflns.pdbx_redundancy 4.900
_reflns.percent_possible_obs 89.000
_reflns.observed_criterion_sigma_F -6
_reflns.observed_criterion_sigma_I -3
_reflns.number_all 14746
_reflns.pdbx_Rsym_value ?
_reflns.B_iso_Wilson_estimate 16.58
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.number_measured_obs
_reflns_shell.number_measured_all
_reflns_shell.number_unique_obs
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_redundancy
_reflns_shell.percent_possible_obs
_reflns_shell.number_unique_all
_reflns_shell.percent_possible_all
_reflns_shell.pdbx_ordinal
_reflns_shell.pdbx_diffrn_id
1.670 1.730 ? ? ? 0.411 1.85 ? 1.000 2.500 ? 802 49.100 1 1
1.730 1.800 ? ? ? 0.377 2.42 ? 1.000 3.100 ? 1054 65.800 2 1
1.800 1.880 ? ? ? 0.325 3.51 ? 1.000 4.000 ? 1361 83.100 3 1
1.880 1.980 ? ? ? 0.248 5.31 ? 0.998 4.600 ? 1497 92.500 4 1
1.980 2.100 ? ? ? 0.192 7.11 ? 1.002 5.100 ? 1624 99.000 5 1
2.100 2.270 ? ? ? 0.145 10.03 ? 1.001 5.300 ? 1631 99.500 6 1
2.270 2.490 ? ? ? 0.108 13.89 ? 0.998 5.500 ? 1635 99.600 7 1
2.490 2.860 ? ? ? 0.094 16.20 ? 1.000 5.500 ? 1658 99.800 8 1
2.860 3.600 ? ? ? 0.083 17.47 ? 0.999 5.700 ? 1700 99.800 9 1
3.600 30.000 ? ? ? 0.049 28.60 ? 1.001 5.600 ? 1784 99.600 10 1
#
_refine.entry_id 4F7V
_refine.ls_d_res_high 1.7300
_refine.ls_d_res_low 27.5690
_refine.pdbx_ls_sigma_F 1.340
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.ls_percent_reflns_obs 93.5700
_refine.ls_number_reflns_obs 13829
_refine.ls_number_reflns_all 13829
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_R_Free_selection_details Random
_refine.details ?
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.1755
_refine.ls_R_factor_R_work 0.1722
_refine.ls_wR_factor_R_work ?
_refine.ls_R_factor_R_free 0.2220
_refine.ls_wR_factor_R_free ?
_refine.ls_percent_reflns_R_free 6.8000
_refine.ls_number_reflns_R_free 940
_refine.ls_R_factor_R_free_error ?
_refine.B_iso_mean 20.4850
_refine.solvent_model_param_bsol 46.9900
_refine.solvent_model_param_ksol 0.3710
_refine.pdbx_isotropic_thermal_model ?
_refine.aniso_B[1][1] 0.0000
_refine.aniso_B[2][2] 0.0000
_refine.aniso_B[3][3] 0.0000
_refine.aniso_B[1][2] 0.0000
_refine.aniso_B[1][3] 0.0000
_refine.aniso_B[2][3] 0.0000
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML 0.5100
_refine.overall_SU_B ?
_refine.solvent_model_details 'FLAT BULK SOLVENT MODEL'
_refine.pdbx_solvent_vdw_probe_radii 1.1100
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii 0.9000
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.pdbx_starting_model 'PDB entry 3UDV'
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_stereochemistry_target_values ML
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.overall_FOM_work_R_set ?
_refine.B_iso_max 97.750
_refine.B_iso_min 3.670
_refine.pdbx_overall_phase_error 22.7000
_refine.occupancy_max 1.000
_refine.occupancy_min 0.310
_refine.pdbx_ls_sigma_I ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_R_factor_R_free_error_details ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.overall_FOM_free_R_set ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 1267
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 44
_refine_hist.number_atoms_solvent 171
_refine_hist.number_atoms_total 1482
_refine_hist.d_res_high 1.7300
_refine_hist.d_res_low 27.5690
#
loop_
_refine_ls_restr.type
_refine_ls_restr.number
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
_refine_ls_restr.pdbx_refine_id
f_bond_d 1372 0.012 ? ? ? 'X-RAY DIFFRACTION'
f_angle_d 1881 1.379 ? ? ? 'X-RAY DIFFRACTION'
f_chiral_restr 206 0.076 ? ? ? 'X-RAY DIFFRACTION'
f_plane_restr 242 0.008 ? ? ? 'X-RAY DIFFRACTION'
f_dihedral_angle_d 533 15.384 ? ? ? 'X-RAY DIFFRACTION'
#
loop_
_refine_ls_shell.d_res_high
_refine_ls_shell.d_res_low
_refine_ls_shell.pdbx_total_number_of_bins_used
_refine_ls_shell.percent_reflns_obs
_refine_ls_shell.number_reflns_R_work
_refine_ls_shell.R_factor_all
_refine_ls_shell.R_factor_R_work
_refine_ls_shell.R_factor_R_free
_refine_ls_shell.percent_reflns_R_free
_refine_ls_shell.number_reflns_R_free
_refine_ls_shell.R_factor_R_free_error
_refine_ls_shell.number_reflns_all
_refine_ls_shell.number_reflns_obs
_refine_ls_shell.redundancy_reflns_obs
_refine_ls_shell.pdbx_refine_id
1.730 1.8213 7 70.0000 1322 . 0.2770 0.3490 . 97 . 1419 1419 . 'X-RAY DIFFRACTION'
1.8213 1.9354 7 88.0000 1693 . 0.2366 0.2959 . 123 . 1816 1816 . 'X-RAY DIFFRACTION'
1.9354 2.0848 7 98.0000 1899 . 0.2006 0.2512 . 139 . 2038 2038 . 'X-RAY DIFFRACTION'
2.0848 2.2945 7 99.0000 1947 . 0.1829 0.2496 . 141 . 2088 2088 . 'X-RAY DIFFRACTION'
2.2945 2.6263 7 100.0000 1945 . 0.1734 0.2261 . 142 . 2087 2087 . 'X-RAY DIFFRACTION'
2.6263 3.3079 7 100.0000 2005 . 0.1589 0.2355 . 147 . 2152 2152 . 'X-RAY DIFFRACTION'
3.3079 27.5726 7 100.0000 2078 . 0.1438 0.1686 . 151 . 2229 2229 . 'X-RAY DIFFRACTION'
#
_struct.entry_id 4F7V
_struct.title 'Crystal structure of E. coli HPPK in complex with bisubstrate analogue inhibitor J1D (HP26)'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 4F7V
_struct_keywords.text
'alpha beta, pyrophosphokinase, pyrophosphoryl transfer, TRANSFERASE-TRANSFERASE INHIBITOR complex'
_struct_keywords.pdbx_keywords 'TRANSFERASE/TRANSFERASE INHIBITOR'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
#
_struct_biol.id 1
_struct_biol.details ?
