HEADER TRANSFERASE/TRANSFERASE INHIBITOR 21-MAY-12 4F9W TITLE HUMAN P38ALPHA MAPK IN COMPLEX WITH A NOVEL AND SELECTIVE SMALL TITLE 2 MOLECULE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 14; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MAP KINASE 14, MAPK 14, CYTOKINE SUPPRESSIVE ANTI- COMPND 5 INFLAMMATORY DRUG-BINDING PROTEIN, CSAID-BINDING PROTEIN, CSBP, MAP COMPND 6 KINASE MXI2, MAX-INTERACTING PROTEIN 2, MITOGEN-ACTIVATED PROTEIN COMPND 7 KINASE P38 ALPHA, MAP KINASE P38 ALPHA, STRESS-ACTIVATED PROTEIN COMPND 8 KINASE 2A, SAPK2A; COMPND 9 EC: 2.7.11.24; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAPK14, CSBP, CSBP1, CSBP2, CSPB1, MXI2, SAPK2A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: BL21(DE3)PLYSS KEYWDS PROTEIN KINASE CATALYTIC DOMAIN, TRANSFERASE-TRANSFERASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR V.L.GRUM-TOKARS,G.MINASOV,W.F.ANDERSON,D.M.WATTERSON REVDAT 5 13-SEP-23 4F9W 1 REMARK LINK REVDAT 4 01-JAN-20 4F9W 1 REMARK SEQADV SEQRES REVDAT 3 24-JUL-13 4F9W 1 JRNL REVDAT 2 12-JUN-13 4F9W 1 JRNL REVDAT 1 05-JUN-13 4F9W 0 JRNL AUTH D.M.WATTERSON,V.L.GRUM-TOKARS,S.M.ROY,J.P.SCHAVOCKY, JRNL AUTH 2 B.D.BRADARIC,A.D.BACHSTETTER,B.XING,E.DIMAYUGA,F.SAEED, JRNL AUTH 3 H.ZHANG,A.STANISZEWSKI,J.C.PELLETIER,G.MINASOV,W.F.ANDERSON, JRNL AUTH 4 O.ARANCIO,L.J.VAN ELDIK JRNL TITL DEVELOPMENT OF NOVEL IN VIVO CHEMICAL PROBES TO ADDRESS CNS JRNL TITL 2 PROTEIN KINASE INVOLVEMENT IN SYNAPTIC DYSFUNCTION. JRNL REF PLOS ONE V. 8 66226 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23840427 JRNL DOI 10.1371/JOURNAL.PONE.0066226 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 24816 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1327 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1637 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2712 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 182 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.20000 REMARK 3 B22 (A**2) : -1.50000 REMARK 3 B33 (A**2) : 2.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.170 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.154 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.108 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.498 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2918 ; 0.012 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1964 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3968 ; 1.504 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4784 ; 0.841 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 348 ; 2.917 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;31.505 ;24.191 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 497 ;10.861 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;18.776 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 433 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3234 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 607 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 71 REMARK 3 ORIGIN FOR THE GROUP (A): -13.0864 3.7768 18.5842 REMARK 3 T TENSOR REMARK 3 T11: 0.1259 T22: 0.0736 REMARK 3 T33: 0.0940 T12: 0.0200 REMARK 3 T13: 0.0361 T23: 0.0235 REMARK 3 L TENSOR REMARK 3 L11: 3.0070 L22: 3.2688 REMARK 3 L33: 3.6943 L12: 0.2952 REMARK 3 L13: -1.7095 L23: -2.3826 REMARK 3 S TENSOR REMARK 3 S11: 0.1607 S12: -0.2229 S13: -0.0794 REMARK 