data_4F8K # _entry.id 4F8K # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.283 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4F8K RCSB RCSB072590 WWPDB D_1000072590 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3NGH _pdbx_database_related.details 'Molecular analysis of the interaction of SR-BI with the first PDZ domain of PDZK1.' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4F8K _pdbx_database_status.recvd_initial_deposition_date 2012-05-17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kocher, O.' 1 'Birrane, G.' 2 'Kinsella, B.T.' 3 'Mulvaney, E.P.' 4 # _citation.id primary _citation.title ;Molecular Analysis of the Prostacyclin Receptor's Interaction with the PDZ1 Domain of Its Adaptor Protein PDZK1. ; _citation.journal_abbrev 'Plos One' _citation.journal_volume 8 _citation.page_first e53819 _citation.page_last e53819 _citation.year 2013 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1932-6203 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23457445 _citation.pdbx_database_id_DOI 10.1371/journal.pone.0053819 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Birrane, G.' 1 primary 'Mulvaney, E.P.' 2 primary 'Pal, R.' 3 primary 'Kinsella, B.T.' 4 primary 'Kocher, O.' 5 # _cell.entry_id 4F8K _cell.length_a 39.271 _cell.length_b 68.477 _cell.length_c 40.124 _cell.angle_alpha 90.00 _cell.angle_beta 91.75 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4F8K _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Na(+)/H(+) exchange regulatory cofactor NHE-RF3, Prostacyclin receptor' 12016.534 2 ? C10S 'PDZ1, UNP residues 7-106, Prostacyclin receptor C-terminus, 409-415' ? 2 water nat water 18.015 132 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;NHERF-3, CFTR-associated protein of 70 kDa, Na(+)/H(+) exchanger regulatory factor 3, Na/Pi cotransporter C-terminal-associated protein 1, NaPi-Cap1, PDZ domain-containing protein 1, Sodium-hydrogen exchanger regulatory factor 3, Prostaglandin I2 receptor, PGI receptor, PGI2 receptor, Prostanoid IP receptor ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSPRESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTL LVLDGDSYEKAVKNQVDLKELDIAACSLC ; _entity_poly.pdbx_seq_one_letter_code_can ;GSPRESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTL LVLDGDSYEKAVKNQVDLKELDIAACSLC ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 PRO n 1 4 ARG n 1 5 GLU n 1 6 SER n 1 7 LYS n 1 8 LEU n 1 9 SER n 1 10 LYS n 1 11 GLN n 1 12 GLU n 1 13 GLY n 1 14 GLN n 1 15 ASN n 1 16 TYR n 1 17 GLY n 1 18 PHE n 1 19 PHE n 1 20 LEU n 1 21 ARG n 1 22 ILE n 1 23 GLU n 1 24 LYS n 1 25 ASP n 1 26 THR n 1 27 ASP n 1 28 GLY n 1 29 HIS n 1 30 LEU n 1 31 ILE n 1 32 ARG n 1 33 VAL n 1 34 ILE n 1 35 GLU n 1 36 GLU n 1 37 GLY n 1 38 SER n 1 39 PRO n 1 40 ALA n 1 41 GLU n 1 42 LYS n 1 43 ALA n 1 44 GLY n 1 45 LEU n 1 46 LEU n 1 47 ASP n 1 48 GLY n 1 49 ASP n 1 