HEADER TRANSFERASE/TRANSFERASE INHIBITOR 21-MAY-12 4F9Y TITLE HUMAN P38 ALPHA MAPK IN COMPLEX WITH A NOVEL AND SELECTIVE SMALL TITLE 2 MOLECULE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 14; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MAP KINASE 14, MAPK 14, CYTOKINE SUPPRESSIVE ANTI- COMPND 5 INFLAMMATORY DRUG-BINDING PROTEIN, CSAID-BINDING PROTEIN, CSBP, MAP COMPND 6 KINASE MXI2, MAX-INTERACTING PROTEIN 2, MITOGEN-ACTIVATED PROTEIN COMPND 7 KINASE P38 ALPHA, MAP KINASE P38 ALPHA, STRESS-ACTIVATED PROTEIN COMPND 8 KINASE 2A, SAPK2A; COMPND 9 EC: 2.7.11.24; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAPK14, CSBP, CSBP1, CSBP2, CSPB1, MXI2, SAPK2A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS KEYWDS PROTEIN KINASE CATALYTIC DOMAIN, TRANSFERASE-TRANSFERASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR V.L.GRUM-TOKARS,G.MINASOV,W.F.ANDERSON,D.M.WATTERSON REVDAT 4 01-JAN-20 4F9Y 1 SEQADV LINK REVDAT 3 24-JUL-13 4F9Y 1 JRNL REVDAT 2 12-JUN-13 4F9Y 1 JRNL REVDAT 1 05-JUN-13 4F9Y 0 JRNL AUTH D.M.WATTERSON,V.L.GRUM-TOKARS,S.M.ROY,J.P.SCHAVOCKY, JRNL AUTH 2 B.D.BRADARIC,A.D.BACHSTETTER,B.XING,E.DIMAYUGA,F.SAEED, JRNL AUTH 3 H.ZHANG,A.STANISZEWSKI,J.C.PELLETIER,G.MINASOV,W.F.ANDERSON, JRNL AUTH 4 O.ARANCIO,L.J.VAN ELDIK JRNL TITL DEVELOPMENT OF NOVEL IN VIVO CHEMICAL PROBES TO ADDRESS CNS JRNL TITL 2 PROTEIN KINASE INVOLVEMENT IN SYNAPTIC DYSFUNCTION. JRNL REF PLOS ONE V. 8 66226 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23840427 JRNL DOI 10.1371/JOURNAL.PONE.0066226 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 32278 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1719 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2340 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 126 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2732 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 292 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : -1.14000 REMARK 3 B33 (A**2) : 1.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.131 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.152 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3079 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2088 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4199 ; 1.364 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5091 ; 0.850 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 378 ; 2.982 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 142 ;31.078 ;23.944 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 532 ;10.217 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;17.736 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 456 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3469 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 646 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1818 ; 1.207 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 715 ; 0.379 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2978 ; 2.081 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1261 ; 3.090 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1220 ; 4.711 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 48 REMARK 3 ORIGIN FOR THE GROUP (A): -16.4586 -0.0043 21.4150 REMARK 3 T TENSOR REMARK 3 T11: 0.1303 T22: 0.1286 REMARK 3 T33: 0.1484 T12: -0.0108 REMARK 3 T13: 0.0558 T23: 0.0863 REMARK 3 L TENSOR REMARK 3 L11: 4.4988 L22: 6.4502 REMARK 3 L33: 3.9366 L12: 0.7580 REMARK 3 L13: 0.6805 L23: -1.7441 REMARK 3 S TENSOR REMARK 3 S11: -0.0285 S12: -0.3312 S13: 0.0382 REMARK 3 S21: 0.4991 S22: 0.0887 S23: 0.4995 REMARK 3 S31: -0.4008 S32: -0.2027 S33: -0.0602 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 49 A 120 REMARK 3 ORIGIN FOR THE GROUP (A): -6.3730 4.0594 14.0463 REMARK 3 T TENSOR REMARK 3 T11: 0.0811 T22: 0.0378 REMARK 3 T33: 0.0365 T12: -0.0078 REMARK 3 T13: 0.0071 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 2.2403 L22: 1.9659 REMARK 3 L33: 1.5813 L12: -0.6925 REMARK 3 L13: 0.5042 L23: -1.4015 REMARK 3 S TENSOR REMARK 3 S11: 0.0663 S12: -0.1710 S13: -0.1624 REMARK 3 S21: 0.1450 S22: 0.0703 S23: 0.2417 REMARK 3 S31: -0.1405 S32: -0.1394 S33: -0.1365 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 121 A 167 REMARK 3 ORIGIN FOR THE GROUP (A): 10.7834 -4.0677 18.0745 REMARK 3 T TENSOR REMARK 3 T11: 0.0777 T22: 0.0511 REMARK 3 T33: 0.0355 T12: -0.0032 REMARK 3 T13: 0.0095 T23: 0.0252 REMARK 3 L TENSOR REMARK 3 L11: 2.1673 L22: 2.3808 REMARK 3 L33: 1.5695 L12: 0.4010 REMARK 3 L13: 0.3632 L23: -0.8093 REMARK 3 S TENSOR REMARK 3 S11: 0.0683 S12: -0.0673 S13: -0.1247 REMARK 3 S21: 0.0511 S22: -0.1364 S23: 0.0568 REMARK 3 S31: 0.1219 S32: 0.0543 S33: 0.0680 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 168 A 250 REMARK 3 ORIGIN FOR THE GROUP (A): 20.3209 10.9532 19.1273 REMARK 3 T TENSOR REMARK 3 T11: 0.0390 T22: 0.0790 REMARK 3 T33: 0.0338 T12: -0.0106 REMARK 3 T13: -0.0112 T23: 0.0217 REMARK 3 L TENSOR REMARK 3 L11: 2.4742 L22: 2.9984 REMARK 3 L33: 1.8222 L12: 0.8809 REMARK 3 L13: -0.2513 L23: -0.4912 REMARK 3 S TENSOR REMARK 3 S11: 0.0712 S12: -0.1709 S13: 0.1719 REMARK 3 S21: 0.2093 S22: -0.0627 S23: -0.0244 REMARK 3 S31: -0.0139 S32: 0.0443 S33: -0.0085 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 251 A 324 REMARK 3 ORIGIN FOR THE GROUP (A): 24.4829 1.9365 15.1032 REMARK 3 T TENSOR REMARK 3 T11: 0.1159 T22: 0.1571 REMARK 3 T33: 0.1194 T12: 0.0162 REMARK 3 T13: -0.0033 T23: 0.0572 REMARK 3 L TENSOR REMARK 3 L11: 1.6389 L22: 1.6851 REMARK 3 L33: 0.3134 L12: -0.0765 REMARK 3 L13: -0.1362 L23: -0.3176 REMARK 3 S TENSOR REMARK 3 S11: 0.0204 S12: -0.1545 S13: -0.1136 REMARK 3 S21: 0.0556 S22: -0.1365 S23: -0.4212 REMARK 3 S31: 0.0202 S32: 0.1637 