HEADER HYDROLASE, PROTEIN BINDING 23-MAY-12 4FBQ TITLE CRYSTAL STRUCTURE OF A COVALENTLY FUSED NBS1-MRE11 COMPLEX WITH TWO TITLE 2 MANGANESE IONS PER ACTIVE SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA REPAIR AND TELOMERE MAINTENANCE PROTEIN NBS1,DNA REPAIR COMPND 3 PROTEIN RAD32 CHIMERIC PROTEIN; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: UNP O43070 RESIDUES 474-531, UNP Q09683 RESIDUES 15-413; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 284812; SOURCE 5 STRAIN: 972 / ATCC 24843; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA DOUBLE-STRAND BREAK REPAIR, NUCLEASE, HYDROLASE, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR C.B.SCHILLER,K.LAMMENS,K.P.HOPFNER REVDAT 5 28-FEB-24 4FBQ 1 REMARK SEQADV LINK REVDAT 4 15-NOV-17 4FBQ 1 REMARK REVDAT 3 26-JUL-17 4FBQ 1 SOURCE REMARK REVDAT 2 25-JUL-12 4FBQ 1 JRNL REVDAT 1 20-JUN-12 4FBQ 0 JRNL AUTH C.B.SCHILLER,K.LAMMENS,I.GUERINI,B.COORDES,H.FELDMANN, JRNL AUTH 2 F.SCHLAUDERER,C.MOCKEL,A.SCHELE,K.STRASSER,S.P.JACKSON, JRNL AUTH 3 K.P.HOPFNER JRNL TITL STRUCTURE OF MRE11-NBS1 COMPLEX YIELDS INSIGHTS INTO JRNL TITL 2 ATAXIA-TELANGIECTASIA-LIKE DISEASE MUTATIONS AND DNA DAMAGE JRNL TITL 3 SIGNALING. JRNL REF NAT.STRUCT.MOL.BIOL. V. 19 693 2012 JRNL REFN ISSN 1545-9993 JRNL PMID 22705791 JRNL DOI 10.1038/NSMB.2323 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 36562 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.450 REMARK 3 FREE R VALUE TEST SET COUNT : 1994 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.4185 - 6.0215 0.99 2687 153 0.2110 0.2196 REMARK 3 2 6.0215 - 4.7809 0.98 2524 147 0.1908 0.2119 REMARK 3 3 4.7809 - 4.1770 0.98 2479 146 0.1651 0.2067 REMARK 3 4 4.1770 - 3.7953 0.97 2451 140 0.1886 0.2279 REMARK 3 5 3.7953 - 3.5233 0.98 2446 141 0.2007 0.2671 REMARK 3 6 3.5233 - 3.3157 0.99 2459 143 0.2152 0.2386 REMARK 3 7 3.3157 - 3.1496 0.99 2489 143 0.2271 0.2824 REMARK 3 8 3.1496 - 3.0126 0.99 2443 140 0.2379 0.3060 REMARK 3 9 3.0126 - 2.8966 0.99 2454 142 0.2504 0.3355 REMARK 3 10 2.8966 - 2.7967 0.99 2453 144 0.2595 0.3195 REMARK 3 11 2.7967 - 2.7092 0.98 2417 139 0.2654 0.3551 REMARK 3 12 2.7092 - 2.6318 0.98 2447 138 0.2634 0.3590 REMARK 3 13 2.6318 - 2.5625 0.98 2402 139 0.2821 0.3541 REMARK 3 14 2.5625 - 2.5000 0.97 2417 139 0.2756 0.3499 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 33.63 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.45330 REMARK 3 B22 (A**2) : -2.68400 REMARK 3 B33 (A**2) : 10.13730 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 6773 REMARK 