HEADER HYDROLASE 04-JUN-12 4FGM TITLE CRYSTAL STRUCTURE OF THE AMINOPEPTIDASE N FAMILY PROTEIN Q5QTY1 FROM TITLE 2 IDIOMARINA LOIHIENSIS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TITLE 3 TARGET ILR60. COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOPEPTIDASE N FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.11.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: IDIOMARINA LOIHIENSIS L2TR; SOURCE 3 ORGANISM_TAXID: 283942; SOURCE 4 STRAIN: ATCC BAA-735 / DSM 15497 / L2-TR; SOURCE 5 GENE: IL1258; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21_NESG, ILR60-21.5 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, NORTHEAST STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, NESG, PEPTIDASE_M61, PDZ, PDZ_2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.VOROBIEV,M.SU,T.TONG,E.KOHAN,D.WANG,J.K.EVERETT,T.B.ACTON, AUTHOR 2 G.T.MONTELIONE,L.TONG,J.F.HUNT,NORTHEAST STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (NESG) REVDAT 2 25-OCT-17 4FGM 1 REMARK REVDAT 1 01-AUG-12 4FGM 0 JRNL AUTH S.VOROBIEV,M.SU,T.TONG,E.KOHAN,D.WANG,J.K.EVERETT,T.B.ACTON, JRNL AUTH 2 G.T.MONTELIONE,L.TONG,J.F.HUNT JRNL TITL CRYSTAL STRUCTURE OF THE AMINOPEPTIDASE N FAMILY PROTEIN JRNL TITL 2 Q5QTY1 FROM IDIOMARINA LOIHIENSIS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.2_869 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 69442 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 3489 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.3320 - 6.9900 1.00 2657 130 0.1970 0.1770 REMARK 3 2 6.9900 - 5.5520 1.00 2628 161 0.1920 0.1990 REMARK 3 3 5.5520 - 4.8520 1.00 2642 138 0.1490 0.1880 REMARK 3 4 4.8520 - 4.4090 1.00 2643 111 0.1330 0.1440 REMARK 3 5 4.4090 - 4.0930 1.00 2679 130 0.1500 0.1890 REMARK 3 6 4.0930 - 3.8520 1.00 2610 132 0.1640 0.1490 REMARK 3 7 3.8520 - 3.6590 1.00 2641 169 0.1770 0.1950 REMARK 3 8 3.6590 - 3.5000 1.00 2628 139 0.1800 0.1950 REMARK 3 9 3.5000 - 3.3650 1.00 2634 144 0.1970 0.2200 REMARK 3 10 3.3650 - 3.2490 1.00 2600 158 0.1910 0.2220 REMARK 3 11 3.2490 - 3.1470 1.00 2670 115 0.2100 0.2280 REMARK 3 12 3.1470 - 3.0570 1.00 2625 158 0.1980 0.2310 REMARK 3 13 3.0570 - 2.9770 1.00 2656 124 0.1980 0.2080 REMARK 3 14 2.9770 - 2.9040 1.00 2632 133 0.2180 0.2740 REMARK 3 15 2.9040 - 2.8380 1.00 2671 130 0.2110 0.2290 REMARK 3 16 2.8380 - 2.7780 1.00 2608 152 0.2190 0.3110 REMARK 3 17 2.7780 - 2.7220 1.00 2604 160 0.2290 0.2700 REMARK 3 18 2.7220 - 2.6710 1.00 2645 156 0.2540 0.2890 REMARK 3 19 2.6710 - 2.6230 1.00 2641 122 0.2510 0.3050 REMARK 3 20 2.6230 - 2.5790 1.00 2663 125 0.2490 0.2230 REMARK 3 21 2.5790 - 2.5370 1.00 2617 126 0.2480 0.2700 REMARK 3 22 2.5370 - 2.4980 1.00 2649 163 0.2670 0.2710 REMARK 3 23 2.4980 - 2.4610 1.00 2649 122 0.2860 0.3360 REMARK 3 24 2.4610 - 2.4270 1.00 2633 152 0.2960 0.2690 REMARK 3 25 2.4270 - 2.3940 1.00 2628 139 0.3330 0.3560 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 40.97 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.680 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.12000 REMARK 3 B22 (A**2) : 2.12000 REMARK 3 B33 (A**2) : -4.23900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4841 REMARK 3 ANGLE : 1.387 6580 REMARK 3 CHIRALITY : 0.104 717 REMARK 3 PLANARITY : 0.007 844 REMARK 3 DIHEDRAL : 15.504 1742 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4FGM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000072875. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97900 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 2.394 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.70 REMARK 200 R MERGE FOR SHELL (I) : 0.97800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.050 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 100MM NACL, 5MM DTT, REMARK 280 0.02% NAN3, 10MM TRIS-HCL (PH 7.5). RESERVOIR SOLUTION: 45% PEG/ REMARK 280 TACSIMATE PH 6.8 (HAMPTON RESEARCH HR2-092), 45% SILVER BULLET REMARK 280 (HAMPTON RESEARCH HR2-096, G11), 0.1 M SODIUM CITRATE., REMARK 280 MICROBATCH CRYSTALLIZATION UNDER OIL, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 