3 S21: 0.3977 S22: 0.0827 S23: 0.4035 REMARK 3 S31: -0.4104 S32: -0.1350 S33: -0.2434 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 72 A 164 REMARK 3 ORIGIN FOR THE GROUP (A): 2.1972 -1.8206 16.2918 REMARK 3 T TENSOR REMARK 3 T11: 0.0965 T22: 0.0333 REMARK 3 T33: 0.0427 T12: 0.0026 REMARK 3 T13: 0.0065 T23: 0.0145 REMARK 3 L TENSOR REMARK 3 L11: 3.1052 L22: 1.3795 REMARK 3 L33: 0.9959 L12: 0.0575 REMARK 3 L13: -0.1468 L23: -0.6086 REMARK 3 S TENSOR REMARK 3 S11: 0.0932 S12: -0.0220 S13: -0.2008 REMARK 3 S21: -0.0311 S22: -0.0615 S23: 0.1336 REMARK 3 S31: 0.0644 S32: -0.0067 S33: -0.0317 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 165 A 250 REMARK 3 ORIGIN FOR THE GROUP (A): 19.5140 10.0643 18.5859 REMARK 3 T TENSOR REMARK 3 T11: 0.0651 T22: 0.0843 REMARK 3 T33: 0.0695 T12: -0.0008 REMARK 3 T13: -0.0050 T23: 0.0303 REMARK 3 L TENSOR REMARK 3 L11: 2.8519 L22: 2.4995 REMARK 3 L33: 1.4486 L12: 1.3523 REMARK 3 L13: -0.2862 L23: -0.3181 REMARK 3 S TENSOR REMARK 3 S11: 0.0772 S12: -0.2112 S13: 0.2551 REMARK 3 S21: 0.1259 S22: -0.1209 S23: -0.0290 REMARK 3 S31: -0.0332 S32: 0.0677 S33: 0.0437 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 251 A 352 REMARK 3 ORIGIN FOR THE GROUP (A): 14.7295 3.5988 11.1037 REMARK 3 T TENSOR REMARK 3 T11: 0.1284 T22: 0.1013 REMARK 3 T33: 0.0464 T12: 0.0310 REMARK 3 T13: 0.0196 T23: 0.0407 REMARK 3 L TENSOR REMARK 3 L11: 2.5196 L22: 1.2884 REMARK 3 L33: 0.5887 L12: -0.1812 REMARK 3 L13: -0.2808 L23: -0.2597 REMARK 3 S TENSOR REMARK 3 S11: 0.0687 S12: 0.0709 S13: -0.0231 REMARK 3 S21: -0.0944 S22: -0.0820 S23: -0.1611 REMARK 3 S31: 0.0426 S32: 0.1399 S33: 0.0133 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4F9W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000072638. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26189 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.67800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.520 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3HVC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M AMMONIUM ACETATE, 0.1 M BIS-TRIS REMARK 280 PH 5.5, 17% PEG 10000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.83550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.63500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.15550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.63500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.83550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.15550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 SER A -15 REMARK 465 SER A -14 REMARK 465 GLY A -13 REMARK 465 VAL A -12 REMARK 465 ASP A -11 REMARK 465 LEU A -10 REMARK 465 GLY A -9 REMARK 465 THR A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 SER A -1 REMARK 465 ASN A 0 REMARK 465 ALA A 1 REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 GLU A 4 REMARK 465 ALA A 172 REMARK 465 ARG A 173 REMARK 465 HIS A 174 REMARK 465 THR A 175 REMARK 465 ASP A 176 REMARK 465 ASP A 177 REMARK 465 GLU A 178 REMARK 465 MET A 179 REMARK 465 THR A 180 REMARK 465 GLY A 181 REMARK 465 TYR A 182 REMARK 465 VAL A 183 REMARK 465 LEU A 353 REMARK 465 ASP A 354 REMARK 465 GLN A 355 REMARK 465 GLU A 356 REMARK 465 GLU A 357 REMARK 465 MET A 358 REMARK 465 GLU A 359 REMARK 465 SER A 360 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 169 N - CA - C ANGL. DEV. = 18.