HEADER OXIDOREDUCTASE 30-MAY-12 4FEE TITLE HIGH-RESOLUTION STRUCTURE OF PYRUVATE OXIDASE IN COMPLEX WITH REACTION TITLE 2 INTERMEDIATE 2-HYDROXYETHYL-THIAMIN DIPHOSPHATE CARBANION-ENAMINE, TITLE 3 CRYSTAL B COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRUVATE OXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.2.3.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS PLANTARUM; SOURCE 3 ORGANISM_TAXID: 644042; SOURCE 4 STRAIN: JDM1; SOURCE 5 GENE: POX5, JDM1_2870; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CARBANION, STRUCTURE ACTIVITY RELATIONSHIP, OXIDATION-REDUCTION, KEYWDS 2 UMPOLUNG, THIAMINE DIPHOSPHATE, REACTION INTERMEDIATE, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.MEYER,P.NEUMANN,E.KOERS,H.SJUTS,S.LUEDTKE,G.M.SHELDRICK,R.FICNER, AUTHOR 2 K.TITTMANN REVDAT 5 15-NOV-23 4FEE 1 ATOM REVDAT 4 13-SEP-23 4FEE 1 REMARK LINK REVDAT 3 25-JUL-12 4FEE 1 JRNL REVDAT 2 11-JUL-12 4FEE 1 JRNL REVDAT 1 20-JUN-12 4FEE 0 JRNL AUTH D.MEYER,P.NEUMANN,E.KOERS,H.SJUTS,S.LUDTKE,G.M.SHELDRICK, JRNL AUTH 2 R.FICNER,K.TITTMANN JRNL TITL UNEXPECTED TAUTOMERIC EQUILIBRIA OF THE CARBANION-ENAMINE JRNL TITL 2 INTERMEDIATE IN PYRUVATE OXIDASE HIGHLIGHT UNRECOGNIZED JRNL TITL 3 CHEMICAL VERSATILITY OF THIAMIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 10867 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22730460 JRNL DOI 10.1073/PNAS.1201280109 REMARK 2 REMARK 2 RESOLUTION. 1.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELX REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.123 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : 0.149 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 11565 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 549376 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.098 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.123 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 413612 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9032 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 236 REMARK 3 SOLVENT ATOMS : 1671 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 10549 REMARK 3 NUMBER OF RESTRAINTS : 12482 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 ANGLE DISTANCES (A) : 291.0 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.034 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 43.00 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 8.000 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.081 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.000 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.029 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.101 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228 REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4FEE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000072796. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9000 REMARK 200 MONOCHROMATOR : CHANNEL CUT SI(111) REMARK 200 OPTICS : TOROIDAL FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 549376 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.130 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : 0.11500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.50400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 2EZT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M AMMONIUM SULFATE, 200 MM REMARK 280 PHOSPHATE, 0.1 MM THIAMINE DIPHOSPHATE, 1 MM MAGNESIUM CHLORIDE, REMARK 280 PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 280K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.91000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.91000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 59.53500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 77.23000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 59.53500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 77.23000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 82.91000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 59.53500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 77.23000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 82.91000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 59.53500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 77.23000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 38840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 68800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -259.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 154.46000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A8281 LIES ON A SPECIAL POSITION. REMARK 375 HOH A8816 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 916 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1204 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1425 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1581 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1600 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 MET A 3 REMARK 465 LYS A 4 REMARK 465 GLN A 5 REMARK 465 THR A 6 REMARK 465 LYS A 7 REMARK 465 GLN A 8 REMARK 465 GLN A 595 REMARK 465 HIS A 596 REMARK 465 GLN A 597 REMARK 465 ILE A 598 REMARK 465 GLY A 599 REMARK 465 GLN A 600 REMARK 465 GLY A 601 REMARK 465 GLY A 602 REMARK 465 PHE A 603 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 MET B 3 REMARK 465 LYS B 4 REMARK 465 GLN B 5 REMARK 465 THR B 6 REMARK 465 LYS B 7 REMARK 465 GLN B 8 REMARK 465 ASP B 592 REMARK 465 ASP B 593 REMARK 465 LEU B 594 REMARK 465 GLN B 595 REMARK 465 HIS B 596 REMARK 465 GLN B 597 REMARK 465 ILE B 598 REMARK 465 GLY B 599 REMARK 465 GLN B 600 REMARK 465 GLY B 601 REMARK 465 GLY B 602 REMARK 465 PHE B 603 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG B 204 O HOH B 901 3655 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 48 CD - NE - CZ ANGL. DEV. = 11.2 DEGREES REMARK 500 ARG A 48 NH1 - CZ - NH2 ANGL. DEV. = -7.7 DEGREES REMARK 500 ARG A 48 NE - CZ - NH1 ANGL. DEV. = 9.6 DEGREES REMARK 500 ARG A 48 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 50 CD - NE - CZ ANGL. DEV. = 10.4 DEGREES REMARK 500 ARG A 50 NE - CZ - NH1 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 50 NE - CZ - NH2 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 50 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 57 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 57 NE - CZ - NH2 ANGL. DEV. = -6.4 DEGREES REMARK 500 GLY A 74 O - C - N ANGL. DEV. = -11.5 DEGREES REMARK 500 TYR A 95 CB - CG - CD2 ANGL. DEV. = 5.0 DEGREES REMARK 500 TYR A 95 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 TYR A 95 CB - CG - CD1 ANGL. DEV. = -4.1 DEGREES REMARK 500 PHE A 111 CD1 - CE1 - CZ ANGL. DEV. = 8.2 DEGREES REMARK 500 ARG A 155 CD - NE - CZ ANGL. DEV. = 10.9 DEGREES REMARK 500 ARG A 155 NE - CZ - NH1 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG A 155 NE - CZ - NH2 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG A 156 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 GLU A 196 CA - CB - CG ANGL. DEV. = -16.6 DEGREES REMARK 500 GLU A 196 OE1 - CD - OE2 ANGL. DEV. = 14.0 DEGREES REMARK 500 ARG A 204 CD - NE - CZ ANGL. DEV. = 19.5 DEGREES REMARK 500 ARG A 214 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 VAL A 283 CG1 - CB - CG2 ANGL. DEV. = 11.4 DEGREES REMARK 500 ARG A 300 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 357 NH1 - CZ - NH2 ANGL. DEV. = 14.0 DEGREES REMARK 500 ARG A 357 NE - CZ - NH1 ANGL. DEV. = -10.3 DEGREES REMARK 500 ARG A 357 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP A 491 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG A 515 NE - CZ - NH1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 515 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 548 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 548 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 GLU A 568 OE1 - CD - OE2 ANGL. DEV. = -10.8 DEGREES REMARK 500 ASP A 593 CB - CG - OD1 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG B 48 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG B 50 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 57 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG B 57 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 GLY B 74 O - C - N ANGL. DEV. = -11.6 DEGREES REMARK 500 PHE B 111 CD1 - CE1 - CZ ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG B 155 CD - NE - CZ ANGL. DEV. = 15.7 DEGREES REMARK 500 ARG B 155 NE - CZ - NH1 ANGL. DEV. = -9.0 DEGREES REMARK 500 ARG B 155 NE - CZ - NH2 ANGL. DEV. = 11.4 DEGREES REMARK 500 ARG B 156 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG B 156 NE - CZ - NH2 ANGL. DEV. = -6.3 DEGREES REMARK 500 GLU B 180 OE1 - CD - OE2 ANGL. DEV. = -8.6 DEGREES REMARK 500 ASP B 198 CA - CB - CG ANGL. DEV. = -16.9 DEGREES REMARK 500 ASP B 198 CB - CG - OD1 ANGL. DEV. = -9.2 DEGREES REMARK 500 ARG B 214 CD - NE - CZ ANGL. DEV. = 9.1 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 65 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 122 19.20 58.21 REMARK 500 ASN A 263 -115.59 79.50 REMARK 500 TYR A 287 112.38 -37.63 REMARK 500 SER A 342 150.93 -45.39 REMARK 500 SER A 342 150.93 -45.88 REMARK 500 ASP A 393 -160.64 -78.68 REMARK 500 HIS A 510 43.16 71.39 REMARK 500 LYS A 554 56.93 -144.61 REMARK 500 ASP A 593 92.11 -50.26 REMARK 500 GLN B 122 18.46 54.28 REMARK 500 ASN B 263 -116.72 80.91 REMARK 500 ASP B 393 -158.93 -78.44 REMARK 500 HIS B 510 43.48 71.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 50 0.12 SIDE CHAIN REMARK 500 ARG A 156 0.08 SIDE CHAIN REMARK 500 ARG A 204 0.09 SIDE CHAIN REMARK 500 ARG A 254 0.15 SIDE CHAIN REMARK 500 ARG B 48 0.08 SIDE CHAIN REMARK 500 ARG B 50 0.07 SIDE CHAIN REMARK 500 ARG B 224 0.14 SIDE CHAIN REMARK 500 ARG B 254 0.19 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 REACTION INTERMEDIATE 2-HYDROXYETHYL-THIAMIN DIPHOSPHATE (TDM) WAS REMARK 600 REFINED WITH NO GEOMETRIC RESTRAINTS AND REPRESENTS THE WEIGHTED REMARK 600 AVERAGE OF TWO EQUILIBRIUM STATES. TDM IS NOT ACCUMULATED AS A REMARK 600 PLANAR ENAMINE. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 710 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 447 OD1 REMARK 620 2 ASN A 474 OD1 90.5 REMARK 620 3 GLN A 476 O 102.6 86.5 REMARK 620 4 TDM A 708 O1A 86.5 175.3 90.5 REMARK 620 5 TDM A 708 O2B 167.6 97.6 87.3 85.9 REMARK 620 6 HOH A8082 O 86.7 87.8 169.1 95.8 84.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 708 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 447 OD1 REMARK 620 2 ASN B 474 OD1 90.3 REMARK 620 3 GLN B 476 O 101.8 86.1 REMARK 620 4 TDM B 704 O1A 87.2 175.8 91.2 REMARK 620 5 TDM B 704 O3B 167.9 96.9 88.3 86.1 REMARK 620 6 HOH B 940 O 86.9 87.4 169.1 95.8 83.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYR A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYR A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TDM A 708 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 709 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 710 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYR B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PYR B 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TDM B 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 708 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1POW RELATED DB: PDB REMARK 900 PYRUVATE OXIDASE WILD-TYPE REMARK 900 RELATED ID: 1POX RELATED DB: PDB REMARK 900 PYRUVATE OXIDASE, STABILIZED MUTANT REMARK 900 RELATED ID: 2EZ4 RELATED DB: PDB REMARK 900 PYRUVATE OXIDASE VARIANT F479W REMARK 900 RELATED ID: 2EZT RELATED DB: PDB REMARK 900 PYRUVATE OXIDASE VARIANT F479W IN COMPLEX WITH REACTION REMARK 900 INTERMEDIATE 2-HYDROXYETHYL-THIAMIN DIPHOSPHATE REMARK 900 RELATED ID: 2EZ8 RELATED DB: PDB REMARK 900 PYRUVATE OXIDASE VARIANT F479W IN COMPLEX WITH REACTION REMARK 900 INTERMEDIATE 2-LACTYL-THIAMIN DIPHOSPHATE REMARK 900 RELATED ID: 2EZ9 RELATED DB: PDB REMARK 900 PYRUVATE OXIDASE VARIANT F479W IN COMPLEX WITH REACTION REMARK 900 INTERMEDIATE ANALOGUE 2-PHOSPHONOLACTYL-THIAMIN DIPHOSPHATE REMARK 900 RELATED ID: 2EZU RELATED DB: PDB REMARK 900 PYRUVATE OXIDASE VARIANT F479W IN COMPLEX WITH REACTION REMARK 900 INTERMEDIATE 2-ACETYL-THIAMIN DIPHOSPHATE REMARK 900 RELATED ID: 4FEG RELATED DB: PDB DBREF 4FEE A 1 603 UNP C6VNC6 C6VNC6_LACPJ 1 603 DBREF 4FEE B 1 603 UNP C6VNC6 C6VNC6_LACPJ 1 603 SEQRES 1 A 603 MET VAL MET LYS GLN THR LYS GLN THR ASN ILE LEU ALA SEQRES 2 A 603 GLY ALA ALA VAL ILE LYS VAL LEU GLU ALA TRP GLY VAL SEQRES 3 A 603 ASP HIS LEU TYR GLY ILE PRO GLY GLY SER ILE ASN SER SEQRES 4 A 603 ILE MET ASP ALA LEU SER ALA GLU ARG ASP ARG ILE HIS SEQRES 5 A 603 TYR ILE GLN VAL ARG HIS GLU GLU VAL GLY ALA MET ALA SEQRES 6 A 603 ALA ALA ALA ASP ALA LYS LEU THR GLY LYS ILE GLY VAL SEQRES 7 A 603 CYS PHE GLY SER ALA GLY PRO GLY GLY THR HIS LEU MET SEQRES 8 A 603 ASN GLY LEU TYR ASP ALA ARG GLU ASP HIS VAL PRO VAL SEQRES 9 A 603 LEU ALA LEU ILE GLY GLN PHE GLY THR THR GLY MET ASN SEQRES 10 A 603 MET ASP THR PHE GLN GLU MET ASN GLU ASN PRO ILE TYR SEQRES 11 A 603 ALA ASP VAL ALA ASP TYR ASN VAL THR ALA VAL ASN ALA SEQRES 12 A 603 ALA THR LEU PRO HIS VAL ILE ASP GLU ALA ILE ARG ARG SEQRES 13 A 603 ALA TYR ALA HIS GLN GLY VAL ALA VAL VAL GLN ILE PRO SEQRES 14 A 603 VAL ASP LEU PRO TRP GLN GLN ILE PRO ALA GLU ASP TRP SEQRES 15 A 603 TYR ALA SER ALA ASN SER TYR GLN THR PRO LEU LEU PRO SEQRES 16 A 603 GLU PRO ASP VAL GLN ALA VAL THR ARG LEU THR GLN THR SEQRES 17 A 603 LEU LEU ALA ALA GLU ARG PRO LEU ILE TYR TYR GLY ILE SEQRES 18 A 603 GLY ALA ARG LYS ALA GLY LYS GLU LEU GLU GLN LEU SER SEQRES 19 A 603 LYS THR LEU LYS ILE PRO LEU MET SER THR TYR PRO ALA SEQRES 20 A 603 LYS GLY ILE VAL ALA ASP ARG TYR PRO ALA TYR LEU GLY SEQRES 21 A 603 SER ALA ASN ARG VAL ALA GLN LYS PRO ALA ASN GLU