#
loop_
_struct_conf.conf_type_id
_struct_conf.id
_struct_conf.pdbx_PDB_helix_id
_struct_conf.beg_label_comp_id
_struct_conf.beg_label_asym_id
_struct_conf.beg_label_seq_id
_struct_conf.pdbx_beg_PDB_ins_code
_struct_conf.end_label_comp_id
_struct_conf.end_label_asym_id
_struct_conf.end_label_seq_id
_struct_conf.pdbx_end_PDB_ins_code
_struct_conf.beg_auth_comp_id
_struct_conf.beg_auth_asym_id
_struct_conf.beg_auth_seq_id
_struct_conf.end_auth_comp_id
_struct_conf.end_auth_asym_id
_struct_conf.end_auth_seq_id
_struct_conf.pdbx_PDB_helix_class
_struct_conf.details
_struct_conf.pdbx_PDB_helix_length
HELX_P HELX_P1 1 PRO A 14 ? ILE A 28 ? PRO A 14 ILE A 28 1 ? 15
HELX_P HELX_P2 2 ALA A 65 ? GLY A 81 ? ALA A 65 GLY A 81 1 ? 17
HELX_P HELX_P3 3 ASP A 117 ? ASN A 120 ? ASP A 117 ASN A 120 5 ? 4
HELX_P HELX_P4 4 ARG A 121 ? ALA A 132 ? ARG A 121 ALA A 132 1 ? 12
HELX_P HELX_P5 5 MET A 142 ? ALA A 151 ? MET A 142 ALA A 151 1 ? 10
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
loop_
_struct_mon_prot_cis.pdbx_id
_struct_mon_prot_cis.label_comp_id
_struct_mon_prot_cis.label_seq_id
_struct_mon_prot_cis.label_asym_id
_struct_mon_prot_cis.label_alt_id
_struct_mon_prot_cis.pdbx_PDB_ins_code
_struct_mon_prot_cis.auth_comp_id
_struct_mon_prot_cis.auth_seq_id
_struct_mon_prot_cis.auth_asym_id
_struct_mon_prot_cis.pdbx_label_comp_id_2
_struct_mon_prot_cis.pdbx_label_seq_id_2
_struct_mon_prot_cis.pdbx_label_asym_id_2
_struct_mon_prot_cis.pdbx_PDB_ins_code_2
_struct_mon_prot_cis.pdbx_auth_comp_id_2
_struct_mon_prot_cis.pdbx_auth_seq_id_2
_struct_mon_prot_cis.pdbx_auth_asym_id_2
_struct_mon_prot_cis.pdbx_PDB_model_num
_struct_mon_prot_cis.pdbx_omega_angle
1 GLY 90 A . ? GLY 90 A PRO 91 A ? PRO 91 A 1 -0.04
2 VAL 113 A . ? VAL 113 A PRO 114 A ? PRO 114 A 1 -4.44
#
loop_
_struct_sheet.id
_struct_sheet.type
_struct_sheet.number_strands
_struct_sheet.details
A ? 4 ?
B ? 4 ?
C ? 2 ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
A 1 2 ? anti-parallel
A 2 3 ? anti-parallel
A 3 4 ? anti-parallel
B 1 2 ? anti-parallel
B 2 3 ? anti-parallel
B 3 4 ? anti-parallel
C 1 2 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
A 1 SER A 31 ? VAL A 36 ? SER A 31 VAL A 36
A 2 TYR A 53 ? THR A 62 ? TYR A 53 THR A 62
A 3 VAL A 2 ? SER A 9 ? VAL A 2 SER A 9
A 4 ASP A 95 ? PHE A 101 ? ASP A 95 PHE A 101
B 1 SER A 31 ? VAL A 36 ? SER A 31 VAL A 36
B 2 TYR A 53 ? THR A 62 ? TYR A 53 THR A 62
B 3 TYR A 40 ? THR A 42 ? TYR A 40 THR A 42
B 4 ASN A 156 ? LYS A 157 ? ASN A 156 LYS A 157
C 1 ILE A 106 ? ASN A 107 ? ILE A 106 ASN A 107
C 2 THR A 112 ? VAL A 113 ? THR A 112 VAL A 113
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
A 1 2 N LEU A 34 ? N LEU A 34 O ALA A 59 ? O ALA A 59
A 2 3 O LEU A 60 ? O LEU A 60 N ALA A 3 ? N ALA A 3
A 3 4 N TYR A 4 ? N TYR A 4 O MET A 99 ? O MET A 99
B 1 2 N LEU A 34 ? N LEU A 34 O ALA A 59 ? O ALA A 59
B 2 3 O ASN A 55 ? O ASN A 55 N TYR A 40 ? N TYR A 40
B 3 4 N ARG A 41 ? N ARG A 41 O ASN A 156 ? O ASN A 156
C 1 2 N ILE A 106 ? N ILE A 106 O VAL A 113 ? O VAL A 113
#
_struct_site.id AC1
_struct_site.pdbx_evidence_code Software
_struct_site.pdbx_auth_asym_id A
_struct_site.pdbx_auth_comp_id J1D
_struct_site.pdbx_auth_seq_id 201
_struct_site.pdbx_auth_ins_code ?
_struct_site.pdbx_num_residues 30
_struct_site.details 'BINDING SITE FOR RESIDUE J1D A 201'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 30 THR A 42 ? THR A 42 . ? 1_555 ?