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 15 -2.44 70.54 REMARK 500 CYS A 119 101.42 -164.14 REMARK 500 GLN A 120 -133.62 -117.86 REMARK 500 ARG A 149 -14.90 83.11 REMARK 500 LEU A 289 50.08 -92.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 64 NE2 REMARK 620 2 ASP A 161 OD2 81.3 REMARK 620 3 ACT A 405 O 97.6 58.5 REMARK 620 4 HOH A 674 O 115.5 57.4 99.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GG5 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GG5 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LM4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 407 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EWQ RELATED DB: PDB REMARK 900 RELATED ID: 4F9Y RELATED DB: PDB REMARK 900 RELATED ID: 4FA2 RELATED DB: PDB DBREF 4F9W A 2 360 UNP Q16539 MK14_HUMAN 2 360 SEQADV 4F9W MET A -22 UNP Q16539 EXPRESSION TAG SEQADV 4F9W HIS A -21 UNP Q16539 EXPRESSION TAG SEQADV 4F9W HIS A -20 UNP Q16539 EXPRESSION TAG SEQADV 4F9W HIS A -19 UNP Q16539 EXPRESSION TAG SEQADV 4F9W HIS A -18 UNP Q16539 EXPRESSION TAG SEQADV 4F9W HIS A -17 UNP Q16539 EXPRESSION TAG SEQADV 4F9W HIS A -16 UNP Q16539 EXPRESSION TAG SEQADV 4F9W SER A -15 UNP Q16539 EXPRESSION TAG SEQADV 4F9W SER A -14 UNP Q16539 EXPRESSION TAG SEQADV 4F9W GLY A -13 UNP Q16539 EXPRESSION TAG SEQADV 4F9W VAL A -12 UNP Q16539 EXPRESSION TAG SEQADV 4F9W ASP A -11 UNP Q16539 EXPRESSION TAG SEQADV 4F9W LEU A -10 UNP Q16539 EXPRESSION TAG SEQADV 4F9W GLY A -9 UNP Q16539 EXPRESSION TAG SEQADV 4F9W THR A -8 UNP Q16539 EXPRESSION TAG SEQADV 4F9W GLU A -7 UNP Q16539 EXPRESSION TAG SEQADV 4F9W ASN A -6 UNP Q16539 EXPRESSION TAG SEQADV 4F9W LEU A -5 UNP Q16539 EXPRESSION TAG SEQADV 4F9W TYR A -4 UNP Q16539 EXPRESSION TAG SEQADV 4F9W PHE A -3 UNP Q16539 EXPRESSION TAG SEQADV 4F9W GLN A -2 UNP Q16539 EXPRESSION TAG SEQADV 4F9W SER A -1 UNP Q16539 EXPRESSION TAG SEQADV 4F9W ASN A 0 UNP Q16539 EXPRESSION TAG SEQADV 4F9W ALA A 1 UNP Q16539 EXPRESSION TAG SEQRES 1 A 383 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 383 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA SER GLN SEQRES 3 A 383 GLU ARG PRO THR PHE TYR ARG GLN GLU LEU ASN LYS THR SEQRES 4 A 383 ILE TRP GLU VAL PRO GLU ARG TYR GLN ASN LEU SER PRO SEQRES 5 A 383 VAL GLY SER GLY ALA TYR GLY SER VAL CYS ALA ALA PHE SEQRES 6 A 383 ASP THR LYS THR GLY LEU ARG VAL ALA VAL LYS LYS LEU SEQRES 7 A 383 SER ARG PRO PHE GLN SER ILE ILE HIS ALA LYS ARG THR SEQRES 8 A 383 TYR ARG GLU LEU ARG LEU LEU LYS HIS MET LYS HIS GLU SEQRES 9 A 383 ASN VAL ILE GLY LEU LEU ASP VAL PHE THR PRO ALA ARG SEQRES 10 A 383 SER LEU GLU GLU PHE ASN ASP VAL TYR LEU VAL THR HIS SEQRES 11 A 383 LEU MET GLY ALA ASP LEU ASN ASN ILE VAL LYS CYS GLN SEQRES 12 A 383 LYS LEU THR ASP ASP HIS VAL GLN PHE LEU ILE TYR GLN SEQRES 13 A 383 ILE LEU ARG GLY LEU LYS TYR ILE HIS SER ALA ASP ILE SEQRES 14 A 383 ILE HIS ARG ASP LEU LYS PRO SER ASN LEU ALA VAL ASN SEQRES 15 A 383 GLU ASP CYS GLU LEU LYS ILE LEU ASP PHE GLY LEU ALA SEQRES 16 A 383 ARG HIS THR ASP ASP GLU MET THR GLY TYR VAL ALA THR SEQRES 17 A 383 ARG TRP TYR ARG ALA PRO GLU ILE MET LEU ASN TRP MET SEQRES 18 A 383 HIS TYR ASN GLN THR VAL ASP ILE TRP SER VAL GLY CYS SEQRES 19 A 383 ILE MET ALA GLU LEU LEU THR GLY ARG THR LEU PHE PRO SEQRES 20 A 383 GLY THR ASP HIS ILE ASP GLN LEU LYS LEU ILE LEU ARG SEQRES 21 A 383 LEU VAL GLY THR PRO GLY ALA GLU LEU