ALA SEQRES 22 A 603 LEU ALA GLN ALA ASP VAL VAL LEU PHE VAL GLY ASN ASN SEQRES 23 A 603 TYR PRO PHE ALA GLU VAL SER LYS ALA PHE LYS ASN THR SEQRES 24 A 603 ARG TYR PHE LEU GLN ILE ASP ILE ASP PRO ALA LYS LEU SEQRES 25 A 603 GLY LYS ARG HIS LYS THR ASP ILE ALA VAL LEU ALA ASP SEQRES 26 A 603 ALA GLN LYS THR LEU ALA ALA ILE LEU ALA GLN VAL SER SEQRES 27 A 603 GLU ARG GLU SER THR PRO TRP TRP GLN ALA ASN LEU ALA SEQRES 28 A 603 ASN VAL LYS ASN TRP ARG ALA TYR LEU ALA SER LEU GLU SEQRES 29 A 603 ASP LYS GLN GLU GLY PRO LEU GLN ALA TYR GLN VAL LEU SEQRES 30 A 603 ARG ALA VAL ASN LYS ILE ALA GLU PRO ASP ALA ILE TYR SEQRES 31 A 603 SER ILE ASP VAL GLY ASP ILE ASN LEU ASN ALA ASN ARG SEQRES 32 A 603 HIS LEU LYS LEU THR PRO SER ASN ARG HIS ILE THR SER SEQRES 33 A 603 ASN LEU PHE ALA THR MET GLY VAL GLY ILE PRO GLY ALA SEQRES 34 A 603 ILE ALA ALA LYS LEU ASN TYR PRO GLU ARG GLN VAL PHE SEQRES 35 A 603 ASN LEU ALA GLY ASP GLY GLY ALA SER MET THR MET GLN SEQRES 36 A 603 ASP LEU ALA THR GLN VAL GLN TYR HIS LEU PRO VAL ILE SEQRES 37 A 603 ASN VAL VAL PHE THR ASN CYS GLN TYR GLY PHE ILE LYS SEQRES 38 A 603 ASP GLU GLN GLU ASP THR ASN GLN ASN ASP PHE ILE GLY SEQRES 39 A 603 VAL GLU PHE ASN ASP ILE ASP PHE SER LYS ILE ALA ASP SEQRES 40 A 603 GLY VAL HIS MET GLN ALA PHE ARG VAL ASN LYS ILE GLU SEQRES 41 A 603 GLN LEU PRO ASP VAL PHE GLU GLN ALA LYS ALA ILE ALA SEQRES 42 A 603 GLN HIS GLU PRO VAL LEU ILE ASP ALA VAL ILE THR GLY SEQRES 43 A 603 ASP ARG PRO LEU PRO ALA GLU LYS LEU ARG LEU ASP SER SEQRES 44 A 603 ALA MET SER SER ALA ALA ASP ILE GLU ALA PHE LYS GLN SEQRES 45 A 603 ARG TYR GLU ALA GLN ASP LEU GLN PRO LEU SER THR TYR SEQRES 46 A 603 LEU LYS GLN PHE GLY LEU ASP ASP LEU GLN HIS GLN ILE SEQRES 47 A 603 GLY GLN GLY GLY PHE SEQRES 1 B 603 MET VAL MET LYS GLN THR LYS GLN THR ASN ILE LEU ALA SEQRES 2 B 603 GLY ALA ALA VAL ILE LYS VAL LEU GLU ALA TRP GLY VAL SEQRES 3 B 603 ASP HIS LEU TYR GLY ILE PRO GLY GLY SER ILE ASN SER SEQRES 4 B 603 ILE MET ASP ALA LEU SER ALA GLU ARG ASP ARG ILE HIS SEQRES 5 B 603 TYR ILE GLN VAL ARG HIS GLU GLU VAL GLY ALA MET ALA SEQRES 6 B 603 ALA ALA ALA ASP ALA LYS LEU THR GLY LYS ILE GLY VAL SEQRES 7 B 603 CYS PHE GLY SER ALA GLY PRO GLY GLY THR HIS LEU MET SEQRES 8 B 603 ASN GLY LEU TYR ASP ALA ARG GLU ASP HIS VAL PRO VAL SEQRES 9 B 603 LEU ALA LEU ILE GLY GLN PHE GLY THR THR GLY MET ASN SEQRES 10 B 603 MET ASP THR PHE GLN GLU MET ASN GLU ASN PRO ILE TYR SEQRES 11 B 603 ALA ASP VAL ALA ASP TYR ASN VAL THR ALA VAL ASN ALA SEQRES 12 B 603 ALA THR LEU PRO HIS VAL ILE ASP GLU ALA ILE ARG ARG SEQRES 13 B 603 ALA TYR ALA HIS GLN GLY VAL ALA VAL VAL GLN ILE PRO SEQRES 14 B 603 VAL ASP LEU PRO TRP GLN GLN ILE PRO ALA GLU ASP TRP SEQRES 15 B 603 TYR ALA SER ALA ASN SER TYR GLN THR PRO LEU LEU PRO SEQRES 16 B 603 GLU PRO ASP VAL GLN ALA VAL THR ARG LEU THR GLN THR SEQRES 17 B 603 LEU LEU ALA ALA GLU ARG PRO LEU ILE TYR TYR GLY ILE SEQRES 18 B 603 GLY ALA ARG LYS ALA GLY LYS GLU LEU GLU GLN LEU SER SEQRES 19 B 603 LYS THR LEU LYS ILE PRO LEU MET SER THR TYR PRO ALA SEQRES 20 B 603 LYS GLY ILE VAL ALA ASP ARG TYR PRO ALA TYR LEU GLY SEQRES 21 B 603 SER ALA ASN ARG VAL ALA GLN LYS PRO ALA ASN GLU ALA SEQRES 22 B 603 LEU ALA GLN ALA ASP VAL VAL LEU PHE VAL GLY ASN ASN SEQRES 23 B 603 TYR PRO PHE ALA GLU VAL SER LYS ALA PHE LYS ASN THR SEQRES 24 B 603 ARG TYR PHE LEU GLN ILE ASP ILE ASP PRO ALA LYS LEU SEQRES 25 B 603 GLY LYS ARG HIS LYS THR ASP ILE ALA VAL LEU ALA ASP SEQRES 26 B 603 ALA GLN LYS THR LEU ALA ALA ILE LEU ALA GLN VAL SER SEQRES 27 B 603 GLU ARG GLU SER THR PRO TRP TRP GLN ALA ASN LEU ALA SEQRES 28 B 603 ASN VAL LYS ASN TRP ARG ALA TYR LEU ALA SER LEU GLU SEQRES 29 B 603 ASP LYS GLN GLU GLY PRO LEU GLN ALA TYR GLN VAL LEU SEQRES 30 B 603 ARG ALA VAL ASN LYS ILE ALA GLU PRO ASP ALA ILE TYR SEQRES 31 B 603 SER ILE ASP VAL GLY ASP ILE ASN LEU ASN ALA ASN ARG SEQRES 32 B 603 HIS LEU LYS LEU THR PRO SER ASN ARG HIS ILE THR SER SEQRES 33 B 603 ASN LEU PHE ALA THR MET GLY VAL GLY ILE PRO GLY ALA SEQRES 34 B 603 ILE ALA ALA LYS LEU ASN TYR PRO GLU ARG GLN VAL PHE SEQRES 35 B 603 ASN LEU ALA GLY ASP GLY GLY ALA SER MET THR MET GLN SEQRES 36 B 603 ASP LEU ALA THR GLN VAL GLN TYR HIS LEU PRO VAL ILE SEQRES 37 B 603 ASN VAL VAL PHE THR ASN CYS GLN TYR GLY PHE ILE LYS SEQRES 38 B 603 ASP GLU GLN GLU ASP THR ASN GLN ASN ASP PHE ILE GLY SEQRES 39 B 603 VAL GLU PHE ASN ASP ILE ASP PHE SER LYS ILE ALA ASP SEQRES 40 B 603 GLY VAL HIS MET GLN ALA PHE ARG VAL ASN LYS ILE GLU SEQRES 41 B 603 GLN LEU PRO ASP VAL PHE GLU GLN ALA LYS ALA ILE ALA SEQRES 42 B 603 GLN HIS GLU PRO VAL LEU ILE ASP ALA VAL ILE THR GLY SEQRES 43 B 603 ASP ARG PRO LEU PRO ALA GLU LYS LEU ARG LEU ASP SER SEQRES 44 B 603 ALA MET SER SER ALA ALA ASP ILE GLU ALA PHE LYS GLN SEQRES 45 B 603 ARG TYR GLU ALA GLN ASP LEU GLN PRO LEU SER THR TYR SEQRES 46 B 603 LEU LYS GLN PHE GLY LEU ASP ASP LEU GLN HIS GLN ILE SEQRES 47 B 603 GLY GLN GLY GLY PHE HET FAD A 701 53 HET GOL A 702 6 HET PYR A 703 6 HET PYR A 704 6 HET GOL A 705 6 HET GOL A 706 6 HET PO4 A 707 5 HET TDM A 708 29 HET GOL A 709 6 HET MG A 710 1 HET FAD B 701 53 HET PYR B 702 6 HET PYR B 703 6 HET TDM B 704 29 HET PO4 B 705 5 HET GOL B 706 6 HET GOL B 707 6 HET MG B 708 1 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM GOL GLYCEROL HETNAM PYR PYRUVIC ACID HETNAM PO4 PHOSPHATE ION HETNAM TDM 2-[(2E)-3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-2- HETNAM 2 TDM (1-HYDROXYETHYLIDENE)-4-METHYL-2,3-DIHYDRO-1,3- HETNAM 3 TDM THIAZOL-5-YL]ETHYL TRIHYDROGEN DIPHOSPHATE HETNAM MG MAGNESIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN TDM 2-HYDROXYETHYLTHIAMIN DIPHOSPHATE FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 GOL 6(C3 H8 O3) FORMUL 5 PYR 4(C3 H4 O3) FORMUL 9 PO4 2(O4 P 3-) FORMUL 10 TDM 2(C14 H22 N4 O8 P2 S) FORMUL 12 MG 2(MG 2+) FORMUL 21 HOH *1671(H2 O) HELIX 1 1 ALA A 13 TRP A 24 1 12 HELIX 2 2 GLY A 34 SER A 36 5 3 HELIX 3 3 ILE A 37 GLU A 47 1 11 HELIX 4 4 HIS A 58 GLY A 74 1 17 HELIX 5 5 GLY A 84 HIS A 89 1 6 HELIX 6 6 LEU A 90 ASP A 100 1 11 HELIX 7 7 GLU A 126 ALA A 131 5 6 HELIX 8 8 THR A 145 GLN A 161 1 17 HELIX 9 9 ASP A 171 TRP A 174 5 4 HELIX 10 10 SER A 185 TYR A 189 5 5 HELIX 11 11 ASP A 198 ALA A 212 1 15 HELIX 12 12 ILE A 221 ARG A 224 5 4 HELIX 13 13 ALA A 226 LYS A 238 1 13 HELIX 14 14 TYR A 245 LYS A 248 5 4 HELIX 15 15 GLN A 267 ALA A 277 1 11 HELIX 16 16 ASP A 308 LEU A 312 5 5 HELIX 17 17 ASP A 325 GLN A 336 1 12 HELIX 18 18 THR A 343 ASP A 365 1 23 HELIX 19 19 GLN A 372 ALA A 384 1 13 HELIX 20 20 GLY A 395 LEU A 405 1 11 HELIX 21 21 VAL A 424 TYR A 436 1 13 HELIX 22 22 ASP A 447 MET A 454 1 8 HELIX 23 23 ASP A 456 TYR A 463 1 8 HELIX 24 24 TYR A 477 ASN A 488 1 12 HELIX 25 25 ASP A 501 VAL A 509 1 9 HELIX 26 26 LYS A 518 GLU A 520 5 3 HELIX 27 27 GLN A 521 ALA A 533 1 13 HELIX 28 28 SER A 563 GLU A 575 1 13 HELIX 29 29 PRO A 581 PHE A 589 1 9 HELIX 30 30 ALA B 13 TRP B 24 1 12 HELIX 31 31 GLY B 34 SER B 36 5 3 HELIX 32 32 ILE B 37 ALA B 46 1 10 HELIX 33 33 HIS B 58 GLY B 74 1 17 HELIX 34 34 GLY B 84 HIS B 89 1 6 HELIX 35 35 LEU B 90 ASP B 100 1 11 HELIX 36 36 GLU B 126 ALA B 131 5 6 HELIX 37 37 THR B 145 GLN B 161 1 17 HELIX 38 38 ASP B 171 TRP B 174 5 4 HELIX 39 39 SER B 185 TYR B 189 5 5 HELIX 40 40 ASP B 198 ALA B 212 1 15 HELIX 41 41 ILE B 221 ARG B 224 5 4 HELIX 42 42 ALA B 226 LYS B 238 1 13 HELIX 43 43 TYR B 245 LYS B 248 5 4 HELIX 44 44 GLN B 267 ALA B 277 1 11 HELIX 45 45 ASP B 308 LEU B 312 5 5 HELIX 46 46 ASP B 325 ALA B 335 1 11 HELIX 47 47 THR B 343 ASP B 365 1 23 HELIX 48 48 GLN B 372 ALA B 384 1 13 HELIX 49 49 GLY B 395 LEU B 405 1 11 HELIX 50 50 VAL B 424 TYR B 436 1 13 HELIX 51 51 ASP B 447 MET B 454 1 8 HELIX 52 52 ASP B 456 TYR B 463 1 8 HELIX 53 53 TYR B 477 ASN B 488 1 12 HELIX 54 54 ASP B 501 VAL B 509 1 9 HELIX 55 55 LYS B 518 GLU B 520 5 3 HELIX 56 56 GLN B 521 ALA B 533 1 13 HELIX 57 57 SER B 563 GLU B 575 1 13 HELIX 58 58 PRO B 581 PHE B 589 1 9 SHEET 1 A 2 ASN A 10 LEU A 12 0 SHEET 2 A 2 GLN A 176 PRO A 178 -1 O ILE A 177 N ILE A 11 SHEET 1 B 2 HIS A 28 GLY A 31 0 SHEET 2 B 2 HIS A 52 GLN A 55 1 O ILE A 54 N LEU A 29 SHEET 1 C 4 GLY A 77 GLY A 81 0 SHEET 2 C 4 VAL A 104 GLN A 110 1 O LEU A 105 N GLY A 77 SHEET 3 C 4 VAL A 163 PRO A 169 1 O ILE A 168 N ILE A 108 SHEET 4 C 4 TYR A 136 THR A 139 1 N TYR A 136 O VAL A 165 SHEET 1 D 5 LEU A 241 SER A 243 0 SHEET 2 D 5 PRO A 215 TYR A 219 1 N ILE A 217 O MET A 242 SHEET 3 D 5 VAL A 279 VAL A 283 1 O LEU A 281 N TYR A 218 SHEET 4 D 5 TYR A 301 ASP A 306 1 O LEU A 303 N PHE A 282 SHEET 5 D 5 ILE A 320 LEU A 323 1 O VAL A 322 N GLN A 304 SHEET 1 E 6 ARG A 412 ILE A 414 0 SHEET 2 E 6 ILE A 389 ILE A 392 1 N ILE A 392 O ILE A 414 SHEET 3 E 6 VAL A 441 GLY A 446 1 O PHE A 442 N SER A 391 SHEET 4 E 6 ILE A 468 THR A 473 1 O VAL A 470 N ASN A 443 SHEET 5 E 6 VAL A 538 VAL A 543 1 O ALA A 542 N THR A 473 SHEET 6 E 6 GLN A 512 VAL A 516 1 N VAL A 516 O VAL A 543 SHEET 1 F 2 ASN B 10 LEU B 12 0 SHEET 2 F 2 GLN B 176 PRO B 178 -1 O ILE B 177 N ILE B 11 SHEET 1 G 2 HIS B 28 GLY B 31 0 SHEET 2 G 2 HIS B 52 GLN B 55 1 O ILE B 54 N LEU B 29 SHEET 1 H 4 GLY B 77 GLY B 81 0 SHEET 2 H 4 VAL B 104 GLN B 110 1 O LEU B 105 N GLY B 77 SHEET 3 H 4 VAL B 163 PRO B 169 1 O ILE B 168 N ILE B 108 SHEET 4 H 4 TYR B 136 THR B 139 1 N TYR B 136 O VAL B 165 SHEET 1 I 5 LEU B 241 SER B 243 0 SHEET 2 I 5 PRO B 215 TYR B 219 1 N ILE B 217 O MET B 242 SHEET 3 I 5 VAL B 279 VAL B 283 1 O LEU B 281 N TYR B 218 SHEET 4 I 5 TYR B 301 ASP B 306 1 O LEU B 303 N PHE B 282 SHEET 5 I 5 ILE B 320 LEU B 323 1 O VAL B 322 N GLN B 304 SHEET 1 J 6 ARG B 412 ILE B 414 0 SHEET 2 J 6 ILE B 389 ILE B 392 1 N ILE B 392 O ILE B 414 SHEET 3 J 6 VAL B 441 GLY B 446 1 O PHE B 442 N SER B 391 SHEET 4 J 6 ILE B 468 THR B 473 1 O VAL B 470 N ASN B 443 SHEET 5 J 6 VAL B 538 VAL B 543 1 O ALA B 542 N VAL B 471 SHEET 6 J 6 GLN B 512 VAL B 516 1 N VAL B 516 O VAL B 543 LINK OD1 ASP A 447 MG MG A 710 1555 1555 2.04 LINK OD1 ASN A 474 MG MG A 710 1555 1555 2.12 LINK O GLN A 476 MG MG A 710 1555 1555 2.06 LINK O1A TDM A 708 MG MG A 710 1555 1555 2.04 LINK O2B TDM A 708 MG MG A 710 1555 1555 2.12 LINK MG MG A 710 O HOH A8082 1555 1555 2.11 LINK OD1 ASP B 447 MG MG B 708 1555 1555 2.05 LINK OD1 ASN B 474 MG MG B 708 1555 1555 2.11 LINK O GLN B 476 MG MG B 708 1555 1555 2.06 LINK O1A TDM B 704 MG