2 AC1 30 PRO A 43 ? PRO A 43 . ? 1_555 ?
3 AC1 30 LEU A 45 ? LEU A 45 . ? 1_555 ?
4 AC1 30 TYR A 53 ? TYR A 53 . ? 1_555 ?
5 AC1 30 ASN A 55 ? ASN A 55 . ? 1_555 ?
6 AC1 30 LEU A 70 ? LEU A 70 . ? 1_555 ?
7 AC1 30 GLN A 74 ? GLN A 74 . ? 1_555 ?
8 AC1 30 GLU A 77 ? GLU A 77 . ? 1_555 ?
9 AC1 30 LYS A 85 ? LYS A 85 . ? 1_555 ?
10 AC1 30 TRP A 89 ? TRP A 89 . ? 1_555 ?
11 AC1 30 GLY A 90 ? GLY A 90 . ? 1_555 ?
12 AC1 30 ARG A 92 ? ARG A 92 . ? 1_555 ?
13 AC1 30 ASP A 95 ? ASP A 95 . ? 1_555 ?
14 AC1 30 LEU A 96 ? LEU A 96 . ? 1_555 ?
15 AC1 30 ASP A 97 ? ASP A 97 . ? 1_555 ?
16 AC1 30 ILE A 98 ? ILE A 98 . ? 1_555 ?
17 AC1 30 ARG A 110 ? ARG A 110 . ? 1_555 ?
18 AC1 30 LEU A 111 ? LEU A 111 . ? 1_555 ?
19 AC1 30 THR A 112 ? THR A 112 . ? 1_555 ?
20 AC1 30 TYR A 116 ? TYR A 116 . ? 1_555 ?
21 AC1 30 ARG A 121 ? ARG A 121 . ? 1_555 ?
22 AC1 30 PHE A 123 ? PHE A 123 . ? 1_555 ?
23 AC1 30 HIS A 148 ? HIS A 148 . ? 1_556 ?
24 AC1 30 HOH C . ? HOH A 369 . ? 1_555 ?
25 AC1 30 HOH C . ? HOH A 370 . ? 1_555 ?
26 AC1 30 HOH C . ? HOH A 378 . ? 1_555 ?
27 AC1 30 HOH C . ? HOH A 398 . ? 1_555 ?
28 AC1 30 HOH C . ? HOH A 433 . ? 1_555 ?
29 AC1 30 HOH C . ? HOH A 450 . ? 1_555 ?
30 AC1 30 HOH C . ? HOH A 458 . ? 1_555 ?
#
_atom_sites.entry_id 4F7V
_atom_sites.fract_transf_matrix[1][1] 0.018826
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.014168
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.027578
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
S
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 THR 1 1 1 THR THR A . n
A 1 2 VAL 2 2 2 VAL VAL A . n
A 1 3 ALA 3 3 3 ALA ALA A . n
A 1 4 TYR 4 4 4 TYR TYR A . n
A 1 5 ILE 5 5 5 ILE ILE A . n
A 1 6 ALA 6 6 6 ALA ALA A . n
A 1 7 ILE 7 7 7 ILE ILE A . n
A 1 8 GLY 8 8 8 GLY GLY A . n
A 1 9 SER 9 9 9 SER SER A . n
A 1 10 ASN 10 10 10 ASN ASN A . n
A 1 11 LEU 11 11 11 LEU LEU A . n
A 1 12 ALA 12 12 12 ALA ALA A . n
A 1 13 SER 13 13 13 SER SER A . n
A 1 14 PRO 14 14 14 PRO PRO A . n
A 1 15 LEU 15 15 15 LEU LEU A . n
A 1 16 GLU 16 16 16 GLU GLU A . n
A 1 17 GLN 17 17 17 GLN GLN A . n
A 1 18 VAL 18 18 18 VAL VAL A . n
A 1 19 ASN 19 19 19 ASN ASN A . n
A 1 20 ALA 20 20 20 ALA ALA A . n
A 1 21 ALA 21 21 21 ALA ALA A . n
A 1 22 LEU 22 22 22 LEU LEU A . n
A 1 23 LYS 23 23 23 LYS LYS A . n
A 1 24 ALA 24 24 24 ALA ALA A . n
A 1 25 LEU 25 25 25 LEU LEU A . n
A 1 26 GLY 26 26 26 GLY GLY A . n
A 1 27 ASP 27 27 27 ASP ASP A . n
A 1 28 ILE 28 28 28 ILE ILE A . n
A 1 29 PRO 29 29 29 PRO PRO A . n
A 1 30 GLU 30 30 30 GLU GLU A . n
A 1 31 SER 31 31 31 SER SER A . n
A 1 32 HIS 32 32 32 HIS HIS A . n
A 1 33 ILE 33 33 33 ILE ILE A . n
A 1 34 LEU 34 34 34 LEU LEU A . n
A 1 35 THR 35 35 35 THR THR A . n
A 1 36 VAL 36 36 36 VAL VAL A . n
A 1 37 SER 37 37 37 SER SER A . n
A 1 38 SER 38 38 38 SER SER A . n
A 1 39 PHE 39 39 39 PHE PHE A . n
A 1 40 TYR 40 40 40 TYR TYR A . n
A 1 41 ARG 41 41 41 ARG ARG A . n
A 1 42 THR 42 42 42 THR THR A . n
A 1 43 PRO 43 43 43 PRO PRO A . n
A 1 44 PRO 44 44 44 PRO PRO A . n
A 1 45 LEU 45 45 45 LEU LEU A . n
A 1 46 GLY 46 46 46 GLY GLY A . n
A 1 47 PRO 47 47 47 PRO PRO A . n
A 1 48 GLN 48 48 48 GLN GLN A . n
A 1 49 ASP 49 49 49 ASP ASP A . n
A 1 50 GLN 50 50 50 GLN GLN A . n
A 1 51 PRO 51 51 51 PRO PRO A . n
A 1 52 ASP 52 52 52 ASP ASP A . n
A 1 53 TYR 53 53 53 TYR TYR A . n
A 1 54 LEU 54 54 54 LEU LEU A . n
A 1 55 ASN 55 55 55 ASN ASN A . n
A 1 56 ALA 56 56 56 ALA ALA A . n
A 1 57 ALA 57 57 57 ALA ALA A . n
A 1 58 VAL 58 58 58 VAL VAL A . n
A 1 59 ALA 59 59 59 ALA ALA A . n
A 1 60 LEU 60 60 60 LEU LEU A . n
A 1 61 GLU 61 61 61 GLU GLU A . n
A 1 62 THR 62 62 62 THR THR A . n
A 1 63 SER 63 63 63 SER SER A . n
A 1 64 LEU 64 64 64 LEU LEU A . n
A 1 65 ALA 65 65 65 ALA ALA A . n
A 1 66 PRO 66 66 66 PRO PRO A . n
A 1 67 GLU 67 67 67 GLU GLU A . n
A 1 68 GLU 68 68 68 GLU GLU A . n
A 1 69 LEU 69 69 69 LEU LEU A . n
A 1 70 LEU 70 70 70 LEU LEU A . n
A 1 71 ASN 71 71 71 ASN ASN A . n
A 1 72 HIS 72 72 72 HIS HIS A . n
A 1 73 THR 73 73 73 THR THR A . n
A 1 74 GLN 74 74 74 GLN GLN A . n
A 1 75 ARG 75 75 75 ARG ARG A . n
A 1 76 ILE 76 76 76 ILE ILE A . n
A 1 77 GLU 77 77 77 GLU GLU A . n
A 1 78 LEU 78 78 78 LEU LEU A . n
A 1 79 GLN 79 79 79 GLN GLN A . n
A 1 80 GLN 80 80 80 GLN GLN A . n
A 1 81 GLY 81 81 81 GLY GLY A . n
A 1 82 ARG 82 82 82 ARG ARG A . n
A 1 83 VAL 83 83 83 VAL VAL A . n
A 1 84 ARG 84 84 84 ARG ARG A . n
A 1 85 LYS 85 85 85 LYS LYS A . n
A 1 86 ALA 86 86 86 ALA ALA A . n
A 1 87 GLU 87 87 87 GLU GLU A . n
A 1 88 ARG 88 88 88 ARG ARG A . n
A 1 89 TRP 89 89 89 TRP TRP A . n
A 1 90 GLY 90 90 90 GLY GLY A . n
A 1 91 PRO 91 91 91 PRO PRO A . n
A 1 92 ARG 92 92 92 ARG ARG A . n
A 1 93 THR 93 93 93 THR THR A . n
A 1 94 LEU 94 94 94 LEU LEU A . n
A 1 95 ASP 95 95 95 ASP ASP A . n
A 1 96 LEU 96 96 96 LEU LEU A . n
A 1 97 ASP 97 97 97 ASP ASP A . n
A 1 98 ILE 98 98 98 ILE ILE A . n
A 1 99 MET 99 99 99 MET MET A . n
A 1 100 LEU 100 100 100 LEU LEU A . n
A 1 101 PHE 101 101 101 PHE PHE A . n
A 1 102 GLY 102 102 102 GLY GLY A . n
A 1 103 ASN 103 103 103 ASN ASN A . n
A 1 104 GLU 104 104 104 GLU GLU A . n
A 1 105 VAL 105 105 105 VAL VAL A . n
A 1 106 ILE 106 106 106 ILE ILE A . n
A 1 107 ASN 107 107 107 ASN ASN A . n
A 1 108 THR 108 108 108 THR THR A . n
A 1 109 GLU 109 109 109 GLU GLU A . n
A 1 110 ARG 110 110 110 ARG ARG A . n
A 1 111 LEU 111 111 111 LEU LEU A . n
A 1 112 THR 112 112 112 THR THR A . n
A 1 113 VAL 113 113 113 VAL VAL A . n
A 1 114 PRO 114 114 114 PRO PRO A . n
A 1 115 HIS 115 115 115 HIS HIS A . n
A 1 116 TYR 116 116 116 TYR TYR A . n
A 1 117 ASP 117 117 117 ASP ASP A . n
A 1 118 MET 118 118 118 MET MET A . n
A 1 119 LYS 119 119 119 LYS LYS A . n
A 1 120 ASN 120 120 120 ASN ASN A . n
A 1 121 ARG 121 121 121 ARG ARG A . n
A 1 122 GLY 122 122 122 GLY GLY A . n
A 1 123 PHE 123 123 123 PHE PHE A . n
A 1 124 MET 124 124 124 MET MET A . n
A 1 125 LEU 125 125 125 LEU LEU A . n
A 1 126 TRP 126 126 126 TRP TRP A . n
A 1 127 PRO 127 127 127 PRO PRO A . n
A 1 128 LEU 128 128 128 LEU LEU A . n
A 1 129 PHE 129 129 129 PHE PHE A . n
A 1 130 GLU 130 130 130 GLU GLU A . n
A 1 131 ILE 131 131 131 ILE ILE A . n
A 1 132 ALA 132 132 132 ALA ALA A . n
A 1 133 PRO 133 133 133 PRO PRO A . n
A 1 134 GLU 134 134 134 GLU GLU A . n
A 1 135 LEU 135 135 135 LEU LEU A . n
A 1 136 VAL 136 136 136 VAL VAL A . n
A 1 137 PHE 137 137 137 PHE PHE A . n
A 1 138 PRO 138 138 138 PRO PRO A . n
A 1 139 ASP 139 139 139 ASP ASP A . n
A 1 140 GLY 140 140 140 GLY GLY A . n
A 1 141 GLU 141 141 141 GLU GLU A . n
A 1 142 MET 142 142 142 MET MET A . n
A 1 143 LEU 143 143 143 LEU LEU A . n
A 1 144 ARG 144 144 144 ARG ARG A . n
A 1 145 GLN 145 145 145 GLN GLN A . n
A 1 146 ILE 146 146 146 ILE ILE A . n
A 1 147 LEU 147 147 147 LEU LEU A . n
A 1 148 HIS 148 148 148 HIS HIS A . n
A 1 149 THR 149 149 149 THR THR A . n
A 1 150 ARG 150 150 150 ARG ARG A . n
A 1 151 ALA 151 151 151 ALA ALA A . n
A 1 152 PHE 152 152 152 PHE PHE A . n
A 1 153 ASP 153 153 153 ASP ASP A . n
A 1 154 LYS 154 154 154 LYS LYS A . n
A 1 155 LEU 155 155 155 LEU LEU A . n
A 1 156 ASN 156 156 156 ASN ASN A . n
A 1 157 LYS 157 157 157 LYS LYS A . n
A 1 158 TRP 158 158 158 TRP TRP A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 J1D 1 201 171 J1D J1D A .
C 3 HOH 1 301 201 HOH HOH A .
C 3 HOH 2 302 202 HOH HOH A .
C 3 HOH 3 303 203 HOH HOH A .
C 3 HOH 4 304 204 HOH HOH A .
C 3 HOH 5 305 205 HOH HOH A .
C 3 HOH 6 306 206 HOH HOH A .
C 3 HOH 7 307 207 HOH HOH A .
C 3 HOH 8 308 208 HOH HOH A .
C 3 HOH 9 309 209 HOH HOH A .
C 3 HOH 10 310 210 HOH HOH A .
C 3 HOH 11 311 211 HOH HOH A .
C 3 HOH 12 312 212 HOH HOH A .
C 3 HOH 13 313 213 HOH HOH A .
C 3 HOH 14 314 214 HOH HOH A .
C 3 HOH 15 315 215 HOH HOH A .
C 3 HOH 16 316 216 HOH HOH A .
C 3 HOH 17 317 217 HOH HOH A .
C 3 HOH 18 318 218 HOH HOH A .
C 3 HOH 19 319 219 HOH HOH A .
C 3 HOH 20 320 220 HOH HOH A .
C 3 HOH 21 321 221 HOH HOH A .
C 3 HOH 22 322 222 HOH HOH A .
C 3 HOH 23 323 223 HOH HOH A .
C 3 HOH 24 324 224 HOH HOH A .
C 3 HOH 25 325 225 HOH HOH A .
C 3 HOH 26 326 226 HOH HOH A .
C 3 HOH 27 327 227 HOH HOH A .
C 3 HOH 28 328 228 HOH HOH A .
C 3 HOH 29 329 229 HOH HOH A .
C 3 HOH 30 330 230 HOH HOH A .
C 3 HOH 31 331 231 HOH HOH A .
C 3 HOH 32 332 232 HOH HOH A .
C 3 HOH 33 333 233 HOH HOH A .
C 3 HOH 34 334 234 HOH HOH A .
C 3 HOH 35 335 235 HOH HOH A .
C 3 HOH 36 336 236 HOH HOH A .
C 3 HOH 37 337 237 HOH HOH A .
C 3 HOH 38 338 238 HOH HOH A .
C 3 HOH 39 339 239 HOH HOH A .
C 3 HOH 40 340 240 HOH HOH A .
C 3 HOH 41 341 241 HOH HOH A .
C 3 HOH 42 342 242 HOH HOH A .
C 3 HOH 43 343 243 HOH HOH A .
C 3 HOH 44 344 244 HOH HOH A .
C 3 HOH 45 345 245 HOH HOH A .
C 3 HOH 46 346 246 HOH HOH A .
C 3 HOH 47 347 247 HOH HOH A .
C 3 HOH 48 348 248 HOH HOH A .
C 3 HOH 49 349 249 HOH HOH A .
C 3 HOH 50 350 250 HOH HOH A .
C 3 HOH 51 351 251 HOH HOH A .
C 3 HOH 52 352 252 HOH HOH A .
C 3 HOH 53 353 253 HOH HOH A .
C 3 HOH 54 354 254 HOH HOH A .
C 3 HOH 55 355 255 HOH HOH A .
C 3 HOH 56 356 256 HOH HOH A .
C 3 HOH 57 357 257 HOH HOH A .
C 3 HOH 58 358 258 HOH HOH A .
C 3 HOH 59 359 259 HOH HOH A .
C 3 HOH 60 360 260 HOH HOH A .
C 3 HOH 61 361 261 HOH HOH A .
C 3 HOH 62 362 262 HOH HOH A .
C 3 HOH 63 363 263 HOH HOH A .
C 3 HOH 64 364 264 HOH HOH A .
C 3 HOH 65 365 265 HOH HOH A .
C 3 HOH 66 366 266 HOH HOH A .
C 3 HOH 67 367 267 HOH HOH A .
C 3 HOH 68 368 268 HOH HOH A .
C 3 HOH 69 369 269 HOH HOH A .
C 3 HOH 70 370 270 HOH HOH A .
C 3 HOH 71 371 271 HOH HOH A .
C 3 HOH 72 372 272 HOH HOH A .
C 3 HOH 73 373 273 HOH HOH A .
C 3 HOH 74 374 274 HOH HOH A .
C 3 HOH 75 375 275 HOH HOH A .
C 3 HOH 76 376 276 HOH HOH A .
C 3 HOH 77 377 277 HOH HOH A .
C 3 HOH 78 378 278 HOH HOH A .
C 3 HOH 79 379 279 HOH HOH A .
C 3 HOH 80 380 280 HOH HOH A .
C 3 HOH 81 381 281 HOH HOH A .
C 3 HOH 82 382 282 HOH HOH A .
C 3 HOH 83 383 283 HOH HOH A .
C 3 HOH 84 384 284 HOH HOH A .
C 3 HOH 85 385 285 HOH HOH A .
C 3 HOH 86 386 286 HOH HOH A .
C 3 HOH 87 387 287 HOH HOH A .
C 3 HOH 88 388 288 HOH HOH A .
C 3 HOH 89 389 289 HOH HOH A .
C 3 HOH 90 390 290 HOH HOH A .
C 3 HOH 91 391 291 HOH HOH A .
C 3 HOH 92 392 292 HOH HOH A .
C 3 HOH 93 393 293 HOH HOH A .
C 3 HOH 94 394 294 HOH HOH A .
C 3 HOH 95 395 295 HOH HOH A .
C 3 HOH 96 396 296 HOH HOH A .
C 3 HOH 97 397 297 HOH HOH A .
C 3 HOH 98 398 298 HOH HOH A .
C 3 HOH 99 399 299 HOH HOH A .
C 3 HOH 100 400 300 HOH HOH A .
C 3 HOH 101 401 301 HOH HOH A .
C 3 HOH 102 402 302 HOH HOH A .
C 3 HOH 103 403 303 HOH HOH A .
C 3 HOH 104 404 304 HOH HOH A .
C 3 HOH 105 405 305 HOH HOH A .
C 3 HOH 106 406 306 HOH HOH A .
C 3 HOH 107 407 307 HOH HOH A .
C 3 HOH 108 408 308 HOH HOH A .
C 3 HOH 109 409 309 HOH HOH A .
C 3 HOH 110 410 310 HOH HOH A .
C 3 HOH 111 411 311 HOH HOH A .
C 3 HOH 112 412 312 HOH HOH A .
C 3 HOH 113 413 313 HOH HOH A .
C 3 HOH 114 414 314 HOH HOH A .
C 3 HOH 115 415 315 HOH HOH A .
C 3 HOH 116 416 316 HOH HOH A .
C 3 HOH 117 417 317 HOH HOH A .
C 3 HOH 118 418 318 HOH HOH A .
C 3 HOH 119 419 319 HOH HOH A .
C 3 HOH 120 420 320 HOH HOH A .
C 3 HOH 121 421 321 HOH HOH A .
C 3 HOH 122 422 322 HOH HOH A .
C 3 HOH 123 423 323 HOH HOH A .
C 3 HOH 124 424 324 HOH HOH A .
C 3 HOH 125 425 325 HOH HOH A .
C 3 HOH 126 426 326 HOH HOH A .
C 3 HOH 127 427 327 HOH HOH A .
C 3 HOH 128 428 328 HOH HOH A .
C 3 HOH 129 429 329 HOH HOH A .
C 3 HOH 130 430 330 HOH HOH A .
C 3 HOH 131 431 331 HOH HOH A .
C 3 HOH 132 432 332 HOH HOH A .
C 3 HOH 133 433 333 HOH HOH A .
C 3 HOH 134 434 334 HOH HOH A .
C 3 HOH 135 435 335 HOH HOH A .
C 3 HOH 136 436 336 HOH HOH A .
C 3 HOH 137 437 337 HOH HOH A .
C 3 HOH 138 438 338 HOH HOH A .
C 3 HOH 139 439 339 HOH HOH A .
C 3 HOH 140 440 340 HOH HOH A .
C 3 HOH 141 441 341 HOH HOH A .
C 3 HOH 142 442 342 HOH HOH A .
C 3 HOH 143 443 343 HOH HOH A .
C 3 HOH 144 444 344 HOH HOH A .
C 3 HOH 145 445 345 HOH HOH A .
C 3 HOH 146 446 346 HOH HOH A .
C 3 HOH 147 447 347 HOH HOH A .
C 3 HOH 148 448 348 HOH HOH A .
C 3 HOH 149 449 349 HOH HOH A .
C 3 HOH 150 450 350 HOH HOH A .
C 3 HOH 151 451 351 HOH HOH A .
C 3 HOH 152 452 352 HOH HOH A .
C 3 HOH 153 453 353 HOH HOH A .
C 3 HOH 154 454 354 HOH HOH A .
C 3 HOH 155 455 355 HOH HOH A .
C 3 HOH 156 456 356 HOH HOH A .
C 3 HOH 157 457 357 HOH HOH A .
C 3 HOH 158 458 358 HOH HOH A .
C 3 HOH 159 459 359 HOH HOH A .
C 3 HOH 160 460 360 HOH HOH A .
C 3 HOH 161 461 361 HOH HOH A .
C 3 HOH 162 462 362 HOH HOH A .
C 3 HOH 163 463 363 HOH HOH A .
C 3 HOH 164 464 364 HOH HOH A .
C 3 HOH 165 465 365 HOH HOH A .
C 3 HOH 166 466 366 HOH HOH A .
C 3 HOH 167 467 367 HOH HOH A .
C 3 HOH 168 468 368 HOH HOH A .
C 3 HOH 169 469 369 HOH HOH A .
C 3 HOH 170 470 370 HOH HOH A .
C 3 HOH 171 471 371 HOH HOH A .
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details monomeric
_pdbx_struct_assembly.oligomeric_count 1
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
loop_
_pdbx_struct_special_symmetry.id
_pdbx_struct_special_symmetry.PDB_model_num
_pdbx_struct_special_symmetry.auth_asym_id
_pdbx_struct_special_symmetry.auth_comp_id
_pdbx_struct_special_symmetry.auth_seq_id
_pdbx_struct_special_symmetry.PDB_ins_code
_pdbx_struct_special_symmetry.label_asym_id
_pdbx_struct_special_symmetry.label_comp_id
_pdbx_struct_special_symmetry.label_seq_id
1 1 A HOH 442 ? C HOH .
2 1 A HOH 470 ? C HOH .
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2012-07-11
2 'Structure model' 1 1 2012-07-25
3 'Structure model' 1 2 2023-08-30
4 'Structure model' 1 3 2023-09-13
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 3 'Structure model' 'Data collection'
3 3 'Structure model' 'Database references'
4 3 'Structure model' 'Derived calculations'
5 3 'Structure model' 'Structure summary'
6 4 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 3 'Structure model' audit_author
2 3 'Structure model' chem_comp_atom
3 3 'Structure model' chem_comp_bond
4 3 'Structure model' citation_author
5 3 'Structure model' database_2
6 3 'Structure model' struct_site
7 4 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 3 'Structure model' '_audit_author.identifier_ORCID'
2 3 'Structure model' '_citation_author.identifier_ORCID'
3 3 'Structure model' '_database_2.pdbx_DOI'
4 3 'Structure model' '_database_2.pdbx_database_accession'
5 3 'Structure model' '_struct_site.pdbx_auth_asym_id'
6 3 'Structure model' '_struct_site.pdbx_auth_comp_id'
7 3 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_phasing.method MR
#
loop_
_software.pdbx_ordinal
_software.name
_software.version
_software.date
_software.type
_software.contact_author
_software.contact_author_email
_software.classification
_software.location
_software.language
_software.citation_id
1 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling'
http://www.hkl-xray.com/ ? ?
2 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing
http://www-structmed.cimr.cam.ac.uk/phaser/ ? ?
3 PHENIX 1.7.2_869 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement
http://www.phenix-online.org/ C++ ?
4 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction'
http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ?
5 MAR345dtb . ? ? ? ? 'data collection' ? ? ?
6 HKL-2000 . ? ? ? ? 'data reduction' ? ? ?
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 ASP A 49 ? ? -95.48 42.85
2 1 VAL A 83 ? ? -81.40 33.91
3 1 LYS A 85 ? ? -54.15 2.89
4 1 LEU A 94 ? ? -167.98 117.42
5 1 ALA A 132 ? ? -151.44 62.78
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
ARG N N N N 14
ARG CA C N S 15
ARG C C N N 16
ARG O O N N 17
ARG CB C N N 18
ARG CG C N N 19
ARG CD C N N 20
ARG NE N N N 21
ARG CZ C N N 22
ARG NH1 N N N 23
ARG NH2 N N N 24
ARG OXT O N N 25
ARG H H N N 26
ARG H2 H N N 27
ARG HA H N N 28
ARG HB2 H N N 29
ARG HB3 H N N 30
ARG HG2 H N N 31
ARG HG3 H N N 32
ARG HD2 H N N 33
ARG HD3 H N N 34
ARG HE H N N 35
ARG HH11 H N N 36
ARG HH12 H N N 37
ARG HH21 H N N 38
ARG HH22 H N N 39
ARG HXT H N N 40
ASN N N N N 41
ASN CA C N S 42
ASN C C N N 43
ASN O O N N 44
ASN CB C N N 45
ASN CG C N N 46
ASN OD1 O N N 47
ASN ND2 N N N 48
ASN OXT O N N 49
ASN H H N N 50
ASN H2 H N N 51
ASN HA H N N 52
ASN HB2 H N N 53
ASN HB3 H N N 54
ASN HD21 H N N 55
ASN HD22 H N N 56
ASN HXT H N N 57
ASP N N N N 58
ASP CA C N S 59
ASP C C N N 60
ASP O O N N 61
ASP CB C N N 62
ASP CG C N N 63
ASP OD1 O N N 64
ASP OD2 O N N 65
ASP OXT O N N 66
ASP H H N N 67
ASP H2 H N N 68
ASP HA H N N 69
ASP HB2 H N N 70
ASP HB3 H N N 71
ASP HD2 H N N 72
ASP HXT H N N 73
GLN N N N N 74
GLN CA C N S 75
GLN C C N N 76
GLN O O N N 77
GLN CB C N N 78
GLN CG C N N 79
GLN CD C N N 80
GLN OE1 O N N 81
GLN NE2 N N N 82
GLN OXT O N N 83
GLN H H N N 84
GLN H2 H N N 85
GLN HA H N N 86
GLN HB2 H N N 87
GLN HB3 H N N 88
GLN HG2 H N N 89
GLN HG3 H N N 90
GLN HE21 H N N 91
GLN HE22 H N N 92
GLN HXT H N N 93
GLU N N N N 94
GLU CA C N S 95
GLU C C N N 96
GLU O O N N 97
GLU CB C N N 98
GLU CG C N N 99
GLU CD C N N 100
GLU OE1 O N N 101
GLU OE2 O N N 102
GLU OXT O N N 103
GLU H H N N 104
GLU H2 H N N 105
GLU HA H N N 106
GLU HB2 H N N 107
GLU HB3 H N N 108
GLU HG2 H N N 109
GLU HG3 H N N 110
GLU HE2 H N N 111
GLU HXT H N N 112
GLY N N N N 113
GLY CA C N N 114
GLY C C N N 115
GLY O O N N 116
GLY OXT O N N 117
GLY H H N N 118
GLY H2 H N N 119
GLY HA2 H N N 120
GLY HA3 H N N 121
GLY HXT H N N 122
HIS N N N N 123
HIS CA C N S 124
HIS C C N N 125
HIS O O N N 126
HIS CB C N N 127
HIS CG C Y N 128
HIS ND1 N Y N 129
HIS CD2 C Y N 130
HIS CE1 C Y N 131
HIS NE2 N Y N 132
HIS OXT O N N 133
HIS H H N N 134
HIS H2 H N N 135
HIS HA H N N 136
HIS HB2 H N N 137
HIS HB3 H N N 138
HIS HD1 H N N 139
HIS HD2 H N N 140
HIS HE1 H N N 141
HIS HE2 H N N 142
HIS HXT H N N 143
HOH O O N N 144
HOH H1 H N N 145
HOH H2 H N N 146
ILE N N N N 147
ILE CA C N S 148
ILE C C N N 149
ILE O O N N 150
ILE CB C N S 151
ILE CG1 C N N 152
ILE CG2 C N N 153
ILE CD1 C N N 154
ILE OXT O N N 155
ILE H H N N 156
ILE H2 H N N 157
ILE HA H N N 158
ILE HB H N N 159
ILE HG12 H N N 160
ILE HG13 H N N 161
ILE HG21 H N N 162
ILE HG22 H N N 163
ILE HG23 H N N 164
ILE HD11 H N N 165
ILE HD12 H N N 166
ILE HD13 H N N 167
ILE HXT H N N 168
J1D C1 C N S 169
J1D O1 O N N 170
J1D C2 C N S 171
J1D O2 O N N 172
J1D C3 C N R 173
J1D O3 O N N 174
J1D C4 C N R 175
J1D N1 N Y N 176
J1D C5 C Y N 177
J1D N2 N Y N 178
J1D C6 C Y N 179
J1D C7 C Y N 180
J1D N3 N N N 181
J1D N4 N Y N 182
J1D C8 C Y N 183
J1D N5 N Y N 184
J1D C9 C Y N 185
J1D C10 C N N 186
J1D S1 S N N 187
J1D C11 C N N 188
J1D N6 N N N 189
J1D C12 C N N 190
J1D C13 C N N 191
J1D C14 C N N 192
J1D N7 N N N 193
J1D C15 C N N 194
J1D O4 O N N 195
J1D N8 N N N 196
J1D C16 C N N 197
J1D N9 N N N 198
J1D N10 N N N 199
J1D C17 C N N 200
J1D O5 O N N 201
J1D N11 N N N 202
J1D C18 C N N 203
J1D C19 C N N 204
J1D C20 C N N 205
J1D C21 C N N 206
J1D N12 N N N 207
J1D C22 C N N 208
J1D C23 C N N 209
J1D O6 O N N 210
J1D O7 O N N 211
J1D O8 O N N 212
J1D H1 H N N 213
J1D H2 H N N 214
J1D H3 H N N 215
J1D H4 H N N 216
J1D H5 H N N 217
J1D H6 H N N 218
J1D H7 H N N 219
J1D H8 H N N 220
J1D H9 H N N 221
J1D H10 H N N 222
J1D H11 H N N 223
J1D H12 H N N 224
J1D H13 H N N 225
J1D H14 H N N 226
J1D H15 H N N 227
J1D H16 H N N 228
J1D H17 H N N 229
J1D H18 H N N 230
J1D H19 H N N 231
J1D H20 H N N 232
J1D H21 H N N 233
J1D H22 H N N 234
J1D H23 H N N 235
J1D H24 H N N 236
J1D H25 H N N 237
J1D H26 H N N 238
J1D H27 H N N 239
J1D H28 H N N 240
J1D H29 H N N 241
J1D H31 H N N 242
LEU N N N N 243
LEU CA C N S 244
LEU C C N N 245
LEU O O N N 246
LEU CB C N N 247
LEU CG C N N 248
LEU CD1 C N N 249
LEU CD2 C N N 250
LEU OXT O N N 251
LEU H H N N 252
LEU H2 H N N 253
LEU HA H N N 254
LEU HB2 H N N 255
LEU HB3 H N N 256
LEU HG H N N 257
LEU HD11 H N N 258
LEU HD12 H N N 259
LEU HD13 H N N 260
LEU HD21 H N N 261
LEU HD22 H N N 262
LEU HD23 H N N 263
LEU HXT H N N 264
LYS N N N N 265
LYS CA C N S 266
LYS C C N N 267
LYS O O N N 268
LYS CB C N N 269
LYS CG C N N 270
LYS CD C N N 271
LYS CE C N N 272
LYS NZ N N N 273
LYS OXT O N N 274
LYS H H N N 275
LYS H2 H N N 276
LYS HA H N N 277
LYS HB2 H N N 278
LYS HB3 H N N 279
LYS HG2 H N N 280
LYS HG3 H N N 281
LYS HD2 H N N 282
LYS HD3 H N N 283
LYS HE2 H N N 284
LYS HE3 H N N 285
LYS HZ1 H N N 286
LYS HZ2 H N N 287
LYS HZ3 H N N 288
LYS HXT H N N 289
MET N N N N 290
MET CA C N S 291
MET C C N N 292
MET O O N N 293
MET CB C N N 294
MET CG C N N 295
MET SD S N N 296
MET CE C N N 297
MET OXT O N N 298
MET H H N N 299
MET H2 H N N 300
MET HA H N N 301
MET HB2 H N N 302
MET HB3 H N N 303
MET HG2 H N N 304
MET HG3 H N N 305
MET HE1 H N N 306
MET HE2 H N N 307
MET HE3 H N N 308
MET HXT H N N 309
PHE N N N N 310
PHE CA C N S 311
PHE C C N N 312
PHE O O N N 313
PHE CB C N N 314
PHE CG C Y N 315
PHE CD1 C Y N 316
PHE CD2 C Y N 317
PHE CE1 C Y N 318
PHE CE2 C Y N 319
PHE CZ C Y N 320
PHE OXT O N N 321
PHE H H N N 322
PHE H2 H N N 323
PHE HA H N N 324
PHE HB2 H N N 325
PHE HB3 H N N 326
PHE HD1 H N N 327
PHE HD2 H N N 328
PHE HE1 H N N 329
PHE HE2 H N N 330
PHE HZ H N N 331
PHE HXT H N N 332
PRO N N N N 333
PRO CA C N S 334
PRO C C N N 335
PRO O O N N 336
PRO CB C N N 337
PRO CG C N N 338
PRO CD C N N 339
PRO OXT O N N 340
PRO H H N N 341
PRO HA H N N 342
PRO HB2 H N N 343
PRO HB3 H N N 344
PRO HG2 H N N 345
PRO HG3 H N N 346
PRO HD2 H N N 347
PRO HD3 H N N 348
PRO HXT H N N 349
SER N N N N 350
SER CA C N S 351
SER C C N N 352
SER O O N N 353
SER CB C N N 354
SER OG O N N 355
SER OXT O N N 356
SER H H N N 357
SER H2 H N N 358
SER HA H N N 359
SER HB2 H N N 360
SER HB3 H N N 361
SER HG H N N 362
SER HXT H N N 363
THR N N N N 364
THR CA C N S 365
THR C C N N 366
THR O O N N 367
THR CB C N R 368
THR OG1 O N N 369
THR CG2 C N N 370
THR OXT O N N 371
THR H H N N 372
THR H2 H N N 373
THR HA H N N 374
THR HB H N N 375
THR HG1 H N N 376
THR HG21 H N N 377
THR HG22 H N N 378
THR HG23 H N N 379
THR HXT H N N 380
TRP N N N N 381
TRP CA C N S 382
TRP C C N N 383
TRP O O N N 384
TRP CB C N N 385
TRP CG C Y N 386
TRP CD1 C Y N 387
TRP CD2 C Y N 388
TRP NE1 N Y N 389
TRP CE2 C Y N 390
TRP CE3 C Y N 391
TRP CZ2 C Y N 392
TRP CZ3 C Y N 393
TRP CH2 C Y N 394
TRP OXT O N N 395
TRP H H N N 396
TRP H2 H N N 397
TRP HA H N N 398
TRP HB2 H N N 399
TRP HB3 H N N 400
TRP HD1 H N N 401
TRP HE1 H N N 402
TRP HE3 H N N 403
TRP HZ2 H N N 404
TRP HZ3 H N N 405
TRP HH2 H N N 406
TRP HXT H N N 407
TYR N N N N 408
TYR CA C N S 409
TYR C C N N 410
TYR O O N N 411
TYR CB C N N 412
TYR CG C Y N 413
TYR CD1 C Y N 414
TYR CD2 C Y N 415
TYR CE1 C Y N 416
TYR CE2 C Y N 417
TYR CZ C Y N 418
TYR OH O N N 419
TYR OXT O N N 420
TYR H H N N 421
TYR H2 H N N 422
TYR HA H N N 423
TYR HB2 H N N 424
TYR HB3 H N N 425
TYR HD1 H N N 426
TYR HD2 H N N 427
TYR HE1 H N N 428
TYR HE2 H N N 429
TYR HH H N N 430
TYR HXT H N N 431
VAL N N N N 432