50 ARG n 1 51 VAL n 1 52 LEU n 1 53 ARG n 1 54 ILE n 1 55 ASN n 1 56 GLY n 1 57 VAL n 1 58 PHE n 1 59 VAL n 1 60 ASP n 1 61 LYS n 1 62 GLU n 1 63 GLU n 1 64 HIS n 1 65 ALA n 1 66 GLN n 1 67 VAL n 1 68 VAL n 1 69 GLU n 1 70 LEU n 1 71 VAL n 1 72 ARG n 1 73 LYS n 1 74 SER n 1 75 GLY n 1 76 ASN n 1 77 SER n 1 78 VAL n 1 79 THR n 1 80 LEU n 1 81 LEU n 1 82 VAL n 1 83 LEU n 1 84 ASP n 1 85 GLY n 1 86 ASP n 1 87 SER n 1 88 TYR n 1 89 GLU n 1 90 LYS n 1 91 ALA n 1 92 VAL n 1 93 LYS n 1 94 ASN n 1 95 GLN n 1 96 VAL n 1 97 ASP n 1 98 LEU n 1 99 LYS n 1 100 GLU n 1 101 LEU n 1 102 ASP n 1 103 ILE n 1 104 ALA n 1 105 ALA n 1 106 CYS n 1 107 SER n 1 108 LEU n 1 109 CYS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? 3 102 mouse ? 'Cap70, Nherf3, Pdzk1, Prostacyclin receptor, Ptgir' ? ? ? ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? JM109 ? ? ? ? ? ? ? Plasmid ? ? ? pGEX-4T-3 ? ? 1 2 sample ? 103 109 mouse ? 'Cap70, Nherf3, Pdzk1, Prostacyclin receptor, Ptgir' ? ? ? ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? JM109 ? ? ? ? ? ? ? Plasmid ? ? ? pGEX-4T-3 ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP NHRF3_MOUSE Q9JIL4 1 ;PRECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLV LDGDSYEKAVKNQVDLKELD ; 7 ? 2 UNP PI2R_MOUSE P43252 1 IAACSLC 409 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4F8K A 3 ? 102 ? Q9JIL4 7 ? 106 ? 7 106 2 2 4F8K A 103 ? 109 ? P43252 409 ? 415 ? 107 113 3 1 4F8K B 3 ? 102 ? Q9JIL4 7 ? 106 ? 7 106 4 2 4F8K B 103 ? 109 ? P43252 409 ? 415 ? 107 113 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4F8K GLY A 1 ? UNP Q9JIL4 ? ? 'EXPRESSION TAG' 5 1 1 4F8K SER A 2 ? UNP Q9JIL4 ? ? 'EXPRESSION TAG' 6 2 1 4F8K SER A 6 ? UNP Q9JIL4 CYS 10 'ENGINEERED MUTATION' 10 3 3 4F8K GLY B 1 ? UNP Q9JIL4 ? ? 'EXPRESSION TAG' 5 4 3 4F8K SER B 2 ? UNP Q9JIL4 ? ? 'EXPRESSION TAG' 6 5 3 4F8K SER B 6 ? UNP Q9JIL4 CYS 10 'ENGINEERED MUTATION' 10 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4F8K _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.24 _exptl_crystal.density_percent_sol 45.18 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '0.1M MES pH6.5, 30% (w/v) PEG 300, VAPOR DIFFUSION, SITTING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2012-02-03 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111) channel' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.075 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.075 # _reflns.entry_id 4F8K _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 40.1 _reflns.d_resolution_high 1.70 _reflns.number_obs 23390 _reflns.number_all 23390 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 4F8K _refine.ls_number_reflns_obs 22171 _refine.ls_number_reflns_all 22171 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.1 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 99.79 _refine.ls_R_factor_obs 0.18611 _refine.ls_R_factor_all 