HEADER OXIDOREDUCTASE 23-MAY-12 4FBF TITLE CRYSTAL STRUCTURE OF THE SALICYLATE 1,2-DIOXYGENASE FROM TITLE 2 PSEUDOAMINOBACTER SALICYLATOXIDANS W104Y MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENTISATE 1,2-DIOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SALICYLATE 1,2-DIOXYGENASE; COMPND 5 EC: 1.13.11.4; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDAMINOBACTER SALICYLATOXIDANS; SOURCE 3 ORGANISM_TAXID: 93369; SOURCE 4 STRAIN: BN12; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS BETA-SANDWICH, METALLOPROTEIN, DIOXYGENASE, AROMATIC COMPOUND KEYWDS 2 DEGRADATION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.FERRARONI,F.BRIGANTI,I.MATERA REVDAT 3 28-FEB-24 4FBF 1 REMARK SEQADV LINK REVDAT 2 28-NOV-12 4FBF 1 JRNL REVDAT 1 26-SEP-12 4FBF 0 JRNL AUTH M.FERRARONI,L.STEIMER,I.MATERA,S.BURGER,A.SCOZZAFAVA, JRNL AUTH 2 A.STOLZ,F.BRIGANTI JRNL TITL THE GENERATION OF A 1-HYDROXY-2-NAPHTHOATE 1,2-DIOXYGENASE JRNL TITL 2 BY SINGLE POINT MUTATIONS OF SALICYLATE 1,2-DIOXYGENASE - JRNL TITL 3 RATIONAL DESIGN OF MUTANTS AND THE CRYSTAL STRUCTURES OF THE JRNL TITL 4 A85H AND W104Y VARIANTS. JRNL REF J.STRUCT.BIOL. V. 180 563 2012 JRNL REFN ISSN 1047-8477 JRNL PMID 22960182 JRNL DOI 10.1016/J.JSB.2012.08.007 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 15485 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 776 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1081 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2664 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 155 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.31000 REMARK 3 B22 (A**2) : -0.24000 REMARK 3 B33 (A**2) : -2.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.499 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.327 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.246 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.964 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.867 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2740 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3728 ; 1.768 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 336 ; 7.149 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;38.906 ;23.228 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 421 ;20.296 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;17.001 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 396 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2137 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1690 ; 0.732 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2722 ; 1.393 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1050 ; 2.003 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1006 ; 3.315 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4FBF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000072691. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OXFORD DIFFRACTION ENHANCE ULTRA REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.542 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : OXFORD ONYX CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.19 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15486 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 83.637 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : 0.13400 REMARK 200 FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.42200 REMARK 200 R SYM FOR SHELL (I) : 0.42200 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG10000, PH 