MG B 708 1555 1555 2.04 LINK O3B TDM B 704 MG MG B 708 1555 1555 2.13 LINK MG MG B 708 O HOH B 940 1555 1555 2.14 SITE 1 AC1 35 HIS A 101 PHE A 121 GLY A 220 ILE A 221 SITE 2 AC1 35 GLY A 222 THR A 244 TYR A 245 ALA A 262 SITE 3 AC1 35 ASN A 263 ARG A 264 VAL A 265 GLY A 284 SITE 4 AC1 35 ASN A 285 ASN A 286 PRO A 288 PHE A 289 SITE 5 AC1 35 ASP A 306 ILE A 307 ASP A 308 LYS A 311 SITE 6 AC1 35 ALA A 324 ASP A 325 ALA A 326 ASN A 398 SITE 7 AC1 35 SER A 416 ASN A 417 PYR A 704 TDM A 708 SITE 8 AC1 35 HOH A8003 HOH A8015 HOH A8037 HOH A8063 SITE 9 AC1 35 HOH A8371 HOH A8455 HOH A8615 SITE 1 AC2 8 ALA A 23 TRP A 24 LYS A 75 TYR A 158 SITE 2 AC2 8 TYR A 189 HOH A8632 HOH B1427 HOH B1444 SITE 1 AC3 9 LEU A 555 ARG A 556 LEU A 557 ASP A 558 SITE 2 AC3 9 MET A 561 SER A 562 HOH A8159 HOH A8235 SITE 3 AC3 9 HOH A8608 SITE 1 AC4 6 PHE A 121 ASN A 263 ARG A 264 FAD A 701 SITE 2 AC4 6 HOH A8819 HOH A8821 SITE 1 AC5 9 LYS A 433 PRO A 437 GLU A 438 PRO A 466 SITE 2 AC5 9 ALA A 533 GLN A 534 HOH A8197 HOH A8212 SITE 3 AC5 9 HOH A8480 SITE 1 AC6 4 TRP A 174 THR A 487 GLN A 489 HOH A8574 SITE 1 AC7 11 GLY A 34 GLY A 35 SER A 36 SER A 82 SITE 2 AC7 11 PHE A 111 GLN A 122 ILE A 480 TDM A 708 SITE 3 AC7 11 HOH A8221 HOH A8284 HOH A8813 SITE 1 AC8 27 PRO A 33 GLU A 59 SER A 82 PRO A 85 SITE 2 AC8 27 HIS A 89 GLN A 122 VAL A 394 ASP A 396 SITE 3 AC8 27 ALA A 420 MET A 422 GLY A 446 ASP A 447 SITE 4 AC8 27 GLY A 448 GLY A 449 ASN A 474 GLN A 476 SITE 5 AC8 27 TYR A 477 GLY A 478 PHE A 479 ILE A 480 SITE 6 AC8 27 FAD A 701 PO4 A 707 MG A 710 HOH A8052 SITE 7 AC8 27 HOH A8073 HOH A8082 HOH A8115 SITE 1 AC9 6 ARG A 224 PRO A 409 HOH A8127 HOH A8189 SITE 2 AC9 6 HOH A8271 HOH A8741 SITE 1 BC1 5 ASP A 447 ASN A 474 GLN A 476 TDM A 708 SITE 2 BC1 5 HOH A8082 SITE 1 BC2 35 HIS B 101 PHE B 121 GLY B 220 ILE B 221 SITE 2 BC2 35 GLY B 222 THR B 244 TYR B 245 ALA B 262 SITE 3 BC2 35 ASN B 263 ARG B 264 VAL B 265 GLY B 284 SITE 4 BC2 35 ASN B 285 ASN B 286 PRO B 288 PHE B 289 SITE 5 BC2 35 ASP B 306 ILE B 307 ASP B 308 LYS B 311 SITE 6 BC2 35 ALA B 324 ASP B 325 ALA B 326 ASN B 398 SITE 7 BC2 35 SER B 416 ASN B 417 PYR B 703 TDM B 704 SITE 8 BC2 35 HOH B 811 HOH B 821 HOH B 837 HOH B 858 SITE 9 BC2 35 HOH B1110 HOH B1158 HOH B1524 SITE 1 BC3 9 LEU B 555 ARG B 556 LEU B 557 ASP B 558 SITE 2 BC3 9 MET B 561 SER B 562 HOH B1126 HOH B1192 SITE 3 BC3 9 HOH B1262 SITE 1 BC4 5 PHE B 121 ASN B 263 ARG B 264 FAD B 701 SITE 2 BC4 5 HOH B1275 SITE 1 BC5 27 PRO B 33 GLU B 59 SER B 82 PRO B 85 SITE 2 BC5 27 HIS B 89 GLN B 122 VAL B 394 ASP B 396 SITE 3 BC5 27 ALA B 420 MET B 422 GLY B 446 ASP B 447 SITE 4 BC5 27 GLY B 448 GLY B 449 ASN B 474 GLN B 476 SITE 5 BC5 27 TYR B 477 GLY B 478 PHE B 479 ILE B 480 SITE 6 BC5 27 FAD B 701 PO4 B 705 MG B 708 HOH B 820 SITE 7 BC5 27 HOH B 929 HOH B 940 HOH B1335 SITE 1 BC6 10 GLY B 34 GLY B 35 SER B 36 SER B 82 SITE 2 BC6 10 PHE B 111 GLN B 122 ILE B 480 TDM B 704 SITE 3 BC6 10 HOH B 928 HOH B 950 SITE 1 BC7 7 HOH A8219 ALA B 569 PHE B 570 ARG B 573 SITE 2 BC7 7 TYR B 574 HOH B 907 HOH B 996 SITE 1 BC8 6 ARG B 224 PRO B 409 ARG B 412 HOH B 943 SITE 2 BC8 6 HOH B1089 HOH B1402 SITE 1 BC9 5 ASP B 447 ASN B 474 GLN B 476 TDM B 704 SITE 2 BC9 5 HOH B 940 CRYST1 119.070 154.460 165.820 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008398 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006474 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006031 0.00000