HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 29-MAY-12 4FDW TITLE CRYSTAL STRUCTURE OF A PUTATIVE CELL SURFACE PROTEIN (BACOVA_01565) TITLE 2 FROM BACTEROIDES OVATUS ATCC 8483 AT 2.05 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUCINE RICH HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES OVATUS; SOURCE 3 ORGANISM_TAXID: 411476; SOURCE 4 STRAIN: ATCC 8483; SOURCE 5 GENE: BACOVA_01565; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE CELL SURFACE PROTEIN, BIG3 DOMAIN, LRR DOMAIN, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-BIOLOGY, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 06-DEC-23 4FDW 1 REMARK REVDAT 6 20-SEP-23 4FDW 1 REMARK REVDAT 5 01-FEB-23 4FDW 1 REMARK SEQADV LINK REVDAT 4 24-JAN-18 4FDW 1 JRNL REVDAT 3 15-NOV-17 4FDW 1 REMARK REVDAT 2 24-DEC-14 4FDW 1 TITLE REVDAT 1 25-JUL-12 4FDW 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A LEUCINE RICH HYPOTHETICAL PROTEIN JRNL TITL 2 (BACOVA_01565) FROM BACTEROIDES OVATUS ATCC 8483 AT 2.05 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 31459 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1584 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 16 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.12 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.12 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2840 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2260 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2679 REMARK 3 BIN R VALUE (WORKING SET) : 0.2257 REMARK 3 BIN FREE R VALUE : 0.2310 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.67 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 161 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2973 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 10.45940 REMARK 3 B22 (A**2) : 1.08210 REMARK 3 B33 (A**2) : -11.54150 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.251 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3102 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4231 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1469 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 86 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 453 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3102 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 9 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 433 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3782 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.14 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.62 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.78 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|48 - 126} REMARK 3 ORIGIN FOR THE GROUP (A): 5.7127 -41.9667 67.1379 REMARK 3 T TENSOR REMARK 3 T11: -0.0661 T22: -0.0727 REMARK 3 T33: 0.0287 T12: -0.0041 REMARK 3 T13: -0.0327 T23: 0.0601 REMARK 3 L TENSOR REMARK 3 L11: 4.6049 L22: 1.3193 REMARK 3 L33: 3.2948 L12: 1.2510 REMARK 3 L13: -2.9104 L23: -1.4857 REMARK 3 S TENSOR REMARK 3 S11: 0.0265 S12: 0.0338 S13: 0.0782 REMARK 3 S21: -0.1938 S22: 0.0573 S23: 0.1774 REMARK 3 S31: 0.2290 S32: -0.1993 S33: -0.0838 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|127 - 428} REMARK 3 ORIGIN FOR THE GROUP (A): 14.1709 -1.7467 37.5767 REMARK 3 T TENSOR REMARK 3 T11: -0.0919 T22: -0.0591 REMARK 3 T33: -0.0136 T12: -0.0270 REMARK 3 T13: 0.0099 T23: -0.0160 REMARK 3 L TENSOR REMARK 3 L11: 0.4152 L22: 1.6165 REMARK 3 L33: 1.0555 L12: -0.0708 REMARK 3 L13: 0.0171 L23: -0.8885 REMARK 3 S TENSOR REMARK 3 S11: 0.0415 S12: 0.0355 S13: -0.0328 REMARK 3 S21: 0.0051 S22: -0.0490 S23: 0.0501 REMARK 3 S31: -0.0519 S32: 0.1915 S33: 0.0075 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 3. CD AND CL MODELED WERE PRESENT IN THE REMARK 3 CRYSTALLIZATION CONDITION. REMARK 4 REMARK 4 4FDW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000072778. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : RHODIUM-COATED VERTICAL AND REMARK 200 HORIZONTAL FOCUSING MIRRORS; REMARK 200 LIQUID-NITROGEN COOLED DOUBLE REMARK 200 CRYSTAL SI(111) MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE DECEMBER 29, 2011 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31501 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 45.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.59600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: PDB ENTRY 4FD0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CADMIUM CHLORIDE, 30.0% REMARK 280 POLYETHYLENE GLYCOL 400, 0.1M SODIUM ACETATE PH 4.6, NANODROP, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 39.57000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.16000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.57000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.16000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ASN A 29 REMARK 465 ASP A 30 REMARK 465 GLU A 31 REMARK 465 TYR A 32 REMARK 465 LYS A 33 REMARK 465 LYS A 34 REMARK 465 ASP A 35 REMARK 465 SER A 36 REMARK 465 PRO A 37 REMARK 465 SER A 38 REMARK 465 ALA A 39 REMARK 465 ALA A 40 REMARK 465 ASN A 41 REMARK 465 PRO A 42 REMARK 465 VAL A 43 REMARK 465 GLU A 44 REMARK 465 PRO A 45 REMARK 465 ILE A 46 REMARK 465 GLY A 47 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 210 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD CD A 505 O HOH A 646 3557 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 161 19.89 56.52 REMARK 500 SER A 367 51.36 39.30 REMARK 500 ASN A 371 56.34 -92.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 502 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 52 OD2 REMARK 620 2 HOH A 676 O 77.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 511 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 54 OG REMARK 620 2 HOH A 601 O 86.5 REMARK 620 3 HOH A 693 O 78.0 97.8 REMARK 620 4 HOH A 721 O 95.9 83.4 173.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 503 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 56 OE1 REMARK 620 2 GLU A 56 OE2 52.0 REMARK 620 3 HOH A 601 O 150.8 104.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 501 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 82 OD1 REMARK 620 2 ASP A 82 OD2 55.6 REMARK 620 3 HOH A 609 O 80.1 102.2 REMARK 620 4 HOH A 615 O 97.8 75.4 177.5 REMARK 620 5 HOH A 781 O 137.9 87.8 89.8 90.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 513 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 106 OD1 REMARK 620 2 HOH A 683 O 105.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 509 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 178 OD2 REMARK 620 2 ASP A 178 OD1 52.6 REMARK 620 3 HOH A 650 O 76.6 107.9 REMARK 620 4 HOH A 687 O 138.0 90.3 101.7 REMARK 620 5 HOH A 719 O 85.2 71.9 155.7 102.6 REMARK 620 6 HOH A 779 O 90.8 126.7 96.6 130.6 67.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 506 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 313 OD1 REMARK 620 2 GLU A 315 OE1 111.4 REMARK 620 3 HOH A 604 O 85.9 91.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 505 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 315 OE2 REMARK 620 2 GLU A 315 OE1 55.1 REMARK 620 3 HOH A 700 O 93.0 86.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 507 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 336 OE2 REMARK 620 2 GLU A 336 OE1 53.6 REMARK 620 3 GLU A 380 OE1 149.7 138.7 REMARK 620 4 HOH A 668 O 81.1 106.8 68.9 REMARK 620 5 HOH A 686 O 134.7 81.1 67.7 118.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 504 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 367 OG REMARK 620 2 SER A 367 O 83.6 REMARK 620 3 ASN A 370 OD1 70.2 91.3 REMARK 620 4 HOH A 603 O 97.7 84.9 167.7 REMARK 620 5 HOH A 605 O 82.7 166.2 85.0 96.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 515 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 410 OE2 REMARK 620 2 HOH A 838 O 105.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 516 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 517 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 518 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 519 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 520 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-423563 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 4FD0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A LEUCINE RICH HYPOTHETICAL PROTEIN (BACCAC_ REMARK 900 03700) FROM BACTEROIDES CACCAE ATCC 43185 AT 2.07 A RESOLUTION - REMARK 900 ORTHOLOG' 'ORTHOLOG STRUCTURE FROM BACTEROIDES CACCAE REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (RESIDUES 29-428) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 4FDW A 29 428 UNP A7LUR6 A7LUR6_BACOV 29 428 SEQADV 4FDW GLY A 0 UNP A7LUR6 EXPRESSION TAG SEQRES 1 A 401 GLY ASN ASP GLU TYR LYS LYS ASP SER PRO SER ALA ALA SEQRES 2 A 401 ASN PRO VAL GLU PRO ILE GLY ALA SER LEU GLU ASP PHE SEQRES 3 A 401 SER ILE GLU GLN LEU PRO ALA LYS THR ILE TYR ALA LEU SEQRES 4 A 401 GLY GLU ASN ILE ASP LEU THR GLY LEU ASN VAL THR GLY SEQRES 5 A 401 LYS TYR ASP ASP GLY LYS GLN ARG PRO VAL LYS VAL THR SEQRES 6 A 401 SER GLU GLN ILE SER GLY PHE SER SER SER VAL PRO VAL SEQRES 7 A 401 ASP LYS GLN GLU VAL THR ILE THR ILE GLU GLY LYS GLN SEQRES 8 A 401 LYS SER PHE SER VAL HIS ILE SER PRO VAL ARG VAL GLU SEQRES 9 A 401 ASN GLY VAL LEU THR GLU ILE LEU LYS GLY TYR ASN GLU SEQRES 10 A 401 ILE ILE LEU PRO ASN SER VAL LYS SER ILE PRO LYS ASP SEQRES 11 A 401 ALA PHE ARG ASN SER GLN ILE ALA LYS VAL VAL LEU ASN SEQRES 12 A 401 GLU GLY LEU LYS SER ILE GLY ASP MSE ALA PHE PHE ASN SEQRES 13 A 401 SER THR VAL GLN GLU ILE VAL PHE PRO SER THR LEU GLU SEQRES 14 A 401 GLN LEU LYS GLU ASP ILE PHE TYR TYR CYS TYR ASN LEU SEQRES 15 A 401 LYS LYS ALA ASP LEU SER LYS THR LYS ILE THR LYS LEU SEQRES 16 A 401 PRO ALA SER THR PHE VAL TYR ALA GLY ILE GLU GLU VAL SEQRES 17 A 401 LEU LEU PRO VAL THR LEU LYS GLU ILE GLY SER GLN ALA SEQRES 18 A 401 PHE LEU LYS THR SER GLN LEU LYS THR ILE GLU ILE PRO SEQRES 19 A 401 GLU ASN VAL SER THR ILE GLY GLN GLU ALA PHE ARG GLU SEQRES 20 A 401 SER GLY ILE THR THR VAL LYS LEU PRO ASN GLY VAL THR SEQRES 21 A 401 ASN ILE ALA SER ARG ALA PHE TYR TYR CYS PRO GLU LEU SEQRES 22 A 401 ALA GLU VAL THR THR TYR GLY SER THR PHE ASN ASP ASP SEQRES 23 A 401 PRO GLU ALA MSE ILE HIS PRO TYR CYS LEU GLU GLY CYS SEQRES 24 A 401 PRO LYS LEU ALA ARG PHE GLU ILE PRO GLU SER ILE ARG SEQRES 25 A 401 ILE LEU GLY GLN GLY LEU LEU GLY GLY ASN ARG LYS VAL SEQRES 26 A 401 THR GLN LEU THR ILE PRO ALA ASN VAL THR GLN ILE ASN SEQRES 27 A 401 PHE SER ALA PHE ASN ASN THR GLY ILE LYS GLU VAL LYS SEQRES 28 A 401 VAL GLU GLY THR THR PRO PRO GLN VAL PHE GLU LYS VAL SEQRES 29 A 401 TRP TYR GLY PHE PRO ASP ASP ILE THR VAL ILE ARG VAL SEQRES 30 A 401 PRO ALA GLU SER VAL GLU LYS TYR LYS ASN ALA ASN GLY SEQRES 31 A 401 TRP ARG ASP PHE THR ASN LYS ILE THR THR PHE MODRES 4FDW MSE A 179 MET SELENOMETHIONINE MODRES 4FDW MSE A 317 MET SELENOMETHIONINE HET MSE A 179 8 HET MSE A 317 8 HET CD A 501 1 HET CD A 502 1 HET CD A 503 1 HET CD A 504 1 HET CD A 505 1 HET CD A 506 1 HET CD A 507 1 HET CD A 508 1 HET CD A 509 1 HET CD A 510 1 HET CD A 511 1 HET CD A 512 1 HET CD A 513 1 HET CD A 514 1 HET CD A 515 1 HET CL A 516 1 HET CL A 517 1 HET CL A 518 1 HET CL A 519 1 HET CL A 520 1 HETNAM MSE SELENOMETHIONINE HETNAM CD CADMIUM ION HETNAM CL CHLORIDE ION FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 CD 15(CD 2+) FORMUL 17 CL 5(CL 1-) FORMUL 22 HOH *260(H2 O) HELIX 1 1 THR A 92 GLU A 94 5 3 HELIX 2 2 PRO A 405 GLU A 407 5 3 HELIX 3 3 SER A 408 ALA A 415 1 8 HELIX 4 4 GLY A 417 ASN A 423 5 7 SHEET 1 A 3 LEU A 50 GLN A 57 0 SHEET 2 A 3 ASN A 76 TYR A 81 -1 O LYS A 80 N ASP A 52 SHEET 3 A 3 GLN A 86 PRO A 88 -1 O ARG A 87 N GLY A 79 SHEET 1 B 4 ILE A 63 ALA A 65 0 SHEET 2 B 4 LYS A 117 SER A 126 1 O HIS A 124 N TYR A 64 SHEET 3 B 4 VAL A 105 ILE A 114 -1 N ILE A 112 O LYS A 119 SHEET 4 B 4 ILE A 96 SER A 97 -1 N SER A 97 O THR A 111 SHEET 1 C 2 VAL A 128 GLU A 131 0 SHEET 2 C 2 VAL A 134 ILE A 138 -1 O VAL A 134 N GLU A 131 SHEET 1 D 3 GLU A 144 ILE A 146 0 SHEET 2 D 3 LYS A 166 VAL A 168 1 O VAL A 168 N ILE A 145 SHEET 3 D 3 GLU A 188 VAL A 190 1 O VAL A 190 N VAL A 167 SHEET 1 E 3 SER A 153 ILE A 154 0 SHEET 2 E 3 SER A 175 ILE A 176 1 O SER A 175 N ILE A 154 SHEET 3 E 3 GLN A 197 LEU A 198 1 O GLN A 197 N ILE A 176 SHEET 1 F 2 LYS A 211 ASP A 213 0 SHEET 2 F 2 GLU A 234 LEU A 236 1 O LEU A 236 N ALA A 212 SHEET 1 G 7 LYS A 221 LEU A 222 0 SHEET 2 G 7 GLU A 243 ILE A 244 1 O GLU A 243 N LEU A 222 SHEET 3 G 7 THR A 266 ILE A 267 1 O THR A 266 N ILE A 244 SHEET 4 G 7 ASN A 288 ILE A 289 1 O ASN A 288 N ILE A 267 SHEET 5 G 7 MSE A 317 ILE A 318 1 O MSE A 317 N ILE A 289 SHEET 6 G 7 ILE A 340 LEU A 341 1 O ILE A 340 N ILE A 318 SHEET 7 G 7 GLN A 363 ILE A 364 1 O GLN A 363 N LEU A 341 SHEET 1 H 4 ILE A 258 GLU A 259 0 SHEET 2 H 4 THR A 279 PRO A 283 1 O LYS A 281 N ILE A 258 SHEET 3 H 4 GLU A 302 TYR A 306 1 O THR A 304 N LEU A 282 SHEET 4 H 4 ARG A 331 PHE A 332 1 O ARG A 331 N VAL A 303 SHEET 1 I 4 GLN A 354 ILE A 357 0 SHEET 2 I 4 GLU A 376 VAL A 379 1 O LYS A 378 N ILE A 357 SHEET 3 I 4 VAL A 401 VAL A 404 1 O ARG A 403 N VAL A 377 SHEET 4 I 4 ILE A 425 THR A 427 1 O THR A 426 N ILE A 402 LINK C ASP A 178 N MSE A 179 1555 1555 1.35 LINK C MSE A 179 N ALA A 180 1555 1555 1.36 LINK C ALA A 316 N MSE A 317 1555 1555 1.34 LINK C MSE A 317 N ILE A 318 1555 1555 1.35 LINK OD2 ASP A 52 CD CD A 502 1555 1555 2.33 LINK OG SER A 54 CD CD A 511 1555 1555 2.18 LINK OE1 GLU A 56 CD CD A 503 1555 1555 2.47 LINK OE2 GLU A 56 CD CD A 503 1555 1555 2.56 LINK OD1 ASP A 82 CD CD A 501 1555 1555 2.36 LINK OD2 ASP A 82 CD CD A 501 1555 1555 2.36 LINK OD1 ASP A 106 CD CD A 513 1555 1555 2.45 LINK OD2 ASP A 178 CD CD A 509 1555 1555 2.16 LINK OD1 ASP A 178 CD CD A 509 1555 1555 2.69 LINK OE1 GLU A 188 CD CD A 512 1555 1555 2.51 LINK OE1 GLU A 233 CD CD A 510 1555 1555 2.57 LINK OD1 ASP A 313 CD CD A 506 1555 1555 2.44 LINK OE2 GLU A 315 CD CD A 505 1555 1555 2.29 LINK OE1 GLU A 315 CD CD A 505 1555 1555 2.45 LINK OE1 GLU A 315 CD CD A 506 1555 1555 2.41 LINK OE2 GLU A 336 CD CD A 507 1555 1555 2.30 LINK OE1 GLU A 336 CD CD A 507 1555 1555 2.56 LINK OG BSER A 367 CD CD A 504 1555 1555 2.38 LINK O SER A 367 CD CD A 504 1555 1555 2.43 LINK OD1 ASN A 370 CD CD A 504 1555 1555 2.29 LINK OE1 GLU A 380 CD CD A 507 1555 1555 2.58 LINK OE2 GLU A 380 CD CD A 508 1555 1555 2.36 LINK OE2 GLU A 410 CD CD A 515 1555 1555 2.37 LINK CD CD A 501 O HOH A 609 1555 1555 2.14 LINK CD CD A 501 O HOH A 615 1555 1555 2.11 LINK CD CD A 501 O HOH A 781 1555 1555 2.54 LINK CD CD A 502 O HOH A 676 1555 1555 2.42 LINK CD CD A 503 O HOH A 601 1555 1555 2.02 LINK CD CD A 504 O HOH A 603 1555 1555 2.42 LINK CD CD A 504 O HOH A 605 1555 1555 2.65 LINK CD CD A 505 O HOH A 700 1555 1555 2.63 LINK CD CD A 506 O HOH A 604 1555 1555 2.51 LINK CD CD A 507 O HOH A 668 1555 1555 2.19 LINK CD CD A 507 O HOH A 686 1555 1555 2.13 LINK CD CD A 509 O HOH A 650 1555 1555 2.18 LINK CD CD A 509 O HOH A 687 1555 1555 2.53 LINK CD CD A 509 O HOH A 719 1555 1555 2.24 LINK CD CD A 509 O HOH A 779 1555 1555 2.66 LINK CD CD A 511 O HOH A 601 1555 1555 2.59 LINK CD CD A 511 O HOH A 693 1555 1555 2.66 LINK CD CD A 511 O HOH A 721 1555 1555 2.59 LINK CD CD A 513 O HOH A 683 1555 1555 2.64 LINK CD CD A 514 O HOH A 735 1555 1555 2.45 LINK CD CD A 515 O HOH A 838 1555 1555 2.70 SITE 1 AC1 5 ASP A 82 GLU A 270 HOH A 609 HOH A 615 SITE 2 AC1 5 HOH A 781 SITE 1 AC2 5 ASP A 52 LYS A 119 GLU A 200 HOH A 676 SITE 2 AC2 5 HOH A 719 SITE 1 AC3 5 GLU A 56 ASP A 157 ARG A 160 MSE A 179 SITE 2 AC3 5 HOH A 601 SITE 1 AC4 5 SER A 367 ASN A 370 CL A 518 HOH A 603 SITE 2 AC4 5 HOH A 605 SITE 1 AC5 5 PHE A 99 GLU A 315 HOH A 602 HOH A 646 SITE 2 AC5 5 HOH A 700 SITE 1 AC6 4 ASP A 313 GLU A 315 HOH A 604 HOH A 679 SITE 1 AC7 5 GLU A 336 GLU A 380 HOH A 668 HOH A 672 SITE 2 AC7 5 HOH A 686 SITE 1 AC8 4 GLU A 234 GLU A 380 HOH A 672 HOH A 788 SITE 1 AC9 5 ASP A 178 HOH A 650 HOH A 687 HOH A 719 SITE 2 AC9 5 HOH A 779 SITE 1 BC1 2 GLU A 233 PHE A 428 SITE 1 BC2 6 SER A 54 HOH A 601 HOH A 634 HOH A 693 SITE 2 BC2 6 HOH A 721 HOH A 816 SITE 1 BC3 3 GLU A 188 HOH A 760 HOH A 790 SITE 1 BC4 4 ASP A 106 CL A 517 HOH A 683 HOH A 853 SITE 1 BC5 3 HOH A 603 HOH A 605 HOH A 735 SITE 1 BC6 3 GLU A 410 HOH A 805 HOH A 838 SITE 1 BC7 5 HIS A 124 SER A 126 PRO A 127 ILE A 145 SITE 2 BC7 5 ILE A 146 SITE 1 BC8 4 ASN A 143 GLU A 144 CD A 513 HOH A 853 SITE 1 BC9 6 GLY A 344 SER A 367 ASN A 370 ASN A 371 SITE 2 BC9 6 CD A 504 HOH A 606 SITE 1 CC1 6 LYS A 221 ALA A 224 GLY A 245 SER A 246 SITE 2 CC1 6 HOH A 750 HOH A 833 SITE 1 CC2 1 ASP A 312 CRYST1 79.140 112.320 55.990 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012636 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008903 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017860 0.00000