0.18611 _refine.ls_R_factor_R_work 0.18429 _refine.ls_R_factor_R_free 0.21914 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1200 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.960 _refine.correlation_coeff_Fo_to_Fc_free 0.943 _refine.B_iso_mean 19.253 _refine.aniso_B[1][1] 0.58 _refine.aniso_B[2][2] -0.38 _refine.aniso_B[3][3] -0.21 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.10 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 3NGH _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.115 _refine.pdbx_overall_ESU_R_Free 0.111 _refine.overall_SU_ML 0.071 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.118 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1686 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 132 _refine_hist.number_atoms_total 1818 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 40.1 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.013 0.019 ? 1786 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.003 0.020 ? 1233 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.591 1.989 ? 2424 ? 'X-RAY DIFFRACTION' r_angle_other_deg 0.891 3.000 ? 3046 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6.195 5.000 ? 243 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 43.414 25.517 ? 87 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 14.306 15.000 ? 346 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 22.981 15.000 ? 12 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.093 0.200 ? 279 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.007 0.020 ? 2034 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.001 0.020 ? 334 ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.700 _refine_ls_shell.d_res_low 1.744 _refine_ls_shell.number_reflns_R_work 1577 _refine_ls_shell.R_factor_R_work 0.220 _refine_ls_shell.percent_reflns_obs 98.11 _refine_ls_shell.R_factor_R_free 0.268 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 87 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 23390 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4F8K _struct.title 'Molecular analysis of the interaction between the prostacyclin receptor and the first PDZ domain of PDZK1' _struct.pdbx_descriptor 'Na(+)/H(+) exchange regulatory cofactor NHE-RF3, Prostacyclin receptor' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4F8K _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text 'PDZ domain, Adaptor protein, Prostacyclin receptor, Chimera protein, fusion protein, SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 38 ? ALA A 43 ? SER A 42 ALA A 47 1 ? 6 HELX_P HELX_P2 2 GLU A 63 ? SER A 74 ? GLU A 67 SER A 78 1 ? 12 HELX_P HELX_P3 3 ASP A 84 ? ASN A 94 ? ASP A 88 ASN A 98 1 ? 11 HELX_P HELX_P4 4 ASP A 97 ? LEU A 101 ? ASP A 101 LEU A 105 5 ? 5 HELX_P HELX_P5 5 SER B 38 ? ALA B 43 ? SER B 42 ALA B 47 1 ? 6 HELX_P HELX_P6 6 GLU B 63 ? LYS B 73 ? GLU B 67 LYS B 77 1 ? 