S33: 0.1161 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 325 A 353 REMARK 3 ORIGIN FOR THE GROUP (A): -8.1646 7.9249 2.3606 REMARK 3 T TENSOR REMARK 3 T11: 0.1184 T22: 0.0941 REMARK 3 T33: 0.0222 T12: 0.0324 REMARK 3 T13: -0.0331 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 2.6294 L22: 6.1460 REMARK 3 L33: 3.4774 L12: -1.4879 REMARK 3 L13: 0.2889 L23: -3.5267 REMARK 3 S TENSOR REMARK 3 S11: 0.0451 S12: 0.1256 S13: -0.1027 REMARK 3 S21: -0.3373 S22: -0.0002 S23: 0.2193 REMARK 3 S31: 0.2618 S32: -0.0247 S33: -0.0449 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4F9Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000072640. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34190 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.53700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.810 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M AMMONIUM ACETATE, 0.1 M BIS-TRIS REMARK 280 PH 5.5, 17% PEG 10000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.26450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.13500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.41700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.13500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.26450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.41700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 SER A -15 REMARK 465 SER A -14 REMARK 465 GLY A -13 REMARK 465 VAL A -12 REMARK 465 ASP A -11 REMARK 465 LEU A -10 REMARK 465 GLY A -9 REMARK 465 THR A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 SER A -1 REMARK 465 ASN A 0 REMARK 465 ALA A 1 REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 GLU A 4 REMARK 465 ARG A 173 REMARK 465 HIS A 174 REMARK 465 THR A 175 REMARK 465 ASP A 176 REMARK 465 ASP A 177 REMARK 465 GLU A 178 REMARK 465 MET A 179 REMARK 465 THR A 180 REMARK 465 GLY A 181 REMARK 465 TYR A 182 REMARK 465 ASP A 354 REMARK 465 GLN A 355 REMARK 465 GLU A 356 REMARK 465 GLU A 357 REMARK 465 MET A 358 REMARK 465 GLU A 359 REMARK 465 SER A 360 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 49 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 14 -135.18 64.62 REMARK 500 LYS A 118 91.04 -22.12 REMARK 500 CYS A 119 40.61 -150.63 REMARK 500 ARG A 149 -15.34 80.29 REMARK 500 ASP A 168 64.99 29.81 REMARK 500 LEU A 171 51.40 -101.25 REMARK 500 LEU A 289 55.76 -93.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GG5 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GG5 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LM3 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EWQ RELATED DB: PDB REMARK 900 RELATED ID: 4F9W RELATED DB: PDB REMARK 900 RELATED ID: 4FA2 RELATED DB: PDB DBREF 4F9Y A 2 360 UNP Q16539 MK14_HUMAN 2 360 SEQADV 4F9Y MET A -22 UNP Q16539 EXPRESSION TAG SEQADV 4F9Y HIS A -21 UNP Q16539 EXPRESSION TAG SEQADV 4F9Y HIS A -20 UNP Q16539 EXPRESSION TAG SEQADV 4F9Y HIS A -19 UNP Q16539 EXPRESSION TAG SEQADV 4F9Y HIS A -18 UNP Q16539 EXPRESSION TAG SEQADV 4F9Y HIS A -17 UNP Q16539 EXPRESSION TAG SEQADV 4F9Y HIS A -16 UNP Q16539 EXPRESSION TAG SEQADV 4F9Y SER A -15 UNP Q16539 EXPRESSION TAG SEQADV 4F9Y SER A -14 UNP Q16539 EXPRESSION TAG SEQADV 4F9Y GLY A -13 UNP Q16539 EXPRESSION TAG SEQADV 4F9Y VAL A -12 UNP Q16539 EXPRESSION TAG SEQADV 4F9Y ASP A -11 UNP Q16539 EXPRESSION TAG SEQADV 4F9Y LEU A -10 UNP Q16539 EXPRESSION TAG SEQADV 4F9Y GLY A -9 UNP Q16539 EXPRESSION TAG SEQADV 4F9Y THR A -8 UNP Q16539 EXPRESSION TAG SEQADV 4F9Y GLU A -7 UNP Q16539 EXPRESSION TAG SEQADV 4F9Y ASN A -6 UNP Q16539 EXPRESSION TAG SEQADV 4F9Y LEU A -5 UNP Q16539 EXPRESSION TAG SEQADV 4F9Y TYR A -4 UNP Q16539 EXPRESSION TAG SEQADV 4F9Y PHE A -3 UNP Q16539 EXPRESSION TAG SEQADV 4F9Y GLN A -2 UNP Q16539 EXPRESSION TAG SEQADV 4F9Y SER A -1 UNP Q16539 EXPRESSION TAG SEQADV 4F9Y ASN A 0 UNP Q16539 EXPRESSION TAG SEQADV 4F9Y ALA A 1 UNP Q16539 EXPRESSION TAG SEQRES 1 A 383 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 383 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA SER GLN SEQRES 3 A 383 GLU ARG PRO THR PHE TYR ARG GLN GLU LEU ASN LYS THR SEQRES 4 A 383 ILE TRP GLU VAL PRO GLU ARG TYR GLN ASN LEU SER PRO SEQRES 5 A 383 VAL GLY SER GLY ALA TYR GLY SER VAL CYS ALA ALA PHE SEQRES 6 A 383 ASP THR LYS THR GLY LEU ARG VAL ALA VAL LYS LYS LEU SEQRES 7 A 383 SER ARG PRO PHE GLN SER ILE ILE HIS ALA LYS ARG THR SEQRES 8 A 383 TYR ARG GLU LEU ARG LEU LEU LYS HIS MET LYS HIS GLU SEQRES 9 A 383 ASN VAL ILE GLY LEU LEU ASP VAL PHE THR PRO ALA ARG SEQRES 10 A 383 SER LEU GLU GLU PHE ASN ASP VAL TYR LEU VAL THR HIS SEQRES 11 A 383 LEU MET GLY ALA ASP LEU ASN ASN ILE VAL LYS CYS GLN SEQRES 12 A 383 LYS LEU THR ASP ASP HIS VAL GLN PHE LEU ILE TYR GLN SEQRES 13 A 383 ILE LEU ARG GLY LEU LYS TYR ILE HIS SER ALA ASP ILE SEQRES 14 A 383 ILE HIS ARG ASP LEU LYS PRO SER ASN LEU ALA VAL ASN SEQRES 15 A 383 GLU ASP CYS GLU LEU LYS ILE LEU ASP PHE GLY LEU ALA SEQRES 16 A 383 ARG HIS THR ASP ASP GLU MET THR GLY TYR VAL ALA THR SEQRES 17 A 383 ARG TRP TYR ARG ALA PRO GLU ILE MET LEU ASN TRP MET SEQRES 18 A 383 HIS TYR ASN GLN THR VAL ASP ILE TRP SER VAL GLY CYS SEQRES 19 A 383 ILE MET ALA GLU LEU LEU THR GLY ARG THR LEU PHE PRO SEQRES 20 A 383 GLY THR ASP HIS ILE ASP GLN LEU LYS LEU ILE LEU ARG SEQRES 21 A 383 LEU VAL GLY THR PRO GLY ALA GLU LEU LEU LYS LYS ILE SEQRES 22 A 383 SER SER GLU SER ALA ARG ASN TYR ILE GLN SER LEU THR SEQRES 23 A 383 GLN MET PRO LYS MET ASN PHE ALA ASN VAL PHE ILE GLY SEQRES 24 A 383 ALA ASN PRO LEU ALA VAL ASP LEU LEU GLU LYS MET LEU SEQRES 25 A 383 VAL LEU ASP SER ASP LYS ARG ILE THR ALA ALA GLN ALA SEQRES 26 A 383 LEU ALA HIS ALA TYR PHE ALA GLN TYR HIS ASP PRO ASP SEQRES 27 A 383 ASP GLU PRO VAL ALA ASP PRO