HEADER TRANSFERASE, HYDROLASE 23-MAY-12 4FBE TITLE CRYSTAL STRUCTURE OF THE C136A/C164A VARIANT OF MITOCHONDRIAL ISOFORM TITLE 2 OF GLUTAMINYL CYCLASE FROM DROSOPHILA MELANOGASTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: CG5976, ISOFORM B; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 32-354; COMPND 5 SYNONYM: GLUTAMINYL-PEPTIDE CYCLOTRANSFERASE, RE61650P; COMPND 6 EC: 2.3.2.5, 3.4.-.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: ISOQC, CG5976, DMEL_CG5976; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1007065; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: M15; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE31 KEYWDS ALPHA/BETA HYDROLASE, PGLU FORMATION, PE, ALZHEIMER'S DISEASE, KEYWDS 2 PYROGLUTAMATE, PGLU-AMYLOID, TRANSFERASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.KOLENKO,B.KOCH,D.RUIZ-CARILO,M.T.STUBBS REVDAT 3 13-SEP-23 4FBE 1 REMARK SEQADV LINK REVDAT 2 26-SEP-12 4FBE 1 JRNL REVDAT 1 29-AUG-12 4FBE 0 JRNL AUTH B.KOCH,P.KOLENKO,M.BUCHHOLZ,D.RUIZ CARRILLO,C.PARTHIER, JRNL AUTH 2 M.WERMANN,J.U.RAHFELD,G.REUTER,S.SCHILLING,M.T.STUBBS, JRNL AUTH 3 H.U.DEMUTH JRNL TITL CRYSTAL STRUCTURES OF GLUTAMINYL CYCLASES (QCS) FROM JRNL TITL 2 DROSOPHILA MELANOGASTER REVEAL ACTIVE SITE CONSERVATION JRNL TITL 3 BETWEEN INSECT AND MAMMALIAN QCS. JRNL REF BIOCHEMISTRY V. 51 7383 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22897232 JRNL DOI 10.1021/BI300687G REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0116 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 79.7 REMARK 3 NUMBER OF REFLECTIONS : 36763 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1837 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 718 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 20.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.1950 REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4930 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 424 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.06000 REMARK 3 B22 (A**2) : 0.71000 REMARK 3 B33 (A**2) : -1.15000 REMARK 3 B12 (A**2) : 0.40000 REMARK 3 B13 (A**2) : 0.58000 REMARK 3 B23 (A**2) : -0.09000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.213 REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.261 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5127 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3490 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6966 ; 1.392 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8465 ; 0.899 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 604 ; 6.003 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 244 ;35.930 ;23.770 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 871 ;13.957 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;19.816 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 766 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5604 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1043 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4FBE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000072690. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36763 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 71.663 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 79.7 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 28.5 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.34200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4FAI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG4000, 0.2 M MAGNESIUM CHLORIDE, REMARK 280 1 MM PQ50, 0.1 M TRIS-HCL, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 25 REMARK 465 ARG A 26 REMARK 465 GLY A 27 REMARK 465 SER A 28 REMARK 465 THR A 29 REMARK 465 ASP A 30 REMARK 465 PRO A 31 REMARK 465 PHE A 32 REMARK 465 ARG A 266 REMARK 465 TYR A 267 REMARK 465 ALA A 268 REMARK 465 SER A 269 REMARK 465 SER A 270 REMARK 465 GLY A 271 REMARK 465 VAL A 272 REMARK 465 ALA A 273 REMARK 465 GLN A 274 REMARK 465 ARG A 275 REMARK 465 ASP A 276 REMARK 465 PRO A 277 REMARK 465 THR A 278 REMARK 465 ALA A 349 REMARK 465 GLY A 350 REMARK 465 THR A 351 REMARK 465 GLU A 352 REMARK 465 ALA A 353 REMARK 465 LYS A 354 REMARK 465 MET B 25 REMARK 465 ARG B 26 REMARK 465 GLY B 27 REMARK 465 SER B 28 REMARK 465 THR B 29 REMARK 465 ASP B 30 REMARK 465 PRO B 31 REMARK 465 PHE B 32 REMARK 465 LEU B 263 REMARK 465 LEU B 264 REMARK 465 GLU B 265 REMARK 465 ARG B 266 REMARK 465 TYR B 267 REMARK 465 ALA B 268 REMARK 465 SER B 269 REMARK 465 SER B 270 REMARK 465 GLY B 271 REMARK 465 VAL B 272 REMARK 465 ALA B 273 REMARK 465 GLN B 274 REMARK 465 ARG B 275 REMARK 465 ASP B 276 REMARK 465 PRO B 277 REMARK 465 THR B 278 REMARK 465 GLY B 350 REMARK 465 THR B 351 REMARK 465 GLU B 352 REMARK 465 ALA B 353 REMARK 465 LYS B 354 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 257 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 257 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 43 72.44 -156.65 REMARK 500 ASP A 60 78.13 -151.64 REMARK 500 ARG A 75 51.02 -146.74 REMARK 500 ASP A 97 30.18 71.79 REMARK 500 ILE A 111 -68.17 68.78 REMARK 500 PRO A 144 130.88 -38.62 REMARK 500 GLU A 194 -67.60 -122.03 REMARK 500 ASP A 234 57.44 37.22 REMARK 500 SER A 283 52.45 -90.76 REMARK 500 ASN B 43 71.21 -160.38 REMARK 500 SER B 45 132.03 -38.44 REMARK 500 ARG B 75 54.10 -145.88 REMARK 500 ILE B 111 -54.19 73.27 REMARK 500 SER B 201 160.25 168.97 REMARK 500 ASP B 293 -173.04 -171.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR B 131 LEU B 132 149.