3 ANGLE : 1.133 9182 REMARK 3 CHIRALITY : 0.078 1019 REMARK 3 PLANARITY : 0.004 1198 REMARK 3 DIHEDRAL : 17.036 2536 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -25.4803 2.2085 -30.6351 REMARK 3 T TENSOR REMARK 3 T11: 0.1739 T22: 0.1768 REMARK 3 T33: 0.1653 T12: 0.0150 REMARK 3 T13: -0.0145 T23: -0.0326 REMARK 3 L TENSOR REMARK 3 L11: 0.5113 L22: 0.5802 REMARK 3 L33: 0.5736 L12: 0.0988 REMARK 3 L13: 0.2774 L23: 0.0670 REMARK 3 S TENSOR REMARK 3 S11: 0.0273 S12: -0.0247 S13: -0.0470 REMARK 3 S21: 0.0333 S22: -0.0131 S23: -0.0089 REMARK 3 S31: -0.0279 S32: -0.0580 S33: -0.0055 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4FBQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000072701. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.006 REMARK 200 MONOCHROMATOR : FIXED-EXIT LN2 COOLED DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36665 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.492 REMARK 200 RESOLUTION RANGE LOW (A) : 47.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 400 MM AMMONIUM CITRATE PH 6.0, 20% REMARK 280 PEG 3350, 50 MM MNCL2, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.62800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 111.48400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.51600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 111.48400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.62800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.51600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 GLU A 474 REMARK 465 SER A 475 REMARK 465 GLU A 476 REMARK 465 ILE A 498 REMARK 465 MET A 499 REMARK 465 SER A 500 REMARK 465 SER A 501 REMARK 465 GLU A 502 REMARK 465 LYS A 503 REMARK 465 SER A 504 REMARK 465 ASN A 505 REMARK 465 ALA A 506 REMARK 465 ASN A 507 REMARK 465 SER A 508 REMARK 465 ARG A 509 REMARK 465 HIS A 510 REMARK 465 THR A 511 REMARK 465 SER A 512 REMARK 465 LYS A 513 REMARK 465 TYR A 514 REMARK 465 TYR A 515 REMARK 465 SER A 516 REMARK 465 GLY A 517 REMARK 465 LYS A 527 REMARK 465 ALA A 528 REMARK 465 SER A 529 REMARK 465 GLN A 530 REMARK 465 LYS A 531 REMARK 465 VAL A 532 REMARK 465 ASP A 533 REMARK 465 GLY A 534 REMARK 465 SER A 535 REMARK 465 ALA A 536 REMARK 465 GLY A 537 REMARK 465 SER A 538 REMARK 465 ALA A 539 REMARK 465 GLY A 540 REMARK 465 SER A 1103 REMARK 465 LEU A 1104 REMARK 465 THR A 1105 REMARK 465 THR A 1106 REMARK 465 GLY A 1107 REMARK 465 ASP A 1108 REMARK 465 PRO A 1137 REMARK 465 SER A 1138 REMARK 465 GLY A 1139 REMARK 465 ASP A 1140 REMARK 465 GLY A 1141 REMARK 465 