LEU LYS LYS ILE SEQRES 22 A 383 SER SER GLU SER ALA ARG ASN TYR ILE GLN SER LEU THR SEQRES 23 A 383 GLN MET PRO LYS MET ASN PHE ALA ASN VAL PHE ILE GLY SEQRES 24 A 383 ALA ASN PRO LEU ALA VAL ASP LEU LEU GLU LYS MET LEU SEQRES 25 A 383 VAL LEU ASP SER ASP LYS ARG ILE THR ALA ALA GLN ALA SEQRES 26 A 383 LEU ALA HIS ALA TYR PHE ALA GLN TYR HIS ASP PRO ASP SEQRES 27 A 383 ASP GLU PRO VAL ALA ASP PRO TYR ASP GLN SER PHE GLU SEQRES 28 A 383 SER ARG ASP LEU LEU ILE ASP GLU TRP LYS SER LEU THR SEQRES 29 A 383 TYR ASP GLU VAL ILE SER PHE VAL PRO PRO PRO LEU ASP SEQRES 30 A 383 GLN GLU GLU MET GLU SER HET GG5 A 401 18 HET GG5 A 402 18 HET LM4 A 403 25 HET ZN A 404 1 HET ACT A 405 4 HET BME A 406 4 HET GOL A 407 6 HETNAM GG5 4-[3-(4-FLUOROPHENYL)-1H-PYRAZOL-4-YL]PYRIDINE HETNAM LM4 N,N-DIMETHYL-6-(NAPHTHALEN-2-YL)-5-(PYRIDIN-4-YL) HETNAM 2 LM4 PYRIDAZIN-3-AMINE HETNAM ZN ZINC ION HETNAM ACT ACETATE ION HETNAM BME BETA-MERCAPTOETHANOL HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GG5 2(C14 H10 F N3) FORMUL 4 LM4 C21 H18 N4 FORMUL 5 ZN ZN 2+ FORMUL 6 ACT C2 H3 O2 1- FORMUL 7 BME C2 H6 O S FORMUL 8 GOL C3 H8 O3 FORMUL 9 HOH *182(H2 O) HELIX 1 1 SER A 61 MET A 78 1 18 HELIX 2 2 LEU A 113 LYS A 118 1 6 HELIX 3 3 THR A 123 ALA A 144 1 22 HELIX 4 4 LYS A 152 SER A 154 5 3 HELIX 5 5 ALA A 184 ARG A 189 5 6 HELIX 6 6 ALA A 190 LEU A 195 1 6 HELIX 7 7 THR A 203 GLY A 219 1 17 HELIX 8 8 ASP A 227 GLY A 240 1 14 HELIX 9 9 GLY A 243 LYS A 248 1 6 HELIX 10 10 SER A 252 LEU A 262 1 11 HELIX 11 11 ASN A 269 PHE A 274 1 6 HELIX 12 12 ASN A 278 LEU A 289 1 12 HELIX 13 13 ASP A 292 ARG A 296 5 5 HELIX 14 14 THR A 298 ALA A 304 1 7 HELIX 15 15 HIS A 305 ALA A 309 5 5 HELIX 16 16 ASP A 313 GLU A 317 5 5 HELIX 17 17 GLN A 325 ARG A 330 5 6 HELIX 18 18 LEU A 333 SER A 347 1 15 SHEET 1 A 2 PHE A 8 LEU A 13 0 SHEET 2 A 2 THR A 16 PRO A 21 -1 O THR A 16 N LEU A 13 SHEET 1 B 5 TYR A 24 SER A 32 0 SHEET 2 B 5 GLY A 36 ASP A 43 -1 O ALA A 40 N SER A 28 SHEET 3 B 5 LEU A 48 LEU A 55 -1 O VAL A 52 N CYS A 39 SHEET 4 B 5 TYR A 103 HIS A 107 -1 O THR A 106 N ALA A 51 SHEET 5 B 5 ASP A 88 PHE A 90 -1 N ASP A 88 O VAL A 105 SHEET 1 C 3 ALA A 111 ASP A 112 0 SHEET 2 C 3 LEU A 156 VAL A 158 -1 O VAL A 158 N ALA A 111 SHEET 3 C 3 LEU A 164 ILE A 166 -1 O LYS A 165 N ALA A 157 LINK NE2 HIS A 64 ZN ZN A 404 1555 1555 2.39 LINK OD2AASP A 161 ZN ZN A 404 1555 3545 2.07 LINK ZN ZN A 404 O ACT A 405 1555 1555 2.46 LINK ZN ZN A 404 O HOH A 674 1555 1555 2.02 CISPEP 1 CYS A 119 GLN A 120 0 -0.66 CISPEP 2 PHE A 169 GLY A 170 0 -0.15 SITE 1 AC1 11 GLU A 192 LEU A 195 TRP A 197 PRO A 242 SITE 2 AC1 11 LEU A 246 LYS A 249 ILE A 250 ILE A 259 SITE 3 AC1 11 LEU A 291 SER A 293 HOH A 515 SITE 1 AC2 6 GLU A 22 THR A 44 MET A 194 SER A 254 SITE 2 AC2 6 ALA A 255 TYR A 258 SITE 1 AC3 12 ALA A 51 LYS A 53 ILE A 84 LEU A 104 SITE 2 AC3 12 VAL A 105 THR A 106 HIS A 107 MET A 109 SITE 3 AC3 12 SER A 154 LEU A 167 ASP A 168 HOH A 640 SITE 1 AC4 5 HIS A 64 ASP A 161 GLU A 163 ACT A 405 SITE 2 AC4 5 HOH A 674 SITE 1 AC5 3 HIS A 64 GLU A 163 ZN A 404 SITE 1 AC6 3 HIS A 126 GLU A 160 CYS A 162 SITE 1 AC7 4 GLU A 22 GLN A 25 ASN A 269 ASN A 272 CRYST1 65.671 74.311 77.270 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015227 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013457 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012942 0.00000