11 HELX_P HELX_P7 7 ASP B 84 ? ASN B 94 ? ASP B 88 ASN B 98 1 ? 11 HELX_P HELX_P8 8 ASP B 97 ? LEU B 101 ? ASP B 101 LEU B 105 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? C ? 3 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 4 ? SER A 9 ? ARG A 8 SER A 13 A 2 SER A 77 ? LEU A 83 ? SER A 81 LEU A 87 A 3 ARG A 50 ? ILE A 54 ? ARG A 54 ILE A 58 A 4 VAL A 57 ? PHE A 58 ? VAL A 61 PHE A 62 B 1 PHE A 19 ? ARG A 21 ? PHE A 23 ARG A 25 B 2 LEU A 30 ? ARG A 32 ? LEU A 34 ARG A 36 C 1 ALA A 105 ? CYS A 109 ? ALA A 109 CYS A 113 C 2 PHE B 18 ? ILE B 22 ? PHE B 22 ILE B 26 C 3 LEU B 30 ? ARG B 32 ? LEU B 34 ARG B 36 D 1 ARG B 4 ? SER B 9 ? ARG B 8 SER B 13 D 2 SER B 77 ? LEU B 83 ? SER B 81 LEU B 87 D 3 ARG B 50 ? ILE B 54 ? ARG B 54 ILE B 58 D 4 VAL B 57 ? PHE B 58 ? VAL B 61 PHE B 62 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 6 ? N SER A 10 O LEU A 80 ? O LEU A 84 A 2 3 O LEU A 81 ? O LEU A 85 N LEU A 52 ? N LEU A 56 A 3 4 N ILE A 54 ? N ILE A 58 O VAL A 57 ? O VAL A 61 B 1 2 N PHE A 19 ? N PHE A 23 O ARG A 32 ? O ARG A 36 C 1 2 N CYS A 109 ? N CYS A 113 O PHE B 18 ? O PHE B 22 C 2 3 N PHE B 19 ? N PHE B 23 O ARG B 32 ? O ARG B 36 D 1 2 N SER B 6 ? N SER B 10 O LEU B 80 ? O LEU B 84 D 2 3 O LEU B 81 ? O LEU B 85 N LEU B 52 ? N LEU B 56 D 3 4 N ILE B 54 ? N ILE B 58 O VAL B 57 ? O VAL B 61 # _database_PDB_matrix.entry_id 4F8K _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4F8K _atom_sites.fract_transf_matrix[1][1] 0.025464 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000778 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014603 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024934 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 5 5 GLY GLY A . n A 1 2 SER 2 6 6 SER SER A . n A 1 3 PRO 3 7 7 PRO PRO A . n A 1 4 ARG 4 8 8 ARG ARG A . n A 1 5 GLU 5 9 9 GLU GLU A . n A 1 6 SER 6 10 10 SER SER A . n A 1 7 LYS 7 11 11 LYS LYS A . n A 1 8 LEU 8 12 12 LEU LEU A . n A 1 9 SER 9 13 13 SER SER A . n A 1 10 LYS 10 14 14 LYS LYS A . n A 1 11 GLN 11 15 15 GLN GLN A . n A 1 12 GLU 12 16 16 GLU GLU A . n A 1 13 GLY 13 17 17 GLY GLY A . n A 1 14 GLN 14 18 18 GLN GLN A . n A 1 15 ASN 15 19 19 ASN ASN A . n A 1 16 TYR 16 20 20 TYR TYR A . n A 1 17 GLY 17 21 21 GLY GLY A . n A 1 18 PHE 18 22 22 PHE PHE A . n A 1 19 PHE 19 23 23 PHE PHE A . n A 1 20 LEU 20 24 24 LEU LEU A . n A 1 21 ARG 21 25 25 ARG ARG A . n A 1 22 ILE 22 26 26 ILE ILE A . n A 1 23 GLU 23 27 27 GLU GLU A . n A 1 24 LYS 24 28 28 LYS LYS A . n A 1 25 ASP 25 29 29 ASP ASP A . n A 1 26 THR 26 30 30 THR THR A . n A 1 27 ASP 27 31 31 ASP ASP A . n A 1 28 GLY 28 32 32 GLY GLY A . n A 1 29 HIS 29 33 33 HIS HIS A . n A 1 30 LEU 30 34 34 LEU LEU A . n A 1 31 ILE 31 35 35 ILE ILE A . n A 1 32 ARG 32 36 36 ARG ARG A . n A 1 33 VAL 33 37 37 VAL VAL A . n A 1 34 ILE 34 38 38 ILE ILE A . n A 1 35 GLU 35 39 39 GLU GLU A . n A 1 