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 153 OD2 REMARK 620 2 GLU A 191 OE2 104.4 REMARK 620 3 HIS A 318 NE2 104.0 115.7 REMARK 620 4 PBD A 401 NAM 108.9 115.1 108.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 153 OD2 REMARK 620 2 GLU B 191 OE2 103.4 REMARK 620 3 HIS B 318 NE2 101.3 114.3 REMARK 620 4 PBD B 402 NAM 114.1 114.8 108.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PBD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PBD B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4F9U RELATED DB: PDB REMARK 900 RELATED ID: 4F9V RELATED DB: PDB REMARK 900 RELATED ID: 4FAI RELATED DB: PDB DBREF 4FBE A 32 354 UNP Q86PD7 Q86PD7_DROME 32 354 DBREF 4FBE B 32 354 UNP Q86PD7 Q86PD7_DROME 32 354 SEQADV 4FBE MET A 25 UNP Q86PD7 EXPRESSION TAG SEQADV 4FBE ARG A 26 UNP Q86PD7 EXPRESSION TAG SEQADV 4FBE GLY A 27 UNP Q86PD7 EXPRESSION TAG SEQADV 4FBE SER A 28 UNP Q86PD7 EXPRESSION TAG SEQADV 4FBE THR A 29 UNP Q86PD7 EXPRESSION TAG SEQADV 4FBE ASP A 30 UNP Q86PD7 EXPRESSION TAG SEQADV 4FBE PRO A 31 UNP Q86PD7 EXPRESSION TAG SEQADV 4FBE ALA A 136 UNP Q86PD7 CYS 136 ENGINEERED MUTATION SEQADV 4FBE ALA A 158 UNP Q86PD7 CYS 158 ENGINEERED MUTATION SEQADV 4FBE MET B 25 UNP Q86PD7 EXPRESSION TAG SEQADV 4FBE ARG B 26 UNP Q86PD7 EXPRESSION TAG SEQADV 4FBE GLY B 27 UNP Q86PD7 EXPRESSION TAG SEQADV 4FBE SER B 28 UNP Q86PD7 EXPRESSION TAG SEQADV 4FBE THR B 29 UNP Q86PD7 EXPRESSION TAG SEQADV 4FBE ASP B 30 UNP Q86PD7 EXPRESSION TAG SEQADV 4FBE PRO B 31 UNP Q86PD7 EXPRESSION TAG SEQADV 4FBE ALA B 136 UNP Q86PD7 CYS 136 ENGINEERED MUTATION SEQADV 4FBE ALA B 158 UNP Q86PD7 CYS 158 ENGINEERED MUTATION SEQRES 1 A 330 MET ARG GLY SER THR ASP PRO PHE GLU LEU VAL ASP ILE SEQRES 2 A 330 PRO LYS ILE SER TYR ASN PRO SER GLU LEU SER GLU PRO SEQRES 3 A 330 ARG PHE LEU GLU TYR SER ASN LEU SER ASP LYS LEU HIS SEQRES 4 A 330 LEU ARG GLU ALA ILE ASP LYS ILE LEU ILE PRO ARG VAL SEQRES 5 A 330 VAL GLY THR THR ASN HIS SER ILE VAL ARG GLU TYR ILE SEQRES 6 A 330 VAL GLN SER LEU ARG ASP LEU ASP TRP ASP VAL GLU VAL SEQRES 7 A 330 ASN SER PHE HIS ASP HIS ALA PRO ILE LYS GLY LYS LEU SEQRES 8 A 330 HIS PHE HIS ASN ILE ILE ALA THR LEU ASN PRO ASN ALA SEQRES 9 A 330 GLU ARG TYR LEU VAL LEU SER ALA HIS TYR ASP SER LYS SEQRES 10 A 330 TYR MET PRO GLY VAL GLU PHE LEU GLY ALA THR ASP SER SEQRES 11 A 330 ALA VAL PRO ALA ALA MET LEU LEU ASN LEU ALA GLN VAL SEQRES 12 A 330 LEU GLN GLU GLN LEU LYS PRO LEU LYS LYS SER LYS LEU SEQRES 13 A 330 SER LEU MET LEU LEU PHE PHE ASP GLY GLU GLU ALA PHE SEQRES 14 A 330 GLU GLU TRP GLY PRO LYS ASP SER ILE TYR GLY ALA ARG SEQRES 15 A 330 HIS LEU ALA LYS LYS TRP HIS HIS GLU GLY LYS LEU ASP SEQRES 16 A 330 ARG ILE ASP MET LEU VAL LEU LEU ASP LEU LEU GLY ALA SEQRES 17 A 330 PRO ASP PRO ALA PHE TYR SER PHE PHE GLU ASN THR GLU SEQRES 18 A 330 SER TRP TYR MET ARG ILE GLN SER VAL GLU THR ARG LEU SEQRES 19 A 330 ALA