8.0, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.28500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.98500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 83.63700 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.28500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.98500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 83.63700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.28500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.98500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 83.63700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.28500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.98500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 83.63700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -175.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -87.97000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 -87.97000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 543 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 594 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 ASN A 3 REMARK 465 GLU A 4 REMARK 465 LYS A 5 REMARK 465 LEU A 6 REMARK 465 ASP A 7 REMARK 465 HIS A 8 REMARK 465 GLU A 9 REMARK 465 SER A 10 REMARK 465 VAL A 11 REMARK 465 THR A 12 REMARK 465 GLN A 13 REMARK 465 ALA A 14 REMARK 465 MET A 15 REMARK 465 LEU A 42 REMARK 465 ARG A 79 REMARK 465 GLY A 80 REMARK 465 GLY A 81 REMARK 465 GLU A 82 REMARK 465 GLY A 192 REMARK 465 SER A 193 REMARK 465 ASP A 194 REMARK 465 ARG A 195 REMARK 465 VAL A 196 REMARK 465 THR A 197 REMARK 465 ASP A 198 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 44 CG OD1 OD2 REMARK 470 LYS A 60 CE NZ REMARK 470 ARG A 83 CD NE CZ NH1 NH2 REMARK 470 LYS A 320 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 75 NH1 ARG A 84 2.13 REMARK 500 O HOH A 525 O HOH A 565 2.17 REMARK 500 OG SER A 205 OE2 GLU A 208 2.18 REMARK 500 O HOH A 544 O HOH A 614 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 112 113.71 -31.08 REMARK 500 THR A 154 78.33 -118.03 REMARK 500 ASP A 177 31.94 -92.29 REMARK 500 ASP A 185 60.15 65.21 REMARK 500 CYS A 212 40.95 -91.76 REMARK 500 ALA A 255 -65.86 -171.61 REMARK 500 ALA A 263 141.97 -173.42 REMARK 500 THR A 271 -31.01 -131.30 REMARK 500 ALA A 288 125.69 -36.16 REMARK 500 SER A 331 122.90 -35.09 REMARK 500 GLU A 340 -72.18 -81.91 REMARK 500 THR A 341 -161.29 -77.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 119 NE2 REMARK 620 2 HIS A 121 NE2 103.4 REMARK 620 3 HIS A 160 NE2 86.1 94.1 REMARK 620 4 HOH A 544 O 145.6 92.7 123.4 REMARK 620 5 HOH A 545 O 105.8 150.8 89.8 61.6 REMARK 620 6 HOH A 621 O 87.1 92.3 171.6 61.6 87.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FAG RELATED DB: PDB REMARK 900 RELATED ID: 4FAH RELATED DB: PDB DBREF 4FBF A 1 367 UNP Q67FT0 Q67FT0_9RHIZ 1 367 SEQADV 4FBF TYR A 104 UNP Q67FT0 TRP 104 ENGINEERED MUTATION SEQADV 4FBF MET A 163 UNP Q67FT0 HIS 163 CONFLICT SEQRES 1 A 367 MET GLN ASN GLU LYS LEU ASP HIS GLU SER VAL THR GLN SEQRES 2 A 367 ALA MET GLN PRO LYS ASP THR PRO GLU LEU ARG ALA LEU SEQRES 3 A 367 TYR LYS SER PHE GLU GLU GLU SER ILE ILE PRO LEU TRP SEQRES 4 A 367 THR GLN LEU GLY ASP LEU MET PRO ILE HIS PRO LYS SER SEQRES 5 A 367 LYS ALA VAL PRO HIS VAL TRP LYS TRP SER THR LEU LEU SEQRES 6 A 367 ARG LEU ALA ARG LYS SER GLY GLU LEU VAL PRO VAL GLY SEQRES 7 A 367 ARG GLY GLY GLU ARG ARG ALA LEU GLY LEU ALA ASN PRO SEQRES 8 A 367 GLY LEU GLY GLY ASN ALA TYR ILE SER PRO THR MET TYR SEQRES 9 A 