36 GLU 36 40 40 GLU GLU A . n A 1 37 GLY 37 41 41 GLY GLY A . n A 1 38 SER 38 42 42 SER SER A . n A 1 39 PRO 39 43 43 PRO PRO A . n A 1 40 ALA 40 44 44 ALA ALA A . n A 1 41 GLU 41 45 45 GLU GLU A . n A 1 42 LYS 42 46 46 LYS LYS A . n A 1 43 ALA 43 47 47 ALA ALA A . n A 1 44 GLY 44 48 48 GLY GLY A . n A 1 45 LEU 45 49 49 LEU LEU A . n A 1 46 LEU 46 50 50 LEU LEU A . n A 1 47 ASP 47 51 51 ASP ASP A . n A 1 48 GLY 48 52 52 GLY GLY A . n A 1 49 ASP 49 53 53 ASP ASP A . n A 1 50 ARG 50 54 54 ARG ARG A . n A 1 51 VAL 51 55 55 VAL VAL A . n A 1 52 LEU 52 56 56 LEU LEU A . n A 1 53 ARG 53 57 57 ARG ARG A . n A 1 54 ILE 54 58 58 ILE ILE A . n A 1 55 ASN 55 59 59 ASN ASN A . n A 1 56 GLY 56 60 60 GLY GLY A . n A 1 57 VAL 57 61 61 VAL VAL A . n A 1 58 PHE 58 62 62 PHE PHE A . n A 1 59 VAL 59 63 63 VAL VAL A . n A 1 60 ASP 60 64 64 ASP ASP A . n A 1 61 LYS 61 65 65 LYS LYS A . n A 1 62 GLU 62 66 66 GLU GLU A . n A 1 63 GLU 63 67 67 GLU GLU A . n A 1 64 HIS 64 68 68 HIS HIS A . n A 1 65 ALA 65 69 69 ALA ALA A . n A 1 66 GLN 66 70 70 GLN GLN A . n A 1 67 VAL 67 71 71 VAL VAL A . n A 1 68 VAL 68 72 72 VAL VAL A . n A 1 69 GLU 69 73 73 GLU GLU A . n A 1 70 LEU 70 74 74 LEU LEU A . n A 1 71 VAL 71 75 75 VAL VAL A . n A 1 72 ARG 72 76 76 ARG ARG A . n A 1 73 LYS 73 77 77 LYS LYS A . n A 1 74 SER 74 78 78 SER SER A . n A 1 75 GLY 75 79 79 GLY GLY A . n A 1 76 ASN 76 80 80 ASN ASN A . n A 1 77 SER 77 81 81 SER SER A . n A 1 78 VAL 78 82 82 VAL VAL A . n A 1 79 THR 79 83 83 THR THR A . n A 1 80 LEU 80 84 84 LEU LEU A . n A 1 81 LEU 81 85 85 LEU LEU A . n A 1 82 VAL 82 86 86 VAL VAL A . n A 1 83 LEU 83 87 87 LEU LEU A . n A 1 84 ASP 84 88 88 ASP ASP A . n A 1 85 GLY 85 89 89 GLY GLY A . n A 1 86 ASP 86 90 90 ASP ASP A . n A 1 87 SER 87 91 91 SER SER A . n A 1 88 TYR 88 92 92 TYR TYR A . n A 1 89 GLU 89 93 93 GLU GLU A . n A 1 90 LYS 90 94 94 LYS LYS A . n A 1 91 ALA 91 95 95 ALA ALA A . n A 1 92 VAL 92 96 96 VAL VAL A . n A 1 93 LYS 93 97 97 LYS LYS A . n A 1 94 ASN 94 98 98 ASN ASN A . n A 1 95 GLN 95 99 99 GLN GLN A . n A 1 96 VAL 96 100 100 VAL VAL A . n A 1 97 ASP 97 101 101 ASP ASP A . n A 1 98 LEU 98 102 102 LEU LEU A . n A 1 99 LYS 99 103 103 LYS LYS A . n A 1 100 GLU 100 104 104 GLU GLU A . n A 1 101 LEU 101 105 105 LEU LEU A . n A 1 102 ASP 102 106 106 ASP ASP A . n A 1 103 ILE 103 107 107 ILE ILE A . n A 1 104 ALA 104 108 108 ALA ALA A . n A 1 105 ALA 105 109 109 ALA ALA A . n A 1 106 CYS 106 110 110 CYS CYS A . n A 1 107 SER 107 111 111 SER SER A . n A 1 108 LEU 108 112 112 LEU LEU A . n A 1 109 CYS 109 113 113 CYS CYS A . n B 1 1 GLY 1 5 5 GLY GLY B . n B 1 2 SER 2 6 6 SER SER B . n B 1 3 PRO 3 7 7 PRO PRO B . n B 1 4 ARG 4 8 8 ARG ARG B . n B 1 5 GLU 5 9 9 GLU GLU B . n B 1 6 SER 6 10 10 SER SER B . n B 1 7 LYS 7 11 11 LYS LYS B . n B 1 8 LEU 8 12 12 LEU LEU B . n B 1 9 SER 9 13 13 SER SER B . n B 1 10 LYS 10 14 14 LYS LYS B . n B 1 11 GLN 