VAL CA C N S 433
VAL C C N N 434
VAL O O N N 435
VAL CB C N N 436
VAL CG1 C N N 437
VAL CG2 C N N 438
VAL OXT O N N 439
VAL H H N N 440
VAL H2 H N N 441
VAL HA H N N 442
VAL HB H N N 443
VAL HG11 H N N 444
VAL HG12 H N N 445
VAL HG13 H N N 446
VAL HG21 H N N 447
VAL HG22 H N N 448
VAL HG23 H N N 449
VAL HXT H N N 450
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
ARG N CA sing N N 13
ARG N H sing N N 14
ARG N H2 sing N N 15
ARG CA C sing N N 16
ARG CA CB sing N N 17
ARG CA HA sing N N 18
ARG C O doub N N 19
ARG C OXT sing N N 20
ARG CB CG sing N N 21
ARG CB HB2 sing N N 22
ARG CB HB3 sing N N 23
ARG CG CD sing N N 24
ARG CG HG2 sing N N 25
ARG CG HG3 sing N N 26
ARG CD NE sing N N 27
ARG CD HD2 sing N N 28
ARG CD HD3 sing N N 29
ARG NE CZ sing N N 30
ARG NE HE sing N N 31
ARG CZ NH1 sing N N 32
ARG CZ NH2 doub N N 33
ARG NH1 HH11 sing N N 34
ARG NH1 HH12 sing N N 35
ARG NH2 HH21 sing N N 36
ARG NH2 HH22 sing N N 37
ARG OXT HXT sing N N 38
ASN N CA sing N N 39
ASN N H sing N N 40
ASN N H2 sing N N 41
ASN CA C sing N N 42
ASN CA CB sing N N 43
ASN CA HA sing N N 44
ASN C O doub N N 45
ASN C OXT sing N N 46
ASN CB CG sing N N 47
ASN CB HB2 sing N N 48
ASN CB HB3 sing N N 49
ASN CG OD1 doub N N 50
ASN CG ND2 sing N N 51
ASN ND2 HD21 sing N N 52
ASN ND2 HD22 sing N N 53
ASN OXT HXT sing N N 54
ASP N CA sing N N 55
ASP N H sing N N 56
ASP N H2 sing N N 57
ASP CA C sing N N 58
ASP CA CB sing N N 59
ASP CA HA sing N N 60
ASP C O doub N N 61
ASP C OXT sing N N 62
ASP CB CG sing N N 63
ASP CB HB2 sing N N 64
ASP CB HB3 sing N N 65
ASP CG OD1 doub N N 66
ASP CG OD2 sing N N 67
ASP OD2 HD2 sing N N 68
ASP OXT HXT sing N N 69
GLN N CA sing N N 70
GLN N H sing N N 71
GLN N H2 sing N N 72
GLN CA C sing N N 73
GLN CA CB sing N N 74
GLN CA HA sing N N 75
GLN C O doub N N 76
GLN C OXT sing N N 77
GLN CB CG sing N N 78
GLN CB HB2 sing N N 79
GLN CB HB3 sing N N 80
GLN CG CD sing N N 81
GLN CG HG2 sing N N 82
GLN CG HG3 sing N N 83
GLN CD OE1 doub N N 84
GLN CD NE2 sing N N 85
GLN NE2 HE21 sing N N 86
GLN NE2 HE22 sing N N 87
GLN OXT HXT sing N N 88
GLU N CA sing N N 89
GLU N H sing N N 90
GLU N H2 sing N N 91
GLU CA C sing N N 92
GLU CA CB sing N N 93
GLU CA HA sing N N 94
GLU C O doub N N 95
GLU C OXT sing N N 96
GLU CB CG sing N N 97
GLU CB HB2 sing N N 98
GLU CB HB3 sing N N 99
GLU CG CD sing N N 100
GLU CG HG2 sing N N 101
GLU CG HG3 sing N N 102
GLU CD OE1 doub N N 103
GLU CD OE2 sing N N 104
GLU OE2 HE2 sing N N 105
GLU OXT HXT sing N N 106
GLY N CA sing N N 107
GLY N H sing N N 108
GLY N H2 sing N N 109
GLY CA C sing N N 110
GLY CA HA2 sing N N 111
GLY CA HA3 sing N N 112
GLY C O doub N N 113
GLY C OXT sing N N 114
GLY OXT HXT sing N N 115
HIS N CA sing N N 116
HIS N H sing N N 117
HIS N H2 sing N N 118
HIS CA C sing N N 119
HIS CA CB sing N N 120
HIS CA HA sing N N 121
HIS C O doub N N 122
HIS C OXT sing N N 123
HIS CB CG sing N N 124
HIS CB HB2 sing N N 125
HIS CB HB3 sing N N 126
HIS CG ND1 sing Y N 127
HIS CG CD2 doub Y N 128
HIS ND1 CE1 doub Y N 129
HIS ND1 HD1 sing N N 130
HIS CD2 NE2 sing Y N 131
HIS CD2 HD2 sing N N 132
HIS CE1 NE2 sing Y N 133
HIS CE1 HE1 sing N N 134
HIS NE2 HE2 sing N N 135
HIS OXT HXT sing N N 136
HOH O H1 sing N N 137
HOH O H2 sing N N 138
ILE N CA sing N N 139
ILE N H sing N N 140
ILE N H2 sing N N 141
ILE CA C sing N N 142
ILE CA CB sing N N 143
ILE CA HA sing N N 144
ILE C O doub N N 145
ILE C OXT sing N N 146
ILE CB CG1 sing N N 147
ILE CB CG2 sing N N 148
ILE CB HB sing N N 149
ILE CG1 CD1 sing N N 150
ILE CG1 HG12 sing N N 151
ILE CG1 HG13 sing N N 152
ILE CG2 HG21 sing N N 153
ILE CG2 HG22 sing N N 154
ILE CG2 HG23 sing N N 155
ILE CD1 HD11 sing N N 156
ILE CD1 HD12 sing N N 157
ILE CD1 HD13 sing N N 158
ILE OXT HXT sing N N 159
J1D N9 C16 sing N N 160
J1D C16 N10 sing N N 161
J1D C16 N8 doub N N 162
J1D N10 C17 sing N N 163
J1D N8 C22 sing N N 164
J1D C17 O5 doub N N 165
J1D C17 C23 sing N N 166
J1D C22 N12 sing N N 167
J1D C22 C23 doub N N 168
J1D N12 C19 sing N N 169
J1D C23 N11 sing N N 170
J1D C21 C19 sing N N 171
J1D N11 C18 doub N N 172
J1D C19 C18 sing N N 173
J1D C19 C20 sing N N 174
J1D C18 C15 sing N N 175
J1D O6 C13 doub N N 176
J1D C15 N7 sing N N 177
J1D C15 O4 doub N N 178
J1D N7 C14 sing N N 179
J1D N3 C7 sing N N 180
J1D C13 C14 sing N N 181
J1D C13 N6 sing N N 182
J1D C7 N4 doub Y N 183
J1D C7 C6 sing Y N 184
J1D N4 C8 sing Y N 185
J1D N2 C6 sing Y N 186
J1D N2 C5 doub Y N 187
J1D C11 C12 sing N N 188
J1D C11 S1 sing N N 189
J1D C6 C9 doub Y N 190
J1D N6 C12 sing N N 191
J1D C8 N5 doub Y N 192
J1D C5 N1 sing Y N 193
J1D O7 S1 doub N N 194
J1D C10 S1 sing N N 195
J1D C10 C1 sing N N 196
J1D C9 N5 sing Y N 197
J1D C9 N1 sing Y N 198
J1D S1 O8 doub N N 199
J1D N1 C4 sing N N 200
J1D C2 C1 sing N N 201
J1D C2 O2 sing N N 202
J1D C2 C3 sing N N 203
J1D C1 O1 sing N N 204
J1D O1 C4 sing N N 205
J1D C4 C3 sing N N 206
J1D C3 O3 sing N N 207
J1D C1 H1 sing N N 208
J1D C2 H2 sing N N 209
J1D O2 H3 sing N N 210
J1D C3 H4 sing N N 211
J1D O3 H5 sing N N 212
J1D C4 H6 sing N N 213
J1D C5 H7 sing N N 214
J1D N3 H8 sing N N 215
J1D N3 H9 sing N N 216
J1D C8 H10 sing N N 217
J1D C10 H11 sing N N 218
J1D C10 H12 sing N N 219
J1D C11 H13 sing N N 220
J1D C11 H14 sing N N 221
J1D N6 H15 sing N N 222
J1D C12 H16 sing N N 223
J1D C12 H17 sing N N 224
J1D C14 H18 sing N N 225
J1D C14 H19 sing N N 226
J1D N7 H20 sing N N 227