LYS LEU GLN LEU LEU GLU ARG TYR ALA SER SER GLY SEQRES 20 A 330 VAL ALA GLN ARG ASP PRO THR ARG TYR PHE GLN SER GLN SEQRES 21 A 330 ALA MET ARG SER SER PHE ILE GLU ASP ASP HIS ILE PRO SEQRES 22 A 330 PHE LEU ARG ARG ASN VAL PRO ILE LEU HIS LEU ILE PRO SEQRES 23 A 330 VAL PRO PHE PRO SER VAL TRP HIS THR PRO ASP ASP ASN SEQRES 24 A 330 ALA SER VAL ILE ASP TYR ALA THR THR ASP ASN LEU ALA SEQRES 25 A 330 LEU ILE ILE ARG LEU PHE ALA LEU GLU TYR LEU LEU ALA SEQRES 26 A 330 GLY THR GLU ALA LYS SEQRES 1 B 330 MET ARG GLY SER THR ASP PRO PHE GLU LEU VAL ASP ILE SEQRES 2 B 330 PRO LYS ILE SER TYR ASN PRO SER GLU LEU SER GLU PRO SEQRES 3 B 330 ARG PHE LEU GLU TYR SER ASN LEU SER ASP LYS LEU HIS SEQRES 4 B 330 LEU ARG GLU ALA ILE ASP LYS ILE LEU ILE PRO ARG VAL SEQRES 5 B 330 VAL GLY THR THR ASN HIS SER ILE VAL ARG GLU TYR ILE SEQRES 6 B 330 VAL GLN SER LEU ARG ASP LEU ASP TRP ASP VAL GLU VAL SEQRES 7 B 330 ASN SER PHE HIS ASP HIS ALA PRO ILE LYS GLY LYS LEU SEQRES 8 B 330 HIS PHE HIS ASN ILE ILE ALA THR LEU ASN PRO ASN ALA SEQRES 9 B 330 GLU ARG TYR LEU VAL LEU SER ALA HIS TYR ASP SER LYS SEQRES 10 B 330 TYR MET PRO GLY VAL GLU PHE LEU GLY ALA THR ASP SER SEQRES 11 B 330 ALA VAL PRO ALA ALA MET LEU LEU ASN LEU ALA GLN VAL SEQRES 12 B 330 LEU GLN GLU GLN LEU LYS PRO LEU LYS LYS SER LYS LEU SEQRES 13 B 330 SER LEU MET LEU LEU PHE PHE ASP GLY GLU GLU ALA PHE SEQRES 14 B 330 GLU GLU TRP GLY PRO LYS ASP SER ILE TYR GLY ALA ARG SEQRES 15 B 330 HIS LEU ALA LYS LYS TRP HIS HIS GLU GLY LYS LEU ASP SEQRES 16 B 330 ARG ILE ASP MET LEU VAL LEU LEU ASP LEU LEU GLY ALA SEQRES 17 B 330 PRO ASP PRO ALA PHE TYR SER PHE PHE GLU ASN THR GLU SEQRES 18 B 330 SER TRP TYR MET ARG ILE GLN SER VAL GLU THR ARG LEU SEQRES 19 B 330 ALA LYS LEU GLN LEU LEU GLU ARG TYR ALA SER SER GLY SEQRES 20 B 330 VAL ALA GLN ARG ASP PRO THR ARG TYR PHE GLN SER GLN SEQRES 21 B 330 ALA MET ARG SER SER PHE ILE GLU ASP ASP HIS ILE PRO SEQRES 22 B 330 PHE LEU ARG ARG ASN VAL PRO ILE LEU HIS LEU ILE PRO SEQRES 23 B 330 VAL PRO PHE PRO SER VAL TRP HIS THR PRO ASP ASP ASN SEQRES 24 B 330 ALA SER VAL ILE ASP TYR ALA THR THR ASP ASN LEU ALA SEQRES 25 B 330 LEU ILE ILE ARG LEU PHE ALA LEU GLU TYR LEU LEU ALA SEQRES 26 B 330 GLY THR GLU ALA LYS HET PBD A 401 22 HET CL A 402 1 HET ZN A 403 1 HET ZN B 401 1 HET PBD B 402 22 HETNAM PBD 1-(3,4-DIMETHOXYPHENYL)-3-[3-(1H-IMIDAZOL-1-YL) HETNAM 2 PBD PROPYL]THIOUREA HETNAM CL CHLORIDE ION HETNAM ZN ZINC ION FORMUL 3 PBD 2(C15 H20 N4 O2 S) FORMUL 4 CL CL 1- FORMUL 5 ZN 2(ZN 2+) FORMUL 8 HOH *424(H2 O) HELIX 1 1 PRO A 38 TYR A 42 5 5 HELIX 2 2 SER A 48 ASN A 57 1 10 HELIX 3 3 ASP A 60 LEU A 72 1 13 HELIX 4 4 THR A 79 LEU A 96 1 18 HELIX 5 5 SER A 154 LEU A 168 1 15 HELIX 6 6 LEU A 168 LYS A 173 1 6 HELIX 7 7 PRO A 174 LYS A 177 5 4 HELIX 8 8 ILE A 202 GLY A 216 