11 15 15 GLN GLN B . n B 1 12 GLU 12 16 16 GLU GLU B . n B 1 13 GLY 13 17 17 GLY GLY B . n B 1 14 GLN 14 18 18 GLN GLN B . n B 1 15 ASN 15 19 19 ASN ASN B . n B 1 16 TYR 16 20 20 TYR TYR B . n B 1 17 GLY 17 21 21 GLY GLY B . n B 1 18 PHE 18 22 22 PHE PHE B . n B 1 19 PHE 19 23 23 PHE PHE B . n B 1 20 LEU 20 24 24 LEU LEU B . n B 1 21 ARG 21 25 25 ARG ARG B . n B 1 22 ILE 22 26 26 ILE ILE B . n B 1 23 GLU 23 27 27 GLU GLU B . n B 1 24 LYS 24 28 28 LYS LYS B . n B 1 25 ASP 25 29 29 ASP ASP B . n B 1 26 THR 26 30 30 THR THR B . n B 1 27 ASP 27 31 31 ASP ASP B . n B 1 28 GLY 28 32 32 GLY GLY B . n B 1 29 HIS 29 33 33 HIS HIS B . n B 1 30 LEU 30 34 34 LEU LEU B . n B 1 31 ILE 31 35 35 ILE ILE B . n B 1 32 ARG 32 36 36 ARG ARG B . n B 1 33 VAL 33 37 37 VAL VAL B . n B 1 34 ILE 34 38 38 ILE ILE B . n B 1 35 GLU 35 39 39 GLU GLU B . n B 1 36 GLU 36 40 40 GLU GLU B . n B 1 37 GLY 37 41 41 GLY GLY B . n B 1 38 SER 38 42 42 SER SER B . n B 1 39 PRO 39 43 43 PRO PRO B . n B 1 40 ALA 40 44 44 ALA ALA B . n B 1 41 GLU 41 45 45 GLU GLU B . n B 1 42 LYS 42 46 46 LYS LYS B . n B 1 43 ALA 43 47 47 ALA ALA B . n B 1 44 GLY 44 48 48 GLY GLY B . n B 1 45 LEU 45 49 49 LEU LEU B . n B 1 46 LEU 46 50 50 LEU LEU B . n B 1 47 ASP 47 51 51 ASP ASP B . n B 1 48 GLY 48 52 52 GLY GLY B . n B 1 49 ASP 49 53 53 ASP ASP B . n B 1 50 ARG 50 54 54 ARG ARG B . n B 1 51 VAL 51 55 55 VAL VAL B . n B 1 52 LEU 52 56 56 LEU LEU B . n B 1 53 ARG 53 57 57 ARG ARG B . n B 1 54 ILE 54 58 58 ILE ILE B . n B 1 55 ASN 55 59 59 ASN ASN B . n B 1 56 GLY 56 60 60 GLY GLY B . n B 1 57 VAL 57 61 61 VAL VAL B . n B 1 58 PHE 58 62 62 PHE PHE B . n B 1 59 VAL 59 63 63 VAL VAL B . n B 1 60 ASP 60 64 64 ASP ASP B . n B 1 61 LYS 61 65 65 LYS LYS B . n B 1 62 GLU 62 66 66 GLU GLU B . n B 1 63 GLU 63 67 67 GLU GLU B . n B 1 64 HIS 64 68 68 HIS HIS B . n B 1 65 ALA 65 69 69 ALA ALA B . n B 1 66 GLN 66 70 70 GLN GLN B . n B 1 67 VAL 67 71 71 VAL VAL B . n B 1 68 VAL 68 72 72 VAL VAL B . n B 1 69 GLU 69 73 73 GLU GLU B . n B 1 70 LEU 70 74 74 LEU LEU B . n B 1 71 VAL 71 75 75 VAL VAL B . n B 1 72 ARG 72 76 76 ARG ARG B . n B 1 73 LYS 73 77 77 LYS LYS B . n B 1 74 SER 74 78 78 SER SER B . n B 1 75 GLY 75 79 79 GLY GLY B . n B 1 76 ASN 76 80 80 ASN ASN B . n B 1 77 SER 77 81 81 SER SER B . n B 1 78 VAL 78 82 82 VAL VAL B . n B 1 79 THR 79 83 83 THR THR B . n B 1 80 LEU 80 84 84 LEU LEU B . n B 1 81 LEU 81 85 85 LEU LEU B . n B 1 82 VAL 82 86 86 VAL VAL B . n B 1 83 LEU 83 87 87 LEU LEU B . n B 1 84 ASP 84 88 88 ASP ASP B . n B 1 85 GLY 85 89 89 GLY GLY B . n B 1 86 ASP 86 90 90 ASP ASP B . n B 1 87 SER 87 91 91 SER SER B . n B 1 88 TYR 88 92 92 TYR TYR B . n B 1 89 GLU 89 93 93 GLU GLU B . n B 1 90 LYS 90 94 94 LYS LYS B . n B 1 91 ALA 91 95 95 ALA ALA B . n B 1 92 VAL 92 96 96 VAL VAL B . n B 1 93 LYS 93 97 97 LYS LYS B . n B 1 94 ASN 94 98 98 ASN ASN B . n B 1 95 GLN 95 99 99 GLN GLN B . n