367 ALA GLY ILE GLN TYR LEU GLY PRO ARG GLU THR ALA PRO SEQRES 10 A 367 GLU HIS ARG HIS SER GLN ASN ALA PHE ARG PHE VAL VAL SEQRES 11 A 367 GLU GLY GLU GLY VAL TRP THR VAL VAL ASN GLY ASP PRO SEQRES 12 A 367 VAL ARG MET SER ARG GLY ASP LEU LEU LEU THR PRO GLY SEQRES 13 A 367 TRP CYS PHE HIS GLY HIS MET ASN ASP THR ASP GLN PRO SEQRES 14 A 367 MET ALA TRP ILE ASP GLY LEU ASP ILE PRO PHE SER GLN SEQRES 15 A 367 GLN MET ASP VAL GLY PHE PHE GLU PHE GLY SER ASP ARG SEQRES 16 A 367 VAL THR ASP TYR ALA THR PRO ASN PHE SER ARG GLY GLU SEQRES 17 A 367 ARG LEU TRP CYS HIS PRO GLY LEU ARG PRO LEU SER GLY SEQRES 18 A 367 LEU GLN ASN THR VAL ALA SER PRO ILE GLY ALA TYR ARG SEQRES 19 A 367 TRP GLU PHE THR ASP ARG ALA LEU THR GLU GLN LEU LEU SEQRES 20 A 367 LEU GLU ASP GLU GLY GLN PRO ALA THR VAL ALA PRO GLY SEQRES 21 A 367 HIS ALA ALA ILE ARG TYR VAL ASN PRO THR THR GLY GLY SEQRES 22 A 367 ASP VAL MET PRO THR LEU ARG CYS GLU PHE HIS ARG LEU SEQRES 23 A 367 ARG ALA GLY THR GLU THR ALA THR ARG ASN GLU VAL GLY SEQRES 24 A 367 SER THR VAL PHE GLN VAL PHE GLU GLY ALA GLY ALA VAL SEQRES 25 A 367 VAL MET ASN GLY GLU THR THR LYS LEU GLU LYS GLY ASP SEQRES 26 A 367 MET PHE VAL VAL PRO SER TRP VAL PRO TRP SER LEU GLN SEQRES 27 A 367 ALA GLU THR GLN PHE ASP LEU PHE ARG PHE SER ASP ALA SEQRES 28 A 367 PRO ILE MET GLU ALA LEU SER PHE MET ARG THR LYS ILE SEQRES 29 A 367 GLU GLY GLN HET FE A 401 1 HETNAM FE FE (III) ION FORMUL 2 FE FE 3+ FORMUL 3 HOH *155(H2 O) HELIX 1 1 THR A 20 SER A 34 1 15 HELIX 2 2 PRO A 37 GLN A 41 5 5 HELIX 3 3 LYS A 60 VAL A 75 1 16 HELIX 4 4 ASP A 177 MET A 184 1 8 HELIX 5 5 SER A 205 CYS A 212 1 8 HELIX 6 6 PRO A 218 LEU A 222 5 5 HELIX 7 7 ARG A 234 GLU A 251 1 18 HELIX 8 8 ASP A 350 LEU A 357 1 8 SHEET 1 A 6 HIS A 57 TRP A 59 0 SHEET 2 A 6 MET A 326 VAL A 329 -1 O MET A 326 N TRP A 59 SHEET 3 A 6 THR A 301 GLU A 307 -1 N PHE A 303 O PHE A 327 SHEET 4 A 6 PHE A 343 SER A 349 -1 O PHE A 348 N VAL A 302 SHEET 5 A 6 ARG A 280 LEU A 286 -1 N HIS A 284 O LEU A 345 SHEET 6 A 6 HIS A 261 ARG A 265 -1 N ILE A 264 O PHE A 283 SHEET 1 B 6 ALA A 85 GLY A 87 0 SHEET 2 B 6 TYR A 104 LEU A 110 -1 O ILE A 107 N LEU A 86 SHEET 3 B 6 MET A 170 LEU A 176 -1 O LEU A 176 N TYR A 104 SHEET 4 B 6 ALA A 125 GLU A 131 -1 N PHE A 128 O ILE A 173 SHEET 5 B 6 LEU A 151 THR A 154 -1 O LEU A 152 N ARG A 127 SHEET 6 B 6 ALA A 232 TYR A 233 -1 O TYR A 233 N LEU A 151 SHEET 1 C 5 ASP A 142 SER A 147 0 SHEET 2 C 5 GLU A 133 VAL A 139 -1 N THR A 137 O VAL A 144 SHEET 3 C 5 HIS A 160 ASN A 164 -1 O GLY A 161 N VAL A 138 SHEET 4 C 5 THR A 115 HIS A 121 -1 N HIS A 119 O HIS A 160 SHEET 5 C 5 PHE A 189 GLU A 190 -1 O GLU A 190 N ARG A 120 SHEET 1 D 2 ARG A 295 GLU A 297 0 SHEET 2 D 2 THR A 362 ILE A 364 -1 O LYS A 363 N ASN A 296 SHEET 1 E 3 GLU A 317 LEU A 321 0 SHEET 2 E 3 GLY A 310 MET A 314 -1 N GLY A 310 O LEU A 321 SHEET 3 E 3 TRP A 335 ALA A 339 -1 O GLN A 338 N ALA A 311 LINK NE2 HIS A 119 FE FE A 401 1555 1555 2.24 LINK NE2 HIS A 121 FE FE A 401 1555 1555 2.51 LINK NE2 HIS A 160 FE FE A 401 1555 1555 2.34 LINK FE FE A 401 O HOH A 544 1555 1555 2.39 LINK FE FE A 401 O HOH A 545 1555 1555 2.72 LINK FE FE A 401 O HOH A 621 1555 1555 2.61 SITE 1 AC1 6 HIS A 119 HIS A 121 HIS A 160 HOH A 544 SITE 2 AC1 6 HOH A 545 HOH A 621 CRYST1 74.570 87.970 167.274 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013410 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011368 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005978 0.00000