1 15 HELIX 9 9 THR A 244 LEU A 261 1 18 HELIX 10 10 HIS A 295 ARG A 301 1 7 HELIX 11 11 ASN A 323 ILE A 327 5 5 HELIX 12 12 ASP A 328 LEU A 348 1 21 HELIX 13 13 PRO B 38 TYR B 42 5 5 HELIX 14 14 SER B 48 ASN B 57 1 10 HELIX 15 15 ASP B 60 LEU B 72 1 13 HELIX 16 16 THR B 79 LEU B 96 1 18 HELIX 17 17 SER B 154 LEU B 168 1 15 HELIX 18 18 LEU B 168 LYS B 173 1 6 HELIX 19 19 PRO B 174 LYS B 177 5 4 HELIX 20 20 ILE B 202 GLU B 215 1 14 HELIX 21 21 PHE B 241 ASN B 243 5 3 HELIX 22 22 THR B 244 GLN B 262 1 19 HELIX 23 23 HIS B 295 ARG B 300 1 6 HELIX 24 24 ASN B 323 ILE B 327 5 5 HELIX 25 25 ASP B 328 LEU B 348 1 21 SHEET 1 A 3 LEU A 34 ASP A 36 0 SHEET 2 A 3 PHE A 281 MET A 286 -1 O ALA A 285 N VAL A 35 SHEET 3 A 3 PHE A 237 SER A 239 1 N SER A 239 O MET A 286 SHEET 1 B 6 ASP A 99 ALA A 109 0 SHEET 2 B 6 GLY A 113 THR A 123 -1 O ILE A 121 N GLU A 101 SHEET 3 B 6 LEU A 180 PHE A 187 -1 O PHE A 186 N ILE A 120 SHEET 4 B 6 ARG A 130 HIS A 137 1 N LEU A 134 O LEU A 185 SHEET 5 B 6 ILE A 221 LEU A 227 1 O VAL A 225 N VAL A 133 SHEET 6 B 6 ILE A 305 LEU A 308 1 O LEU A 308 N LEU A 226 SHEET 1 C 3 LEU B 34 ASP B 36 0 SHEET 2 C 3 PHE B 281 MET B 286 -1 O ALA B 285 N VAL B 35 SHEET 3 C 3 PHE B 237 SER B 239 1 N SER B 239 O MET B 286 SHEET 1 D 6 ASP B 99 ALA B 109 0 SHEET 2 D 6 GLY B 113 THR B 123 -1 O ILE B 121 N GLU B 101 SHEET 3 D 6 LEU B 180 PHE B 187 -1 O PHE B 186 N ILE B 120 SHEET 4 D 6 ARG B 130 HIS B 137 1 N LEU B 134 O LEU B 185 SHEET 5 D 6 ILE B 221 LEU B 227 1 O LEU B 227 N SER B 135 SHEET 6 D 6 ILE B 305 LEU B 308 1 O LEU B 306 N LEU B 226 LINK OD2 ASP A 153 ZN ZN A 403 1555 1555 1.86 LINK OE2 GLU A 191 ZN ZN A 403 1555 1555 1.97 LINK NE2 HIS A 318 ZN ZN A 403 1555 1555 2.12 LINK NAM PBD A 401 ZN ZN A 403 1555 1555 2.13 LINK OD2 ASP B 153 ZN ZN B 401 1555 1555 1.92 LINK OE2 GLU B 191 ZN ZN B 401 1555 1555 1.93 LINK NE2 HIS B 318 ZN ZN B 401 1555 1555 2.10 LINK ZN ZN B 401 NAM PBD B 402 1555 1555 1.98 CISPEP 1 ASP A 153 SER A 154 0 -3.73 CISPEP 2 VAL A 311 PRO A 312 0 -0.17 CISPEP 3 ASP B 153 SER B 154 0 -5.17 CISPEP 4 VAL B 311 PRO B 312 0 8.10 SITE 1 AC1 11 ASP A 153 GLU A 190 GLU A 191 TRP A 196 SITE 2 AC1 11 ASP A 228 GLU A 292 PHE A 313 TRP A 317 SITE 3 AC1 11 HIS A 318 ZN A 403 HOH A 513 SITE 1 AC2 5 ASN A 81 HOH A 618 ASN B 81 GLU B 147 SITE 2 AC2 5 HOH B 588 SITE 1 AC3 4 ASP A 153 GLU A 191 HIS A 318 PBD A 401 SITE 1 AC4 4 ASP B 153 GLU B 191 HIS B 318 PBD B 402 SITE 1 AC5 12 ASP B 153 GLU B 190 GLU B 191 ASP B 228 SITE 2 AC5 12 LEU B 229 GLU B 292 PHE B 313 TRP B 317 SITE 3 AC5 12 HIS B 318 ZN B 401 HOH B 514 HOH B 618 CRYST1 45.928 46.436 74.150 84.93 75.17 74.47 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021773 -0.006052 -0.005639 0.00000 SCALE2 0.000000 0.022351 -0.000474 0.00000 SCALE3 0.000000 0.000000 0.013954 0.00000