B 1 96 VAL 96 100 100 VAL VAL B . n B 1 97 ASP 97 101 101 ASP ASP B . n B 1 98 LEU 98 102 102 LEU LEU B . n B 1 99 LYS 99 103 103 LYS LYS B . n B 1 100 GLU 100 104 104 GLU GLU B . n B 1 101 LEU 101 105 105 LEU LEU B . n B 1 102 ASP 102 106 106 ASP ASP B . n B 1 103 ILE 103 107 107 ILE ILE B . n B 1 104 ALA 104 108 108 ALA ALA B . n B 1 105 ALA 105 109 109 ALA ALA B . n B 1 106 CYS 106 110 110 CYS CYS B . n B 1 107 SER 107 111 111 SER SER B . n B 1 108 LEU 108 112 112 LEU LEU B . n B 1 109 CYS 109 113 113 CYS CYS B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 201 4 HOH HOH A . C 2 HOH 2 202 7 HOH HOH A . C 2 HOH 3 203 8 HOH HOH A . C 2 HOH 4 204 9 HOH HOH A . C 2 HOH 5 205 10 HOH HOH A . C 2 HOH 6 206 13 HOH HOH A . C 2 HOH 7 207 15 HOH HOH A . C 2 HOH 8 208 18 HOH HOH A . C 2 HOH 9 209 20 HOH HOH A . C 2 HOH 10 210 21 HOH HOH A . C 2 HOH 11 211 22 HOH HOH A . C 2 HOH 12 212 23 HOH HOH A . C 2 HOH 13 213 24 HOH HOH A . C 2 HOH 14 214 27 HOH HOH A . C 2 HOH 15 215 28 HOH HOH A . C 2 HOH 16 216 30 HOH HOH A . C 2 HOH 17 217 31 HOH HOH A . C 2 HOH 18 218 32 HOH HOH A . C 2 HOH 19 219 33 HOH HOH A . C 2 HOH 20 220 35 HOH HOH A . C 2 HOH 21 221 41 HOH HOH A . C 2 HOH 22 222 42 HOH HOH A . C 2 HOH 23 223 44 HOH HOH A . C 2 HOH 24 224 45 HOH HOH A . C 2 HOH 25 225 52 HOH HOH A . C 2 HOH 26 226 53 HOH HOH A . C 2 HOH 27 227 54 HOH HOH A . C 2 HOH 28 228 55 HOH HOH A . C 2 HOH 29 229 56 HOH HOH A . C 2 HOH 30 230 57 HOH HOH A . C 2 HOH 31 231 58 HOH HOH A . C 2 HOH 32 232 60 HOH HOH A . C 2 HOH 33 233 62 HOH HOH A . C 2 HOH 34 234 64 HOH HOH A . C 2 HOH 35 235 70 HOH HOH A . C 2 HOH 36 236 73 HOH HOH A . C 2 HOH 37 237 77 HOH HOH A . C 2 HOH 38 238 81 HOH HOH A . C 2 HOH 39 239 82 HOH HOH A . C 2 HOH 40 240 84 HOH HOH A . C 2 HOH 41 241 87 HOH HOH A . C 2 HOH 42 242 89 HOH HOH A . C 2 HOH 43 243 91 HOH HOH A . C 2 HOH 44 244 92 HOH HOH A . C 2 HOH 45 245 93 HOH HOH A . C 2 HOH 46 246 94 HOH HOH A . C 2 HOH 47 247 96 HOH HOH A . C 2 HOH 48 248 98 HOH HOH A . C 2 HOH 49 249 99 HOH HOH A . C 2 HOH 50 250 101 HOH HOH A . C 2 HOH 51 251 102 HOH HOH A . C 2 HOH 52 252 103 HOH HOH A . C 2 HOH 53 253 106 HOH HOH A . C 2 HOH 54 254 109 HOH HOH A . C 2 HOH 55 255 113 HOH HOH A . C 2 HOH 56 256 115 HOH HOH A . C 2 HOH 57 257 116 HOH HOH A . C 2 HOH 58 258 120 HOH HOH A . C 2 HOH 59 259 121 HOH HOH A . C 2 HOH 60 260 123 HOH HOH A . C 2 HOH 61 261 124 HOH HOH A . C 2 HOH 62 262 125 HOH HOH A . C 2 HOH 63 263 126 HOH HOH A . C 2 HOH 64 264 127 HOH HOH A . C 2 HOH 65 265 128 HOH HOH A . C 2 HOH 66 266 130 HOH HOH A . C 2 HOH 67 267 133 HOH HOH A . C 2 HOH 68 268 135 HOH HOH A . D 2 HOH 1 201 1 HOH HOH B . D 2 HOH 2 202 2 HOH HOH B . D 2 HOH 3 203 3 HOH HOH B . D 2 HOH 4 204 5 HOH HOH B . D 2 HOH 5 205 6 HOH HOH B . D 2 HOH 6 206 11 HOH HOH B . D 2 HOH 7 207 12 HOH HOH B . D 2 HOH 8 208 14 HOH HOH B . D 2 HOH 9 209 16 HOH HOH B . D 2 HOH 10 210 17 