HEADER SIGNALING PROTEIN 22-MAY-12 4FB4 TITLE THE STRUCTURE OF AN ABC-TRANSPORTER FAMILY PROTEIN FROM TITLE 2 RHODOPSEUDOMONAS PALUSTRIS IN COMPLEX WITH CAFFEIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE BRANCHED-CHAIN AMINO ACID TRANSPORT SYSTEM COMPND 3 SUBSTRATE-BINDING PROTEIN; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOPSEUDOMONAS PALUSTRIS; SOURCE 3 ORGANISM_TAXID: 258594; SOURCE 4 STRAIN: CGA009; SOURCE 5 GENE: LIVK, RPA1789; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, ALPHA/BETA, AROMATIC COMPOUND KEYWDS 2 TRANSPORT, AROMATIC COMPOUNDS, SIGNALING PROTEIN, MIDWEST CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, MCSG EXPDTA X-RAY DIFFRACTION AUTHOR M.E.CUFF,J.C.MACK,S.ZERBS,F.COLLART,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 7 09-OCT-24 4FB4 1 REMARK SEQADV LINK REVDAT 6 15-NOV-17 4FB4 1 REMARK REVDAT 5 25-SEP-13 4FB4 1 JRNL REVDAT 4 07-AUG-13 4FB4 1 JRNL REVDAT 3 24-JUL-13 4FB4 1 JRNL REVDAT 2 15-MAY-13 4FB4 1 JRNL REVDAT 1 26-SEP-12 4FB4 0 JRNL AUTH K.TAN,C.CHANG,M.CUFF,J.OSIPIUK,E.LANDORF,J.C.MACK,S.ZERBS, JRNL AUTH 2 A.JOACHIMIAK,F.R.COLLART JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF SOLUTE BINDING JRNL TITL 2 PROTEINS FOR AROMATIC COMPOUNDS DERIVED FROM LIGNIN: JRNL TITL 3 P-COUMARIC ACID AND RELATED AROMATIC ACIDS. JRNL REF PROTEINS V. 81 1709 2013 JRNL REFN ISSN 0887-3585 JRNL PMID 23606130 JRNL DOI 10.1002/PROT.24305 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 3 NUMBER OF REFLECTIONS : 25528 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1290 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1181 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 63.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.1820 REMARK 3 BIN FREE R VALUE SET COUNT : 44 REMARK 3 BIN FREE R VALUE : 0.2420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2699 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 127 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.16000 REMARK 3 B22 (A**2) : 0.66000 REMARK 3 B33 (A**2) : -0.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.152 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.142 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.900 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2774 ; 0.015 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1872 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3766 ; 1.594 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4596 ; 1.036 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 361 ; 5.537 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;32.801 ;24.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 463 ;13.594 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;16.610 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 435 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3091 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 525 ; 0.009 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 385 REMARK 3 ORIGIN FOR THE GROUP (A): 11.9476 60.1327 22.4573 REMARK 3 T TENSOR REMARK 3 T11: 0.0107 T22: 0.0177 REMARK 3 T33: 0.0275 T12: 0.0031 REMARK 3 T13: -0.0044 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.6596 L22: 1.2836 REMARK 3 L33: 0.9563 L12: 0.2270 REMARK 3 L13: 0.1868 L23: 0.5146 REMARK 3 S TENSOR REMARK 3 S11: 0.0185 S12: -0.0627 S13: 0.0147 REMARK 3 S21: 0.0617 S22: 0.0519 S23: -0.1527 REMARK 3 S31: -0.0151 S32: 0.0400 S33: -0.0705 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4FB4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000072680. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27597 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.68400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: MLPHARE, DM 6.1, HKL-3000, SHELXD, SOLVE, RESOLVE, REMARK 200 CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES:NAOH PH 6.5, 30% PEG 4K, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.49300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.50750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.52750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.50750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.49300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.52750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE AUTHOR STATES THAT THE BIOLOGICAL UNIT OF THIS PROTEIN REMARK 300 IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 24 REMARK 465 ASN A 25 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 27 CG CD OE1 OE2 REMARK 470 LYS A 385 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 246 CG HIS A 246 CD2 0.056 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 336 NE - CZ - NH1 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG A 336 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 99 -158.41 -108.37 REMARK 500 ASP A 273 63.37 -150.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DHC A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TX6 RELATED DB: PDB REMARK 900 SAME IN COMPLEX WITH 3,4-HYDOXYPHENYL PYRUVATE REMARK 900 RELATED ID: 4F8J RELATED DB: PDB REMARK 900 SAME IN COMPLEX WITH P-COUMARATE REMARK 900 RELATED ID: MCSG-APC102206 RELATED DB: TARGETTRACK DBREF 4FB4 A 26 385 UNP Q6N8W4 Q6N8W4_RHOPA 26 385 SEQADV 4FB4 SER A 24 UNP Q6N8W4 EXPRESSION TAG SEQADV 4FB4 ASN A 25 UNP Q6N8W4 EXPRESSION TAG SEQRES 1 A 362 SER ASN ALA GLU THR ASN GLU ILE THR ILE GLY ILE THR SEQRES 2 A 362 VAL THR THR THR GLY PRO ALA ALA ALA LEU GLY ILE PRO SEQRES 3 A 362 GLU ARG ASN ALA LEU GLU PHE VAL ALA LYS GLU ILE GLY SEQRES 4 A 362 GLY HIS PRO LEU LYS VAL ILE VAL LEU ASP ASP GLY GLY SEQRES 5 A 362 ASP PRO THR ALA ALA THR THR ASN ALA ARG ARG PHE VAL SEQRES 6 A 362 THR GLU SER LYS ALA ASP VAL ILE MSE GLY SER SER VAL SEQRES 7 A 362 THR PRO PRO THR VAL ALA VAL SER ASN VAL ALA ASN GLU SEQRES 8 A 362 ALA GLN VAL PRO HIS ILE ALA LEU ALA PRO LEU PRO ILE SEQRES 9 A 362 THR PRO GLU ARG ALA LYS TRP SER VAL ALA MSE PRO GLN SEQRES 10 A 362 PRO ILE PRO ILE MSE GLY LYS VAL LEU TYR GLU HIS MSE SEQRES 11 A 362 LYS LYS ASN ASN ILE LYS THR VAL GLY TYR ILE GLY TYR SEQRES 12 A 362 SER ASP SER TYR GLY ASP LEU TRP PHE ASN ASP LEU LYS SEQRES 13 A 362 LYS GLN GLY GLU ALA MSE GLY LEU LYS ILE VAL ALA GLU SEQRES 14 A 362 GLU ARG PHE ALA ARG PRO ASP THR SER VAL ALA GLY GLN SEQRES 15 A 362 VAL LEU LYS LEU VAL ALA ALA ASN PRO ASP ALA ILE LEU SEQRES 16 A 362 VAL GLY ALA SER GLY THR ALA ALA ALA LEU PRO GLN THR SEQRES 17 A 362 SER LEU ARG GLU ARG GLY TYR LYS GLY LEU ILE TYR GLN SEQRES 18 A 362 THR HIS GLY ALA ALA SER MSE ASP PHE ILE ARG ILE ALA SEQRES 19 A 362 GLY LYS SER ALA GLU GLY VAL LEU MSE ALA SER GLY PRO SEQRES 20 A 362 VAL MSE ASP PRO GLU GLY GLN ASP ASP SER ALA LEU THR SEQRES 21 A 362 LYS LYS PRO GLY LEU GLU LEU ASN THR ALA TYR GLU ALA SEQRES 22 A 362 LYS TYR GLY PRO ASN SER ARG SER GLN PHE ALA ALA HIS SEQRES 23 A 362 SER PHE ASP ALA PHE LYS VAL LEU GLU ARG VAL VAL PRO SEQRES 24 A 362 VAL ALA LEU LYS THR ALA LYS PRO GLY THR GLN GLU PHE SEQRES 25 A 362 ARG GLU ALA ILE ARG LYS ALA LEU VAL SER GLU LYS ASP SEQRES 26 A 362 ILE ALA ALA SER GLN GLY VAL TYR SER PHE THR GLU THR SEQRES 27 A 362 ASP ARG TYR GLY LEU ASP ASP ARG SER ARG ILE LEU LEU SEQRES 28 A 362 THR VAL LYS ASP GLY LYS TYR VAL MSE VAL LYS MODRES 4FB4 MSE A 97 MET SELENOMETHIONINE MODRES 4FB4 MSE A 138 MET SELENOMETHIONINE MODRES 4FB4 MSE A 145 MET SELENOMETHIONINE MODRES 4FB4 MSE A 153 MET SELENOMETHIONINE MODRES 4FB4 MSE A 185 MET SELENOMETHIONINE MODRES 4FB4 MSE A 251 MET SELENOMETHIONINE MODRES 4FB4 MSE A 266 MET SELENOMETHIONINE MODRES 4FB4 MSE A 272 MET SELENOMETHIONINE MODRES 4FB4 MSE A 383 MET SELENOMETHIONINE HET MSE A 97 8 HET MSE A 138 8 HET MSE A 145 8 HET MSE A 153 8 HET MSE A 185 8 HET MSE A 251 8 HET MSE A 266 8 HET MSE A 272 8 HET MSE A 383 8 HET DHC A 401 13 HET GOL A 402 6 HETNAM MSE SELENOMETHIONINE HETNAM DHC CAFFEIC ACID HETNAM GOL GLYCEROL HETSYN DHC 3,4-DIHYDROXYCINNAMIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 DHC C9 H8 O4 FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *127(H2 O) HELIX 1 1 ALA A 43 LEU A 54 1 12 HELIX 2 2 GLU A 55 VAL A 57 5 3 HELIX 3 3 ASP A 76 GLU A 90 1 15 HELIX 4 4 VAL A 101 GLN A 116 1 16 HELIX 5 5 THR A 128 LYS A 133 1 6 HELIX 6 6 PRO A 141 ASN A 156 1 16 HELIX 7 7 ASP A 168 MSE A 185 1 18 HELIX 8 8 VAL A 202 ASN A 213 1 12 HELIX 9 9 SER A 222 ARG A 236 1 15 HELIX 10 10 HIS A 246 ALA A 249 5 4 HELIX 11 11 SER A 250 GLY A 258 1 9 HELIX 12 12 LYS A 259 GLU A 262 5 4 HELIX 13 13 GLY A 269 GLN A 277 5 9 HELIX 14 14 THR A 283 GLY A 299 1 17 HELIX 15 15 SER A 304 LYS A 326 1 23 HELIX 16 16 THR A 332 GLU A 346 1 15 HELIX 17 17 ASP A 367 ARG A 371 5 5 SHEET 1 A 6 GLU A 60 ILE A 61 0 SHEET 2 A 6 HIS A 64 ASP A 72 -1 O HIS A 64 N ILE A 61 SHEET 3 A 6 ILE A 31 VAL A 37 1 N ILE A 35 O ILE A 69 SHEET 4 A 6 VAL A 95 GLY A 98 1 O MSE A 97 N GLY A 34 SHEET 5 A 6 HIS A 119 ALA A 121 1 O ILE A 120 N ILE A 96 SHEET 6 A 6 SER A 135 ALA A 137 1 O VAL A 136 N ALA A 121 SHEET 1 B 7 LYS A 188 PHE A 195 0 SHEET 2 B 7 THR A 160 TYR A 166 1 N VAL A 161 O LYS A 188 SHEET 3 B 7 ALA A 216 GLY A 220 1 O GLY A 220 N ILE A 164 SHEET 4 B 7 LEU A 241 GLN A 244 1 O TYR A 243 N ILE A 217 SHEET 5 B 7 LEU A 265 SER A 268 1 O LEU A 265 N GLN A 244 SHEET 6 B 7 ILE A 372 LYS A 377 -1 O LEU A 374 N MSE A 266 SHEET 7 B 7 LYS A 380 MSE A 383 -1 O VAL A 382 N THR A 375 SHEET 1 C 2 ILE A 349 ALA A 350 0 SHEET 2 C 2 VAL A 355 TYR A 356 -1 O TYR A 356 N ILE A 349 LINK C ILE A 96 N MSE A 97 1555 1555 1.31 LINK C MSE A 97 N GLY A 98 1555 1555 1.32 LINK C ALA A 137 N MSE A 138 1555 1555 1.33 LINK C MSE A 138 N PRO A 139 1555 1555 1.37 LINK C ILE A 144 N MSE A 145 1555 1555 1.32 LINK C MSE A 145 N GLY A 146 1555 1555 1.33 LINK C HIS A 152 N MSE A 153 1555 1555 1.32 LINK C MSE A 153 N LYS A 154 1555 1555 1.33 LINK C ALA A 184 N MSE A 185 1555 1555 1.34 LINK C MSE A 185 N GLY A 186 1555 1555 1.33 LINK C SER A 250 N MSE A 251 1555 1555 1.33 LINK C MSE A 251 N ASP A 252 1555 1555 1.33 LINK C LEU A 265 N MSE A 266 1555 1555 1.33 LINK C MSE A 266 N ALA A 267 1555 1555 1.32 LINK C VAL A 271 N MSE A 272 1555 1555 1.32 LINK C MSE A 272 N ASP A 273 1555 1555 1.34 LINK C VAL A 382 N MSE A 383 1555 1555 1.33 LINK C MSE A 383 N VAL A 384 1555 1555 1.33 CISPEP 1 GLY A 98 SER A 99 0 -0.40 SITE 1 AC1 15 LEU A 46 VAL A 101 THR A 102 LEU A 122 SITE 2 AC1 15 PRO A 124 PRO A 139 TYR A 170 ARG A 197 SITE 3 AC1 15 SER A 222 HIS A 246 GLY A 247 GLN A 305 SITE 4 AC1 15 PHE A 306 HIS A 309 HOH A 501 SITE 1 AC2 8 PRO A 42 TYR A 166 ARG A 197 SER A 222 SITE 2 AC2 8 GLY A 223 THR A 224 ALA A 225 HOH A 507 CRYST1 48.986 71.055 91.015 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020414 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014074 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010987 0.00000