J1D N9 H21 sing N N 228
J1D N9 H22 sing N N 229
J1D N10 H23 sing N N 230
J1D C20 H24 sing N N 231
J1D C20 H25 sing N N 232
J1D C20 H26 sing N N 233
J1D C21 H27 sing N N 234
J1D C21 H28 sing N N 235
J1D C21 H29 sing N N 236
J1D N12 H31 sing N N 237
LEU N CA sing N N 238
LEU N H sing N N 239
LEU N H2 sing N N 240
LEU CA C sing N N 241
LEU CA CB sing N N 242
LEU CA HA sing N N 243
LEU C O doub N N 244
LEU C OXT sing N N 245
LEU CB CG sing N N 246
LEU CB HB2 sing N N 247
LEU CB HB3 sing N N 248
LEU CG CD1 sing N N 249
LEU CG CD2 sing N N 250
LEU CG HG sing N N 251
LEU CD1 HD11 sing N N 252
LEU CD1 HD12 sing N N 253
LEU CD1 HD13 sing N N 254
LEU CD2 HD21 sing N N 255
LEU CD2 HD22 sing N N 256
LEU CD2 HD23 sing N N 257
LEU OXT HXT sing N N 258
LYS N CA sing N N 259
LYS N H sing N N 260
LYS N H2 sing N N 261
LYS CA C sing N N 262
LYS CA CB sing N N 263
LYS CA HA sing N N 264
LYS C O doub N N 265
LYS C OXT sing N N 266
LYS CB CG sing N N 267
LYS CB HB2 sing N N 268
LYS CB HB3 sing N N 269
LYS CG CD sing N N 270
LYS CG HG2 sing N N 271
LYS CG HG3 sing N N 272
LYS CD CE sing N N 273
LYS CD HD2 sing N N 274
LYS CD HD3 sing N N 275
LYS CE NZ sing N N 276
LYS CE HE2 sing N N 277
LYS CE HE3 sing N N 278
LYS NZ HZ1 sing N N 279
LYS NZ HZ2 sing N N 280
LYS NZ HZ3 sing N N 281
LYS OXT HXT sing N N 282
MET N CA sing N N 283
MET N H sing N N 284
MET N H2 sing N N 285
MET CA C sing N N 286
MET CA CB sing N N 287
MET CA HA sing N N 288
MET C O doub N N 289
MET C OXT sing N N 290
MET CB CG sing N N 291
MET CB HB2 sing N N 292
MET CB HB3 sing N N 293
MET CG SD sing N N 294
MET CG HG2 sing N N 295
MET CG HG3 sing N N 296
MET SD CE sing N N 297
MET CE HE1 sing N N 298
MET CE HE2 sing N N 299
MET CE HE3 sing N N 300
MET OXT HXT sing N N 301
PHE N CA sing N N 302
PHE N H sing N N 303
PHE N H2 sing N N 304
PHE CA C sing N N 305
PHE CA CB sing N N 306
PHE CA HA sing N N 307
PHE C O doub N N 308
PHE C OXT sing N N 309
PHE CB CG sing N N 310
PHE CB HB2 sing N N 311
PHE CB HB3 sing N N 312
PHE CG CD1 doub Y N 313
PHE CG CD2 sing Y N 314
PHE CD1 CE1 sing Y N 315
PHE CD1 HD1 sing N N 316
PHE CD2 CE2 doub Y N 317
PHE CD2 HD2 sing N N 318
PHE CE1 CZ doub Y N 319
PHE CE1 HE1 sing N N 320
PHE CE2 CZ sing Y N 321
PHE CE2 HE2 sing N N 322
PHE CZ HZ sing N N 323
PHE OXT HXT sing N N 324
PRO N CA sing N N 325
PRO N CD sing N N 326
PRO N H sing N N 327
PRO CA C sing N N 328
PRO CA CB sing N N 329
PRO CA HA sing N N 330
PRO C O doub N N 331
PRO C OXT sing N N 332
PRO CB CG sing N N 333
PRO CB HB2 sing N N 334
PRO CB HB3 sing N N 335
PRO CG CD sing N N 336
PRO CG HG2 sing N N 337
PRO CG HG3 sing N N 338
PRO CD HD2 sing N N 339
PRO CD HD3 sing N N 340
PRO OXT HXT sing N N 341
SER N CA sing N N 342
SER N H sing N N 343
SER N H2 sing N N 344
SER CA C sing N N 345
SER CA CB sing N N 346
SER CA HA sing N N 347
SER C O doub N N 348
SER C OXT sing N N 349
SER CB OG sing N N 350
SER CB HB2 sing N N 351
SER CB HB3 sing N N 352
SER OG HG sing N N 353
SER OXT HXT sing N N 354
THR N CA sing N N 355
THR N H sing N N 356
THR N H2 sing N N 357
THR CA C sing N N 358
THR CA CB sing N N 359
THR CA HA sing N N 360
THR C O doub N N 361
THR C OXT sing N N 362
THR CB OG1 sing N N 363
THR CB CG2 sing N N 364
THR CB HB sing N N 365
THR OG1 HG1 sing N N 366
THR CG2 HG21 sing N N 367
THR CG2 HG22 sing N N 368
THR CG2 HG23 sing N N 369
THR OXT HXT sing N N 370
TRP N CA sing N N 371
TRP N H sing N N 372
TRP N H2 sing N N 373
TRP CA C sing N N 374
TRP CA CB sing N N 375
TRP CA HA sing N N 376
TRP C O doub N N 377
TRP C OXT sing N N 378
TRP CB CG sing N N 379
TRP CB HB2 sing N N 380
TRP CB HB3 sing N N 381
TRP CG CD1 doub Y N 382
TRP CG CD2 sing Y N 383
TRP CD1 NE1 sing Y N 384
TRP CD1 HD1 sing N N 385
TRP CD2 CE2 doub Y N 386
TRP CD2 CE3 sing Y N 387
TRP NE1 CE2 sing Y N 388
TRP NE1 HE1 sing N N 389
TRP CE2 CZ2 sing Y N 390
TRP CE3 CZ3 doub Y N 391
TRP CE3 HE3 sing N N 392
TRP CZ2 CH2 doub Y N 393
TRP CZ2 HZ2 sing N N 394
TRP CZ3 CH2 sing Y N 395
TRP CZ3 HZ3 sing N N 396
TRP CH2 HH2 sing N N 397
TRP OXT HXT sing N N 398
TYR N CA sing N N 399
TYR N H sing N N 400
TYR N H2 sing N N 401
TYR CA C sing N N 402
TYR CA CB sing N N 403
TYR CA HA sing N N 404
TYR C O doub N N 405
TYR C OXT sing N N 406
TYR CB CG sing N N 407
TYR CB HB2 sing N N 408
TYR CB HB3 sing N N 409
TYR CG CD1 doub Y N 410
TYR CG CD2 sing Y N 411
TYR CD1 CE1 sing Y N 412
TYR CD1 HD1 sing N N 413
TYR CD2 CE2 doub Y N 414
TYR CD2 HD2 sing N N 415
TYR CE1 CZ doub Y N 416
TYR CE1 HE1 sing N N 417
TYR CE2 CZ sing Y N 418
TYR CE2 HE2 sing N N 419
TYR CZ OH sing N N 420
TYR OH HH sing N N 421
TYR OXT HXT sing N N 422
VAL N CA sing N N 423
VAL N H sing N N 424
VAL N H2 sing N N 425
VAL CA C sing N N 426
VAL CA CB sing N N 427
VAL CA HA sing N N 428
VAL C O doub N N 429
VAL C OXT sing N N 430
VAL CB CG1 sing N N 431
VAL CB CG2 sing N N 432
VAL CB HB sing N N 433
VAL CG1 HG11 sing N N 434
VAL CG1 HG12 sing N N 435
VAL CG1 HG13 sing N N 436
VAL CG2 HG21 sing N N 437
VAL CG2 HG22 sing N N 438
VAL CG2 HG23 sing N N 439
VAL OXT HXT sing N N 440
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2
"5'-{[2-({N-[(2-amino-7,7-dimethyl-4-oxo-3,4,7,8-tetrahydropteridin-6-yl)carbonyl]glycyl}amino)ethyl]sulfonyl}-5'-deoxyadenosine"
J1D
3 water HOH
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 3UDV
_pdbx_initial_refinement_model.details 'PDB entry 3UDV'
#