TYR ASP GLN SER PHE GLU SEQRES 28 A 383 SER ARG ASP LEU LEU ILE ASP GLU TRP LYS SER LEU THR SEQRES 29 A 383 TYR ASP GLU VAL ILE SER PHE VAL PRO PRO PRO LEU ASP SEQRES 30 A 383 GLN GLU GLU MET GLU SER HET GG5 A 401 18 HET GG5 A 402 18 HET LM3 A 403 25 HET BME A 404 4 HET BME A 405 4 HET PEG A 406 7 HETNAM GG5 4-[3-(4-FLUOROPHENYL)-1H-PYRAZOL-4-YL]PYRIDINE HETNAM LM3 N,N-DIMETHYL-6-(NAPHTHALEN-1-YL)-5-(PYRIDIN-4-YL) HETNAM 2 LM3 PYRIDAZIN-3-AMINE HETNAM BME BETA-MERCAPTOETHANOL HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 2 GG5 2(C14 H10 F N3) FORMUL 4 LM3 C21 H18 N4 FORMUL 5 BME 2(C2 H6 O S) FORMUL 7 PEG C4 H10 O3 FORMUL 8 HOH *292(H2 O) HELIX 1 1 SER A 61 MET A 78 1 18 HELIX 2 2 SER A 95 PHE A 99 5 5 HELIX 3 3 LEU A 113 LYS A 118 1 6 HELIX 4 4 THR A 123 ALA A 144 1 22 HELIX 5 5 LYS A 152 SER A 154 5 3 HELIX 6 6 ALA A 184 ARG A 189 5 6 HELIX 7 7 ALA A 190 LEU A 195 1 6 HELIX 8 8 THR A 203 GLY A 219 1 17 HELIX 9 9 ASP A 227 GLY A 240 1 14 HELIX 10 10 GLY A 243 LYS A 248 1 6 HELIX 11 11 SER A 252 SER A 261 1 10 HELIX 12 12 ASN A 269 PHE A 274 1 6 HELIX 13 13 ASN A 278 LEU A 289 1 12 HELIX 14 14 ASP A 292 ARG A 296 5 5 HELIX 15 15 THR A 298 ALA A 304 1 7 HELIX 16 16 HIS A 305 ALA A 309 5 5 HELIX 17 17 ASP A 313 GLU A 317 5 5 HELIX 18 18 GLN A 325 ARG A 330 5 6 HELIX 19 19 LEU A 333 PHE A 348 1 16 SHEET 1 A 2 PHE A 8 LEU A 13 0 SHEET 2 A 2 THR A 16 PRO A 21 -1 O TRP A 18 N GLN A 11 SHEET 1 B 5 TYR A 24 SER A 32 0 SHEET 2 B 5 GLY A 36 ASP A 43 -1 O ALA A 40 N SER A 28 SHEET 3 B 5 ARG A 49 LEU A 55 -1 O VAL A 52 N CYS A 39 SHEET 4 B 5 TYR A 103 HIS A 107 -1 O LEU A 104 N LYS A 53 SHEET 5 B 5 ASP A 88 PHE A 90 -1 N PHE A 90 O TYR A 103 SHEET 1 C 3 ALA A 111 ASP A 112 0 SHEET 2 C 3 LEU A 156 VAL A 158 -1 O VAL A 158 N ALA A 111 SHEET 3 C 3 LEU A 164 ILE A 166 -1 O LYS A 165 N ALA A 157 LINK SG CYS A 119 S2 BME A 405 1555 1555 2.05 LINK SG CYS A 162 S2 BME A 404 1555 1555 2.05 CISPEP 1 LYS A 118 CYS A 119 0 -3.10 SITE 1 AC1 9 GLU A 192 LEU A 195 TRP A 197 PRO A 242 SITE 2 AC1 9 LYS A 249 ILE A 250 ILE A 259 LEU A 291 SITE 3 AC1 9 SER A 293 SITE 1 AC2 11 GLU A 22 GLN A 25 THR A 44 MET A 194 SITE 2 AC2 11 HIS A 228 ILE A 229 LEU A 232 SER A 254 SITE 3 AC2 11 ALA A 255 TYR A 258 HOH A 701 SITE 1 AC3 13 VAL A 38 ALA A 51 VAL A 52 LYS A 53 SITE 2 AC3 13 ILE A 84 LEU A 104 THR A 106 HIS A 107 SITE 3 AC3 13 MET A 109 ASP A 168 PEG A 406 HOH A 710 SITE 4 AC3 13 HOH A 712 SITE 1 AC4 3 HIS A 126 GLU A 160 CYS A 162 SITE 1 AC5 6 CYS A 119 GLU A 215 GLY A 219 THR A 221 SITE 2 AC5 6 HOH A 743 HOH A 744 SITE 1 AC6 7 VAL A 30 GLY A 33 GLY A 36 VAL A 38 SITE 2 AC6 7 LM3 A 403 HOH A 698 HOH A 778 CRYST1 66.529 74.834 78.270 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015031 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013363 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012776 0.00000