ASP A 1165 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 LEU B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 GLU B 474 REMARK 465 SER B 475 REMARK 465 GLU B 476 REMARK 465 ASP B 477 REMARK 465 ASP B 478 REMARK 465 LYS B 479 REMARK 465 ARG B 497 REMARK 465 ILE B 498 REMARK 465 MET B 499 REMARK 465 SER B 500 REMARK 465 SER B 501 REMARK 465 GLU B 502 REMARK 465 LYS B 503 REMARK 465 SER B 504 REMARK 465 ASN B 505 REMARK 465 ALA B 506 REMARK 465 ASN B 507 REMARK 465 SER B 508 REMARK 465 ARG B 509 REMARK 465 HIS B 510 REMARK 465 THR B 511 REMARK 465 SER B 512 REMARK 465 LYS B 513 REMARK 465 TYR B 514 REMARK 465 TYR B 515 REMARK 465 SER B 516 REMARK 465 GLY B 517 REMARK 465 ARG B 518 REMARK 465 LYS B 519 REMARK 465 ASN B 520 REMARK 465 PHE B 521 REMARK 465 LYS B 522 REMARK 465 LYS B 523 REMARK 465 PHE B 524 REMARK 465 GLN B 525 REMARK 465 LYS B 526 REMARK 465 LYS B 527 REMARK 465 ALA B 528 REMARK 465 SER B 529 REMARK 465 GLN B 530 REMARK 465 LYS B 531 REMARK 465 VAL B 532 REMARK 465 ASP B 533 REMARK 465 GLY B 534 REMARK 465 SER B 535 REMARK 465 ALA B 536 REMARK 465 GLY B 537 REMARK 465 SER B 538 REMARK 465 ALA B 539 REMARK 465 GLY B 540 REMARK 465 SER B 541 REMARK 465 ASP B 1101 REMARK 465 THR B 1102 REMARK 465 SER B 1103 REMARK 465 LEU B 1104 REMARK 465 THR B 1105 REMARK 465 THR B 1106 REMARK 465 GLY B 1107 REMARK 465 ASP B 1108 REMARK 465 THR B 1109 REMARK 465 PRO B 1137 REMARK 465 SER B 1138 REMARK 465 GLY B 1139 REMARK 465 ASP B 1140 REMARK 465 LYS B 1413 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASP A 478 CB CG OD1 OD2 REMARK 480 LYS A 479 CB CG CD CE NZ REMARK 480 GLU A 482 CG CD OE1 OE2 REMARK 480 ARG A 485 CG CD NE CZ NH1 NH2 REMARK 480 ARG A 488 NE CZ NH1 NH2 REMARK 480 ARG A 497 CG CD NE CZ NH1 NH2 REMARK 480 ARG A 518 N O REMARK 480 LYS A 519 CG CD CE NZ REMARK 480 LYS A 523 CD CE NZ REMARK 480 GLN A 525 CD OE1 REMARK 480 ASN A 1070 OD1 ND2 REMARK 480 ARG A 1142 NE CZ NH1 NH2 REMARK 480 ARG A 1190 NH1 NH2 REMARK 480 ARG A 1193 CG CD NE CZ NH1 NH2 REMARK 480 GLU A 1200 OE1 OE2 REMARK 480 LEU A 1210 CG CD1 CD2 REMARK 480 TYR A 1211 CZ OH REMARK 480 ASP A 1213 CG OD1 OD2 REMARK 480 ARG A 1307 NE CZ NH1 NH2 REMARK 480 SER A 1324 CB OG REMARK 480 ILE A 1325 CG1 CG2 CD1 REMARK 480 LYS A 1333 CG CD CE NZ REMARK 480 LYS A 1368 CE NZ REMARK 480 ASN A 1394 CG OD1 ND2 REMARK 480 LYS A 1413 CB CG CD CE NZ REMARK 480 ARG B 485 CD NE CZ NH1 NH2 REMARK 480 ARG B 486 CG CD NE CZ NH1 NH2 REMARK 480 ARG B 488 CZ NH1 NH2 REMARK 480 ILE B 496 CG2 CD1 REMARK 480 GLU B 1163 CB CG CD OE1 OE2 REMARK 480 ASN B 1164 CG OD1 ND2 REMARK 480 ASP B 1165 N CB CG OD1 OD2 REMARK 480 ARG B 1190 CG CD NE CZ NH1 NH2 REMARK 480 ARG B 1193 CD NE CZ NH1 NH2 REMARK 480 HIS B 1196 ND1 CE1 REMARK 480 LYS B 1202 CG CD CE NZ REMARK 480 LYS B 1265 CD CE NZ REMARK 480 LYS B 1297 CG CD CE NZ REMARK 480 LYS B 1332 CE NZ REMARK 480 LYS B 1333 CD CE NZ REMARK 480 GLU B 1344 CD OE1 OE2 REMARK 480 ARG B 1391 CD NE CZ NH1 NH2 REMARK 480 LYS B 1412 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A1032 -34.74 -38.55 REMARK 500 SER A1100 141.47 -178.24 REMARK 500 GLU A1163 -163.78 -105.93 REMARK 500 GLN A1240 137.56 -38.20 REMARK 500 HIS A1250 -47.08 84.06 REMARK 500 LEU A1255 65.46 -108.09 REMARK 500 GLU A1330 89.72 -65.72 REMARK 500 PRO A1362 94.68 -65.49 REMARK 500 ASN A1402 75.46 -109.72 REMARK 500 GLN B1240 128.88 -37.57 REMARK 500 HIS B1250 -50.24 75.14 REMARK 500 LEU B1255 56.05 -119.31 REMARK 500 LYS B1265 32.16 70.86 REMARK 500 LEU B1279 37.29 -94.84 REMARK 500 ASP B1298 -172.22 -67.76 REMARK 500 GLU B1330 89.65 -67.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A1025 OD2 REMARK 620 2 HIS A1027 NE2 106.5 REMARK 620 3 ASP A1065 OD2 86.7 95.1 REMARK 620 4 HIS A1252 NE2 94.3 79.3 174.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A1065 OD2 REMARK 620 2 ASN A1133 OD1 91.0 REMARK 620 3 HIS A1250 ND1 154.2 92.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B1501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B1025 OD1 REMARK 620 2 HIS B1027 NE2 102.9 REMARK 620 3 ASP B1065 OD2 87.6 100.7 REMARK 620 4 HIS B1252 NE2 89.0 78.9 176.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B1502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B1065 OD2 REMARK 620 2 ASN B1133 OD1 98.9 REMARK 620 3 HIS B1222 NE2 85.3 77.2 REMARK 620 4 HIS B1250 ND1 156.6 98.8 83.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 1502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FBK RELATED DB: PDB REMARK 900 RELATED ID: 4FBW RELATED DB: PDB REMARK 900 RELATED ID: 4FCX RELATED DB: PDB DBREF 4FBQ A 474 531 UNP O43070 NBS1_SCHPO 474 531 DBREF 4FBQ A 1015 1413 UNP Q09683 RAD32_SCHPO 15 413 DBREF 4FBQ B 474 531 UNP O43070 NBS1_SCHPO 474 531 DBREF 4FBQ B 1015 1413 UNP Q09683 RAD32_SCHPO 15 413 SEQADV 4FBQ GLY A -4 UNP O43070 EXPRESSION TAG SEQADV 4FBQ PRO A -3 UNP O43070 EXPRESSION TAG SEQADV 4FBQ LEU A -2 UNP O43070 EXPRESSION TAG SEQADV 4FBQ GLY A -1 UNP O43070 EXPRESSION TAG SEQADV 4FBQ SER A 0 UNP O43070 EXPRESSION TAG SEQADV 4FBQ VAL A 532 UNP Q09683 LINKER SEQADV 4FBQ ASP A 533 UNP Q09683 LINKER