HOH HOH B . D 2 HOH 11 211 19 HOH HOH B . D 2 HOH 12 212 25 HOH HOH B . D 2 HOH 13 213 26 HOH HOH B . D 2 HOH 14 214 29 HOH HOH B . D 2 HOH 15 215 34 HOH HOH B . D 2 HOH 16 216 36 HOH HOH B . D 2 HOH 17 217 37 HOH HOH B . D 2 HOH 18 218 38 HOH HOH B . D 2 HOH 19 219 39 HOH HOH B . D 2 HOH 20 220 40 HOH HOH B . D 2 HOH 21 221 43 HOH HOH B . D 2 HOH 22 222 46 HOH HOH B . D 2 HOH 23 223 47 HOH HOH B . D 2 HOH 24 224 48 HOH HOH B . D 2 HOH 25 225 49 HOH HOH B . D 2 HOH 26 226 50 HOH HOH B . D 2 HOH 27 227 51 HOH HOH B . D 2 HOH 28 228 59 HOH HOH B . D 2 HOH 29 229 61 HOH HOH B . D 2 HOH 30 230 63 HOH HOH B . D 2 HOH 31 231 65 HOH HOH B . D 2 HOH 32 232 66 HOH HOH B . D 2 HOH 33 233 67 HOH HOH B . D 2 HOH 34 234 68 HOH HOH B . D 2 HOH 35 235 69 HOH HOH B . D 2 HOH 36 236 71 HOH HOH B . D 2 HOH 37 237 72 HOH HOH B . D 2 HOH 38 238 74 HOH HOH B . D 2 HOH 39 239 75 HOH HOH B . D 2 HOH 40 240 76 HOH HOH B . D 2 HOH 41 241 78 HOH HOH B . D 2 HOH 42 242 79 HOH HOH B . D 2 HOH 43 243 80 HOH HOH B . D 2 HOH 44 244 83 HOH HOH B . D 2 HOH 45 245 86 HOH HOH B . D 2 HOH 46 246 88 HOH HOH B . D 2 HOH 47 247 90 HOH HOH B . D 2 HOH 48 248 97 HOH HOH B . D 2 HOH 49 249 100 HOH HOH B . D 2 HOH 50 250 104 HOH HOH B . D 2 HOH 51 251 105 HOH HOH B . D 2 HOH 52 252 107 HOH HOH B . D 2 HOH 53 253 108 HOH HOH B . D 2 HOH 54 254 111 HOH HOH B . D 2 HOH 55 255 114 HOH HOH B . D 2 HOH 56 256 117 HOH HOH B . D 2 HOH 57 257 118 HOH HOH B . D 2 HOH 58 258 119 HOH HOH B . D 2 HOH 59 259 122 HOH HOH B . D 2 HOH 60 260 129 HOH HOH B . D 2 HOH 61 261 131 HOH HOH B . D 2 HOH 62 262 132 HOH HOH B . D 2 HOH 63 263 134 HOH HOH B . D 2 HOH 64 264 136 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C 2 1 B,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-02-27 2 'Structure model' 1 1 2013-03-27 3 'Structure model' 1 2 2017-08-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' 3 3 'Structure model' 'Source and taxonomy' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' entity_src_gen 2 3 'Structure model' software # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CBASS 'data collection' . ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.6.0117 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_entry_details.sequence_details ;CHIMERIC PDZ1-IP PROTEIN CONTAINS RESIDUES 7-106 OF PDZ1 FUSED TO THE SEVEN CARBOXY-TERMINAL AMINO ACIDS OF MOUSE IP (RESIDUES 409-415). ; _pdbx_entry_details.entry_id 4F8K _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 8 ? ? CZ A ARG 8 ? ? NH1 A ARG 8 ? ? 125.38 120.30 5.08 0.50 N 2 1 NE A ARG 8 ? ? CZ A ARG 8 ? ? NH2 A ARG 8 ? ? 115.22 120.30 -5.08 0.50 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id VAL _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 37 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 51.44 _pdbx_validate_torsion.psi 71.73 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #