HEADER HYDROLASE 01-JUN-12 4FFS TITLE CRYSTAL STRUCTURE OF 5'-METHYLTHIOADENOSINE/S-ADENOSYLHOMOCYSTEINE TITLE 2 NUCLEOSIDASE FROM HELICOBACTER PYLORI WITH BUTYL-THIO-DADME- TITLE 3 IMMUCILLIN-A COMPND MOL_ID: 1; COMPND 2 MOLECULE: MTA/SAH NUCLEOSIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 5'-METHYLTHIOADENOSINE NUCLEOSIDASE, S-ADENOSYLHOMOCYSTEINE COMPND 5 NUCLEOSIDASE; COMPND 6 EC: 3.2.2.9; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 85963; SOURCE 4 STRAIN: J99; SOURCE 5 GENE: JHP_0082, MTN, MTNN, PFS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET32A KEYWDS L-METHIONINE BIOSYNTHETIC PROCESS FROM S-ADENOSYLMETHIONINE, L- KEYWDS 2 METHIONINE SALVAGE FROM METHYLTHIOADENOSINE, 5'- KEYWDS 3 METHYLTHIOADENOSINE/S-ADENOSYLHOMOCYSTEINE NUCLEOSIDASE, KEYWDS 4 ADENOSYLHOMOCYSTEINE NUCLEOSIDASE ACTIVITY, METHYLTHIOADENOSINE KEYWDS 5 NUCLEOSIDASE ACTIVITY, HYDROLASE ACTIVITY, ACTING ON GLYCOSYL BONDS, KEYWDS 6 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.M.HAAPALAINEN,A.RINALDO-MATTHIS,R.L.BROWN,G.E.NORRIS,S.C.ALMO, AUTHOR 2 V.L.SCHRAMM REVDAT 2 28-FEB-24 4FFS 1 REMARK SEQADV REVDAT 1 26-SEP-12 4FFS 0 JRNL AUTH S.WANG,A.M.HAAPALAINEN,F.YAN,Q.DU,P.C.TYLER,G.B.EVANS, JRNL AUTH 2 A.RINALDO-MATTHIS,R.L.BROWN,G.E.NORRIS,S.C.ALMO,V.L.SCHRAMM JRNL TITL A PICOMOLAR TRANSITION STATE ANALOGUE INHIBITOR OF MTAN AS A JRNL TITL 2 SPECIFIC ANTIBIOTIC FOR HELICOBACTER PYLORI. JRNL REF BIOCHEMISTRY V. 51 6892 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22891633 JRNL DOI 10.1021/BI3009664 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0025 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 25229 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1320 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1815 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1860 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1779 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 229 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.109 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.281 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1881 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1854 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2544 ; 1.385 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4295 ; 0.759 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 245 ; 5.694 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 78 ;34.879 ;25.769 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 346 ;13.163 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;14.130 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 295 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2108 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 407 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4FFS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000072846. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.10010 REMARK 200 MONOCHROMATOR : SI III REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26569 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : 0.09900 REMARK 200 FOR THE DATA SET : 23.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.61500 REMARK 200 R SYM FOR SHELL (I) : 0.61500 REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRI-SODIUM CITRATE, 0.1M TRIS, PH REMARK 280 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 Y,X,-Z REMARK 290 14555 -Y,-X,-Z REMARK 290 15555 Y,-X,Z REMARK 290 16555 -Y,X,Z REMARK 290 17555 X,Z,-Y REMARK 290 18555 -X,Z,Y REMARK 290 19555 -X,-Z,-Y REMARK 290 20555 X,-Z,Y REMARK 290 21555 Z,Y,-X REMARK 290 22555 Z,-Y,X REMARK 290 23555 -Z,Y,X REMARK 290 24555 -Z,-Y,-X REMARK 290 25555 X+1/2,Y+1/2,Z+1/2 REMARK 290 26555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 27555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 28555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 29555 Z+1/2,X+1/2,Y+1/2 REMARK 290 30555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 31555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 32555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 33555 Y+1/2,Z+1/2,X+1/2 REMARK 290 34555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 35555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 36555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 37555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 38555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 39555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 40555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 41555 X+1/2,Z+1/2,-Y+1/2 REMARK 290 42555 -X+1/2,Z+1/2,Y+1/2 REMARK 290 43555 -X+1/2,-Z+1/2,-Y+1/2 REMARK 290 44555 X+1/2,-Z+1/2,Y+1/2 REMARK 290 45555 Z+1/2,Y+1/2,-X+1/2 REMARK 290 46555 Z+1/2,-Y+1/2,X+1/2 REMARK 290 47555 -Z+1/2,Y+1/2,X+1/2 REMARK 290 48555 -Z+1/2,-Y+1/2,-X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 25 1.000000 0.000000 0.000000 78.86600 REMARK 290 SMTRY2 25 0.000000 1.000000 0.000000 78.86600 REMARK 290 SMTRY3 25 0.000000 0.000000 1.000000 78.86600 REMARK 290 SMTRY1 26 -1.000000 0.000000 0.000000 78.86600 REMARK 290 SMTRY2 26 0.000000 -1.000000 0.000000 78.86600 REMARK 290 SMTRY3 26 0.000000 0.000000 1.000000 78.86600 REMARK 290 SMTRY1 27 -1.000000 0.000000 0.000000 78.86600 REMARK 290 SMTRY2 27 0.000000 1.000000 0.000000 78.86600 REMARK 290 SMTRY3 27 0.000000 0.000000 -1.000000 78.86600 REMARK 290 SMTRY1 28 1.000000 0.000000 0.000000 78.86600 REMARK 290 SMTRY2 28 0.000000 -1.000000 0.000000 78.86600 REMARK 290 SMTRY3 28 0.000000 0.000000 -1.000000 78.86600 REMARK 290 SMTRY1 29 0.000000 0.000000 1.000000 78.86600 REMARK 290 SMTRY2 29 1.000000 0.000000 0.000000 78.86600 REMARK 290 SMTRY3 29 0.000000 1.000000 0.000000 78.86600 REMARK 290 SMTRY1 30 0.000000 0.000000 1.000000 78.86600 REMARK 290 SMTRY2 30 -1.000000 0.000000 0.000000 78.86600 REMARK 290 SMTRY3 30 0.000000 -1.000000 0.000000 78.86600 REMARK 290 SMTRY1 31 0.000000 0.000000 -1.000000 78.86600 REMARK 290 SMTRY2 31 -1.000000 0.000000 0.000000 78.86600 REMARK 290 SMTRY3 31 0.000000 1.000000 0.000000 78.86600 REMARK 290 SMTRY1 32 0.000000 0.000000 -1.000000 78.86600 REMARK 290 SMTRY2 32 1.000000 0.000000 0.000000 78.86600 REMARK 290 SMTRY3 32 0.000000 -1.000000 0.000000 78.86600 REMARK 290 SMTRY1 33 0.000000 1.000000 0.000000 78.86600 REMARK 290 SMTRY2 33 0.000000 0.000000 1.000000 78.86600 REMARK 290 SMTRY3 33 1.000000 0.000000 0.000000 78.86600 REMARK 290 SMTRY1 34 0.000000 -1.000000 0.000000 78.86600 REMARK 290 SMTRY2 34 0.000000 0.000000 1.000000 78.86600 REMARK 290 SMTRY3 34 -1.000000 0.000000 0.000000 78.86600 REMARK 290 SMTRY1 35 0.000000 1.000000 0.000000 78.86600 REMARK 290 SMTRY2 35 0.000000 0.000000 -1.000000 78.86600 REMARK 290 SMTRY3 35 -1.000000 0.000000 0.000000 78.86600 REMARK 290 SMTRY1 36 0.000000 -1.000000 0.000000 78.86600 REMARK 290 SMTRY2 36 0.000000 0.000000 -1.000000 78.86600 REMARK 290 SMTRY3 36 1.000000 0.000000 0.000000 78.86600 REMARK 290 SMTRY1 37 0.000000 1.000000 0.000000 78.86600 REMARK 290 SMTRY2 37 1.000000 0.000000 0.000000 78.86600 REMARK 290 SMTRY3 37 0.000000 0.000000 -1.000000 78.86600 REMARK 290 SMTRY1 38 0.000000 -1.000000 0.000000 78.86600 REMARK 290 SMTRY2 38 -1.000000 0.000000 0.000000 78.86600 REMARK 290 SMTRY3 38 0.000000 0.000000 -1.000000 78.86600 REMARK 290 SMTRY1 39 0.000000 1.000000 0.000000 78.86600 REMARK 290 SMTRY2 39 -1.000000 0.000000 0.000000 78.86600 REMARK 290 SMTRY3 39 0.000000 0.000000 1.000000 78.86600 REMARK 290 SMTRY1 40 0.000000 -1.000000 0.000000 78.86600 REMARK 290 SMTRY2 40 1.000000 0.000000 0.000000 78.86600 REMARK 290 SMTRY3 40 0.000000 0.000000 1.000000 78.86600 REMARK 290 SMTRY1 41 1.000000 0.000000 0.000000 78.86600 REMARK 290 SMTRY2 41 0.000000 0.000000 1.000000 78.86600 REMARK 290 SMTRY3 41 0.000000 -1.000000 0.000000 78.86600 REMARK 290 SMTRY1 42 -1.000000 0.000000 0.000000 78.86600 REMARK 290 SMTRY2 42 0.000000 0.000000 1.000000 78.86600 REMARK 290 SMTRY3 42 0.000000 1.000000 0.000000 78.86600 REMARK 290 SMTRY1 43 -1.000000 0.000000 0.000000 78.86600 REMARK 290 SMTRY2 43 0.000000 0.000000 -1.000000 78.86600 REMARK 290 SMTRY3 43 0.000000 -1.000000 0.000000 78.86600 REMARK 290 SMTRY1 44 1.000000 0.000000 0.000000 78.86600 REMARK 290 SMTRY2 44 0.000000 0.000000 -1.000000 78.86600 REMARK 290 SMTRY3 44 0.000000 1.000000 0.000000 78.86600 REMARK 290 SMTRY1 45 0.000000 0.000000 1.000000 78.86600 REMARK 290 SMTRY2 45 0.000000 1.000000 0.000000 78.86600 REMARK 290 SMTRY3 45 -1.000000 0.000000 0.000000 78.86600 REMARK 290 SMTRY1 46 0.000000 0.000000 1.000000 78.86600 REMARK 290 SMTRY2 46 0.000000 -1.000000 0.000000 78.86600 REMARK 290 SMTRY3 46 1.000000 0.000000 0.000000 78.86600 REMARK 290 SMTRY1 47 0.000000 0.000000 -1.000000 78.86600 REMARK 290 SMTRY2 47 0.000000 1.000000 0.000000 78.86600 REMARK 290 SMTRY3 47 1.000000 0.000000 0.000000 78.86600 REMARK 290 SMTRY1 48 0.000000 0.000000 -1.000000 78.86600 REMARK 290 SMTRY2 48 0.000000 -1.000000 0.000000 78.86600 REMARK 290 SMTRY3 48 -1.000000 0.000000 0.000000 78.86600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 520 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 610 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 51 161.02 80.69 REMARK 500 ASN A 89 -14.36 82.35 REMARK 500 SER A 117 -148.25 -135.52 REMARK 500 HIS A 155 47.25 -154.47 REMARK 500 GLU A 175 -26.20 -141.20 REMARK 500 ASP A 201 -163.52 -120.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BIG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 302 DBREF 4FFS A 1 230 UNP Q9ZMY2 MTNN_HELPJ 1 230 SEQADV 4FFS MET A -8 UNP Q9ZMY2 INITIATING METHIONINE SEQADV 4FFS HIS A -7 UNP Q9ZMY2 EXPRESSION TAG SEQADV 4FFS HIS A -6 UNP Q9ZMY2 EXPRESSION TAG SEQADV 4FFS HIS A -5 UNP Q9ZMY2 EXPRESSION TAG SEQADV 4FFS HIS A -4 UNP Q9ZMY2 EXPRESSION TAG SEQADV 4FFS HIS A -3 UNP Q9ZMY2 EXPRESSION TAG SEQADV 4FFS HIS A -2 UNP Q9ZMY2 EXPRESSION TAG SEQADV 4FFS GLU A -1 UNP Q9ZMY2 EXPRESSION TAG SEQADV 4FFS PHE A 0 UNP Q9ZMY2 EXPRESSION TAG SEQRES 1 A 239 MET HIS HIS HIS HIS HIS HIS GLU PHE MET GLN LYS ILE SEQRES 2 A 239 GLY ILE LEU GLY ALA MET ARG GLU GLU ILE THR PRO ILE SEQRES 3 A 239 LEU GLU LEU PHE GLY VAL ASP PHE GLU GLU ILE PRO LEU SEQRES 4 A 239 GLY GLY ASN VAL PHE HIS LYS GLY VAL TYR HIS ASN LYS SEQRES 5 A 239 GLU ILE ILE VAL ALA TYR SER LYS ILE GLY LYS VAL HIS SEQRES 6 A 239 SER THR LEU THR THR THR SER MET ILE LEU ALA PHE GLY SEQRES 7 A 239 VAL GLN LYS VAL LEU PHE SER GLY VAL ALA GLY SER LEU SEQRES 8 A 239 VAL LYS ASP LEU LYS ILE ASN ASP LEU LEU VAL ALA THR SEQRES 9 A 239 GLN LEU VAL GLN HIS ASP VAL ASP LEU SER ALA PHE ASP SEQRES 10 A 239 HIS PRO LEU GLY PHE ILE PRO GLU SER ALA ILE PHE ILE SEQRES 11 A 239 GLU THR SER GLY SER LEU ASN ALA LEU ALA LYS LYS ILE SEQRES 12 A 239 ALA ASN GLU GLN HIS ILE ALA LEU LYS GLU GLY VAL ILE SEQRES 13 A 239 ALA SER GLY ASP GLN PHE VAL HIS SER LYS GLU ARG LYS SEQRES 14 A 239 GLU PHE LEU VAL SER GLU PHE LYS ALA SER ALA VAL GLU SEQRES 15 A 239 MET GLU GLY ALA SER VAL ALA PHE VAL CYS GLN LYS PHE SEQRES 16 A 239 GLY VAL PRO CYS CYS VAL LEU ARG SER ILE SER ASP ASN SEQRES 17 A 239 ALA ASP GLU LYS ALA GLY MET SER PHE ASP GLU PHE LEU SEQRES 18 A 239 GLU LYS SER ALA HIS THR SER ALA LYS PHE LEU LYS SER SEQRES 19 A 239 MET VAL ASP GLU LEU HET BIG A 301 23 HET CL A 302 1 HETNAM BIG (3R,4S)-1-[(4-AMINO-5H-PYRROLO[3,2-D]PYRIMIDIN-7-YL) HETNAM 2 BIG METHYL]-4-[(BUTYLSULFANYL)METHYL]PYRROLIDIN-3-OL HETNAM CL CHLORIDE ION HETSYN BIG BUTYLTHIO-DADME-IMMUCILLIN A FORMUL 2 BIG C16 H25 N5 O S FORMUL 3 CL CL 1- FORMUL 4 HOH *229(H2 O) HELIX 1 1 MET A 10 GLY A 22 1 13 HELIX 2 2 GLY A 53 GLY A 69 1 17 HELIX 3 3 LEU A 104 ASP A 108 5 5 HELIX 4 4 SER A 124 GLN A 138 1 15 HELIX 5 5 SER A 156 LYS A 168 1 13 HELIX 6 6 GLU A 175 PHE A 186 1 12 HELIX 7 7 LYS A 203 GLU A 229 1 27 SHEET 1 A 9 GLU A 26 LEU A 30 0 SHEET 2 A 9 ASN A 33 TYR A 40 -1 O PHE A 35 N ILE A 28 SHEET 3 A 9 LYS A 43 TYR A 49 -1 O VAL A 47 N HIS A 36 SHEET 4 A 9 GLN A 2 GLY A 8 1 N ILE A 6 O ILE A 46 SHEET 5 A 9 LYS A 72 SER A 81 1 O SER A 76 N LEU A 7 SHEET 6 A 9 ALA A 169 GLU A 173 -1 O VAL A 172 N GLY A 80 SHEET 7 A 9 LEU A 142 SER A 149 1 N VAL A 146 O SER A 170 SHEET 8 A 9 LEU A 91 GLN A 99 1 N VAL A 98 O SER A 149 SHEET 9 A 9 PHE A 120 GLU A 122 -1 O ILE A 121 N LEU A 97 SHEET 1 B 8 GLU A 26 LEU A 30 0 SHEET 2 B 8 ASN A 33 TYR A 40 -1 O PHE A 35 N ILE A 28 SHEET 3 B 8 LYS A 43 TYR A 49 -1 O VAL A 47 N HIS A 36 SHEET 4 B 8 GLN A 2 GLY A 8 1 N ILE A 6 O ILE A 46 SHEET 5 B 8 LYS A 72 SER A 81 1 O SER A 76 N LEU A 7 SHEET 6 B 8 CYS A 190 ASP A 198 1 O CYS A 191 N PHE A 75 SHEET 7 B 8 LEU A 91 GLN A 99 -1 N LEU A 92 O ARG A 194 SHEET 8 B 8 PHE A 120 GLU A 122 -1 O ILE A 121 N LEU A 97 SITE 1 AC1 17 ALA A 9 MET A 10 ILE A 52 VAL A 78 SITE 2 AC1 17 ALA A 79 GLY A 80 LEU A 104 PHE A 153 SITE 3 AC1 17 VAL A 154 VAL A 172 GLU A 173 MET A 174 SITE 4 AC1 17 GLU A 175 SER A 197 ASP A 198 PHE A 208 SITE 5 AC1 17 HOH A 565 SITE 1 AC2 5 VAL A 23 ASP A 24 LYS A 185 HOH A 409 SITE 2 AC2 5 HOH A 607 CRYST1 157.732 157.732 157.732 90.00 90.00 90.00 I 4 3 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006340 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006340 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006340 0.00000