SEQADV 4FBQ GLY A 534 UNP Q09683 LINKER SEQADV 4FBQ SER A 535 UNP Q09683 LINKER SEQADV 4FBQ ALA A 536 UNP Q09683 LINKER SEQADV 4FBQ GLY A 537 UNP Q09683 LINKER SEQADV 4FBQ SER A 538 UNP Q09683 LINKER SEQADV 4FBQ ALA A 539 UNP Q09683 LINKER SEQADV 4FBQ GLY A 540 UNP Q09683 LINKER SEQADV 4FBQ SER A 541 UNP Q09683 LINKER SEQADV 4FBQ GLY B -4 UNP O43070 EXPRESSION TAG SEQADV 4FBQ PRO B -3 UNP O43070 EXPRESSION TAG SEQADV 4FBQ LEU B -2 UNP O43070 EXPRESSION TAG SEQADV 4FBQ GLY B -1 UNP O43070 EXPRESSION TAG SEQADV 4FBQ SER B 0 UNP O43070 EXPRESSION TAG SEQADV 4FBQ VAL B 532 UNP Q09683 LINKER SEQADV 4FBQ ASP B 533 UNP Q09683 LINKER SEQADV 4FBQ GLY B 534 UNP Q09683 LINKER SEQADV 4FBQ SER B 535 UNP Q09683 LINKER SEQADV 4FBQ ALA B 536 UNP Q09683 LINKER SEQADV 4FBQ GLY B 537 UNP Q09683 LINKER SEQADV 4FBQ SER B 538 UNP Q09683 LINKER SEQADV 4FBQ ALA B 539 UNP Q09683 LINKER SEQADV 4FBQ GLY B 540 UNP Q09683 LINKER SEQADV 4FBQ SER B 541 UNP Q09683 LINKER SEQRES 1 A 472 GLY PRO LEU GLY SER GLU SER GLU ASP ASP LYS ALA PHE SEQRES 2 A 472 GLU GLU ASN ARG ARG LEU ARG ASN LEU GLY SER VAL GLU SEQRES 3 A 472 TYR ILE ARG ILE MET SER SER GLU LYS SER ASN ALA ASN SEQRES 4 A 472 SER ARG HIS THR SER LYS TYR TYR SER GLY ARG LYS ASN SEQRES 5 A 472 PHE LYS LYS PHE GLN LYS LYS ALA SER GLN LYS VAL ASP SEQRES 6 A 472 GLY SER ALA GLY SER ALA GLY SER GLU ASN THR ILE ARG SEQRES 7 A 472 ILE LEU ILE SER SER ASP PRO HIS VAL GLY TYR GLY GLU SEQRES 8 A 472 LYS ASP PRO VAL ARG GLY ASN ASP SER PHE VAL SER PHE SEQRES 9 A 472 ASN GLU ILE LEU GLU ILE ALA ARG GLU ARG ASP VAL ASP SEQRES 10 A 472 MET ILE LEU LEU GLY GLY ASP ILE PHE HIS ASP ASN LYS SEQRES 11 A 472 PRO SER ARG LYS ALA LEU TYR GLN ALA LEU ARG SER LEU SEQRES 12 A 472 ARG LEU ASN CYS LEU GLY ASP LYS PRO CYS GLU LEU GLU SEQRES 13 A 472 LEU LEU SER ASP THR SER LEU THR THR GLY ASP THR ALA SEQRES 14 A 472 VAL CYS ASN ILE ASN TYR LEU ASP PRO ASN ILE ASN VAL SEQRES 15 A 472 ALA ILE PRO VAL PHE SER ILE HIS GLY ASN HIS ASP ASP SEQRES 16 A 472 PRO SER GLY ASP GLY ARG TYR SER ALA LEU ASP ILE LEU SEQRES 17 A 472 GLN VAL THR GLY LEU VAL ASN TYR PHE GLY ARG VAL PRO SEQRES 18 A 472 GLU ASN ASP ASN ILE VAL VAL SER PRO ILE LEU LEU GLN SEQRES 19 A 472 LYS GLY PHE THR LYS LEU ALA LEU TYR GLY ILE SER ASN SEQRES 20 A 472 VAL ARG ASP GLU ARG LEU TYR HIS SER PHE ARG GLU ASN SEQRES 21 A 472 LYS VAL LYS PHE LEU ARG PRO ASP LEU TYR ARG ASP GLU SEQRES 22 A 472 TRP PHE ASN LEU LEU THR VAL HIS GLN ASN HIS SER ALA SEQRES 23 A 472 HIS THR PRO THR SER TYR LEU PRO GLU SER PHE ILE GLN SEQRES 24 A 472 ASP PHE TYR ASP PHE VAL LEU TRP GLY HIS GLU HIS GLU SEQRES 25 A 472 CYS LEU ILE ASP GLY SER TYR ASN PRO THR GLN LYS PHE SEQRES 26 A 472 THR VAL VAL GLN PRO GLY SER THR ILE ALA THR SER LEU SEQRES 27 A 472 SER PRO GLY GLU THR ALA PRO LYS HIS CYS GLY ILE LEU SEQRES 28 A 472 ASN ILE THR GLY LYS ASP PHE HIS LEU GLU LYS ILE ARG SEQRES 29 A 472 LEU ARG THR VAL ARG PRO PHE ILE MET LYS ASP ILE ILE SEQRES 30 A 472 LEU SER GLU VAL SER SER ILE PRO PRO MET VAL GLU ASN SEQRES 31 A 472 LYS LYS GLU VAL LEU THR TYR LEU ILE SER LYS VAL GLU SEQRES 32 A 472 GLU ALA ILE THR GLU ALA ASN ALA GLN TRP TYR GLU ALA SEQRES 33 A 472 GLN GLY THR VAL PRO VAL VAL GLU ASN GLU LYS PRO PRO SEQRES 34 A 472 LEU PRO LEU ILE ARG LEU ARG VAL ASP TYR THR GLY GLY SEQRES 35 A 472 TYR GLN THR GLU ASN PRO GLN ARG PHE SER ASN ARG PHE SEQRES 36 A 472 VAL GLY ARG VAL ALA ASN ALA THR ASP VAL VAL GLN PHE SEQRES 37 A 472 TYR LEU LYS LYS SEQRES 1 B 472 GLY PRO LEU GLY SER GLU SER GLU ASP ASP LYS ALA PHE SEQRES 2 B 472 GLU GLU ASN ARG ARG LEU ARG ASN LEU GLY SER VAL GLU SEQRES 3 B 472 TYR ILE ARG ILE MET SER SER GLU LYS SER ASN ALA ASN SEQRES 4 B 472 SER ARG HIS THR SER LYS TYR TYR SER GLY ARG LYS ASN SEQRES 5 B 472 PHE LYS LYS PHE GLN LYS LYS ALA SER GLN LYS VAL ASP SEQRES 6 B 472 GLY SER ALA GLY SER ALA GLY SER GLU ASN THR ILE ARG SEQRES 7 B 472 ILE LEU ILE SER SER ASP PRO HIS VAL GLY TYR GLY GLU SEQRES 8 B 472 LYS ASP PRO VAL ARG GLY ASN ASP SER PHE VAL SER PHE SEQRES 9 B 472 ASN GLU ILE LEU GLU ILE ALA ARG GLU ARG ASP VAL ASP SEQRES 10 B 472 MET ILE LEU LEU GLY GLY ASP ILE PHE HIS ASP ASN LYS SEQRES 11 B 472 PRO SER ARG LYS ALA LEU TYR GLN ALA LEU ARG SER LEU SEQRES 12 B 472 ARG LEU ASN CYS LEU GLY ASP LYS PRO CYS GLU LEU GLU SEQRES 13 B 472 LEU LEU SER ASP THR SER LEU THR THR GLY ASP THR ALA SEQRES 14 B 472 VAL CYS ASN ILE ASN TYR LEU ASP PRO ASN ILE ASN VAL SEQRES 15 B 472 ALA ILE PRO VAL PHE SER ILE HIS GLY ASN HIS ASP ASP SEQRES 16 B 472 PRO SER GLY ASP GLY ARG TYR SER ALA LEU ASP ILE LEU SEQRES 17 B 472 GLN VAL THR GLY LEU VAL ASN TYR PHE GLY ARG VAL PRO SEQRES 18 B 472 GLU ASN ASP ASN ILE VAL VAL SER PRO ILE LEU LEU GLN SEQRES 19 B 472 LYS GLY PHE THR LYS LEU ALA LEU TYR GLY ILE SER ASN SEQRES 20 B 472 VAL ARG ASP GLU ARG LEU TYR HIS SER PHE ARG GLU ASN SEQRES 21 B 472 LYS VAL LYS PHE LEU ARG PRO ASP LEU TYR ARG ASP GLU SEQRES 22 B 472 TRP PHE ASN LEU LEU THR VAL HIS GLN ASN HIS SER ALA SEQRES 23 B 472 HIS THR PRO THR SER TYR LEU PRO GLU SER PHE ILE GLN SEQRES 24 B 472 ASP PHE TYR ASP PHE VAL LEU TRP GLY HIS GLU HIS GLU SEQRES 25 B 472 CYS LEU ILE ASP GLY SER TYR ASN PRO THR GLN LYS PHE SEQRES 26 B 472 THR VAL VAL GLN PRO GLY SER THR ILE ALA THR SER LEU SEQRES 27 B 472 SER PRO GLY GLU THR ALA PRO LYS HIS CYS GLY ILE LEU SEQRES 28 B 472 ASN ILE THR GLY LYS ASP PHE HIS LEU GLU LYS ILE ARG SEQRES 29 B 472 LEU ARG THR VAL ARG PRO PHE ILE MET LYS ASP ILE ILE SEQRES 30 B 472 LEU SER GLU VAL SER SER ILE PRO PRO MET VAL GLU ASN SEQRES 31 B 472 LYS LYS GLU VAL LEU THR TYR LEU ILE SER LYS VAL GLU SEQRES 32 B 472 GLU ALA ILE THR GLU ALA ASN ALA GLN TRP TYR GLU ALA SEQRES 33 B 472 GLN GLY THR VAL PRO VAL VAL GLU ASN GLU LYS PRO PRO SEQRES 34 B 472 LEU PRO LEU ILE ARG LEU ARG VAL ASP TYR THR GLY GLY SEQRES 35 B 472 TYR GLN THR GLU ASN PRO GLN ARG PHE SER ASN ARG PHE SEQRES 36 B 472 VAL GLY ARG VAL ALA ASN ALA THR ASP VAL VAL GLN PHE SEQRES 37 B 472 TYR LEU LYS LYS HET MN A1501 1 HET MN A1502 1 HET MN B1501 1 HET MN B1502 1 HETNAM MN MANGANESE (II) ION FORMUL 3 MN 4(MN 2+) FORMUL 7 HOH *145(H2 O) HELIX 1 1 LYS A 479 LEU A 487 1 9 HELIX 2 2 ASN A 1039 ARG A 1055 1 17 HELIX 3 3 SER A 1073 LEU A 1089 1 17 HELIX 4 4 ILE A 1114 ASP A 1118 5 5 HELIX 5 5 SER A 1144 THR A 1152 1 9 HELIX 6 6 ARG A 1190 GLU A 1200 1 11 HELIX 7 7 PRO A 1235 ILE A 1239 5 5 HELIX 8 8 SER A 1280 THR A 1284 5 5 HELIX 9 9 SER A 1320 VAL A 1322 5 3 HELIX 10 10 ASN A 1331 GLY A 1359 1 29 HELIX 11 11 ASN A 1388 ASN A 1394 1 7 HELIX 12 12 ARG A 1395 VAL A 1397 5 3 HELIX 13 13 PHE B 481 LEU B 487 1 7 HELIX 14 14 ASN B 1039 ARG B 1055 1 17 HELIX 15 15 SER B 1073 LEU B 1089 1 17 HELIX 16 16 ILE B 1114 ASP B 1118 5 5 HELIX 17 17 SER B 1144 THR B 1152 1 9 HELIX 18 18 ARG B 1190 GLU B 1200 1 11 HELIX 19 19 PRO B 1235 ILE B 1239 5 5 HELIX 20 20 SER B 1280 ALA B 1285 1 6 HELIX 21 21 SER B 1320 VAL B 1322 5 3 HELIX 22 22 ASN B 1331 GLY B 1359 1 29 HELIX 23 23 ASN B 1388 ARG B 1395 1 8 SHEET 1 A 3 SER A 492 ILE A 496 0 SHEET 2 A 3 VAL A1203 PRO A1208 1 O PHE A1205 N SER A 492 SHEET 3 A 3 ILE A1167 VAL A1169 1 N VAL A1169 O LYS A1204 SHEET 1 B 6 ASN A1156 TYR A1157 0 SHEET 2 B 6 VAL A1127 SER A1129 1 N VAL A1127 O ASN A1156 SHEET 3 B 6 MET A1059 LEU A1062 1 N ILE A1060 O PHE A1128 SHEET 4 B 6 THR A1017 SER A1023 1 N LEU A1021 O LEU A1061 SHEET 5 B 6 HIS A1288 THR A1295 -1 O LEU A1292 N ILE A1020 SHEET 6 B 6 ASP A1298 ARG A1305 -1 O ILE A1304 N CYS A1289 SHEET 1 C 7 GLU A1097 ASP A1101 0 SHEET 2 C 7 ILE A1172 LYS A1176 -1 O LEU A1173 N SER A1100 SHEET 3 C 7 THR A1179 ILE A1186 -1 O LEU A1181 N LEU A1174 SHEET 4 C 7 TRP A1215 HIS A1222 1 O PHE A1216 N LYS A1180 SHEET 5 C 7 PHE A1245 GLY A1249 1 O LEU A1247 N LEU A1219 SHEET 6 C 7 PHE A1266 GLN A1270 1 O VAL A1269 N TRP A1248 SHEET 7 C 7 LEU A1255 ASN A1261 -1 N SER A1259 O VAL A1268 SHEET 1 D 3 PHE A1312 ILE A1318 0 SHEET 2 D 3 LEU A1373 ASP A1379 1 O ARG A1377 N ILE A1317 SHEET 3 D 3 VAL A1407 TYR A1410 1 O GLN A1408 N VAL A1378 SHEET 1 E 3 SER B 492 ILE B 496 0 SHEET 2 E 3 VAL B1203 PRO B1208 1 O PHE B1205 N SER B 492 SHEET 3 E 3 ILE B1167 VAL B1169 1 N VAL B1169 O LYS B1204 SHEET 1 F 6 ASN B1156 TYR B1157 0 SHEET 2 F 6 VAL B1127 SER B1129 1 N VAL B1127 O ASN B1156 SHEET 3 F 6 MET B1059 LEU B1062 1 N ILE B1060 O PHE B1128 SHEET 4 F 6 ILE B1018 SER B1023 1 N LEU B1021 O LEU B1061 SHEET 5 F 6 HIS B1288 THR B1295 -1 O GLY B1290 N ILE B1022 SHEET 6 F 6 ASP B1298 ARG B1305 -1 O HIS B1300 N ASN B1293 SHEET 1 G 7 GLU B1097 LEU B1098 0 SHEET 2 G 7 ILE B1172 LYS B1176 -1 O GLN B1175 N GLU B1097 SHEET 3 G 7 THR B1179 ILE B1186 -1 O LEU B1181 N LEU B1174 SHEET 4 G 7 TRP B1215 HIS B1222 1 O LEU B1218 N TYR B1184 SHEET 5 G 7 PHE B1245 GLY B1249 1 O LEU B1247 N VAL B1221 SHEET 6 G 7 PHE B1266 GLN B1270 1 O VAL B1269 N TRP B1248 SHEET 7 G 7 LEU B1255 ASN B1261 -1 N LEU B1255 O GLN B1270 SHEET 1 H 3 PHE B1312 ILE B1318 0 SHEET 2 H 3 LEU B1373 ASP B1379 1 O ASP B1379 N ILE B1317 SHEET 3 H 3 VAL B1407 TYR B1410 1 O GLN B1408 N VAL B1378 LINK OD2 ASP A1025 MN MN A1502 1555 1555 2.11 LINK NE2 HIS A1027 MN MN A1502 1555 1555 2.30 LINK OD2 ASP A1065 MN MN A1501 1555 1555 2.40 LINK OD2 ASP A1065 MN MN A1502 1555 1555 2.47 LINK OD1 ASN A1133 MN MN A1501 1555 1555 1.87 LINK ND1 HIS A1250 MN MN A1501 1555 1555 2.54 LINK NE2 HIS A1252 MN MN A1502 1555 1555 2.53 LINK OD1 ASP B1025 MN MN B1501 1555 1555 2.08 LINK NE2 HIS B1027 MN MN B1501 1555 1555 2.18 LINK OD2 ASP B1065 MN MN B1501 1555 1555 2.40 LINK OD2 ASP B1065 MN MN B1502 1555 1555 2.15 LINK OD1 ASN B1133 MN MN B1502 1555 1555 2.51 LINK NE2 HIS B1222 MN MN B1502 1555 1555 2.43 LINK ND1 HIS B1250 MN MN B1502 1555 1555 2.39 LINK NE2 HIS B1252 MN MN B1501 1555 1555 2.42 CISPEP 1 SER A 1323 SER A 1324 0 11.80 SITE 1 AC1 5 ASP A1065 ASN A1133 HIS A1222 HIS A1250 SITE 2 AC1 5 MN A1502 SITE 1 AC2 5 ASP A1025 HIS A1027 ASP A1065 HIS A1252 SITE 2 AC2 5 MN A1501 SITE 1 AC3 5 ASP B1025 HIS B1027 ASP B1065 HIS B1252 SITE 2 AC3 5 MN B1502 SITE 1 AC4 5 ASP B1065 ASN B1133 HIS B1222 HIS B1250 SITE 2 AC4 5 MN B1501 CRYST1 59.256 79.032 222.968 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016876 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012653 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004485 0.00000