146.75600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.37800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 146.75600 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 73.37800 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 146.75600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 73.37800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 146.75600 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 73.37800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER ACCORDING TO AGGREGATION SCREENING REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 81470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -160.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 119.65700 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 220.13400 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 119.65700 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 220.13400 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 588 REMARK 465 GLY A 589 REMARK 465 LEU A 590 REMARK 465 GLU A 591 REMARK 465 HIS A 592 REMARK 465 HIS A 593 REMARK 465 HIS A 594 REMARK 465 HIS A 595 REMARK 465 HIS A 596 REMARK 465 HIS A 597 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 477 CG CD CE NZ REMARK 470 GLU A 480 CG CD OE1 OE2 REMARK 470 GLN A 481 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 96 -77.62 -122.16 REMARK 500 ALA A 97 140.38 -179.20 REMARK 500 ALA A 133 59.25 -153.54 REMARK 500 PRO A 149 -35.08 -37.70 REMARK 500 ILE A 281 -27.25 107.29 REMARK 500 LEU A 357 30.88 -98.65 REMARK 500 THR A 360 -66.69 -122.53 REMARK 500 ASN A 366 -155.63 -135.14 REMARK 500 ARG A 553 -126.08 57.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 277 NE2 REMARK 620 2 GLU A 307 OE1 102.5 REMARK 620 3 HIS A 273 NE2 95.0 109.3 REMARK 620 4 MAE A 601 O2 100.9 136.9 104.1 REMARK 620 5 MAE A 601 O1 129.3 85.2 130.0 52.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAE A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NESG-ILR60 RELATED DB: TARGETTRACK DBREF 4FGM A 1 589 UNP Q5QTY1 Q5QTY1_IDILO 1 589 SEQADV 4FGM LEU A 590 UNP Q5QTY1 EXPRESSION TAG SEQADV 4FGM GLU A 591 UNP Q5QTY1 EXPRESSION TAG SEQADV 4FGM HIS A 592 UNP Q5QTY1 EXPRESSION TAG SEQADV 4FGM HIS A 593 UNP Q5QTY1 EXPRESSION TAG SEQADV 4FGM HIS A 594 UNP Q5QTY1 EXPRESSION TAG SEQADV 4FGM HIS A 595 UNP Q5QTY1 EXPRESSION TAG SEQADV 4FGM HIS A 596 UNP Q5QTY1 EXPRESSION TAG SEQADV 4FGM HIS A 597 UNP Q5QTY1 EXPRESSION TAG SEQRES 1 A 597 MSE ILE ALA TYR ASP ILE THR PRO ILE ASP LEU HIS GLY SEQRES 2 A 597 HIS LEU PHE ASN VAL SER LEU THR ILE GLU GLN THR ASN SEQRES 3 A 597 ASP GLU GLN GLU LEU TRP LEU PRO ASN TRP ILE PRO GLY SEQRES 4 A 597 SER TYR LEU ILE ARG ASP PHE SER LYS HIS ILE ILE GLY SEQRES 5 A 597 LEU HIS ALA GLU SER ASN GLY LEU SER LEU PRO VAL LYS SEQRES 6 A 597 GLN ILE SER LYS ASN ARG TRP GLN LEU ALA ARG SER LYS SEQRES 7 A 597 HIS PRO VAL THR VAL HIS TYR GLN VAL TYR ALA TRP ASP SEQRES 8 A 597 LEU SER VAL ARG SER ALA TYR LEU ASP GLN PHE GLN GLY SEQRES 9 A 597 PHE PHE ASN ASN THR SER LEU CYS LEU ALA VAL GLU GLY SEQRES 10 A 597 GLN THR ASP LEU PRO CYS GLU LEU HIS LEU HIS ALA PRO SEQRES 11 A 597 PRO GLU ALA PRO LEU TRP LYS VAL ALA THR GLY MSE PRO SEQRES 12 A 597 ARG LYS SER GLY GLN PRO HIS SER TRP GLY CYS PHE ARG SEQRES 13 A 597 ALA ASP ASN TYR ASP ALA LEU ILE ASP TYR PRO PHE LEU SEQRES 14 A 597 ILE GLY ASP LEU THR ILE GLU GLU PHE ILE ALA HIS GLY SEQRES 15 A 597 ILE LYS HIS SER LEU VAL LEU SER GLY ARG HIS TYR ALA SEQRES 16 A 597 ASP THR SER ARG ILE THR ALA ASP LEU ALA LYS ILE CYS SEQRES 17 A 597 GLU THR GLN ILE SER LEU PHE GLU GLU ALA PRO PHE GLN SEQRES 18 A 597 SER TYR THR PHE LEU THR MSE VAL VAL GLY ASN GLY PHE SEQRES 19 A 597 GLY GLY LEU GLU HIS ARG ASN SER THR ALA LEU LEU CYS SEQRES 20 A 597 SER ARG LYS ASP LEU ILE SER ALA HIS GLN TYR GLU MSE SEQRES 21 A 597 ASN ASP ASN TYR GLN THR PHE LEU SER LEU CYS CYS HIS SEQRES 22 A 597 GLU TYR PHE HIS SER TRP ASN ILE LYS THR LEU LYS PRO SEQRES 23 A 597 LYS ALA PHE LEU PRO TYR GLN LEU GLU LYS GLU SER TYR SEQRES 24 A 597 THR GLU GLN LEU TRP PHE TYR GLU GLY MSE THR SER TYR SEQRES 25 A 597 PHE ASP ASP TYR LEU LEU HIS THR SER GLY ILE ILE ASP SEQRES 26 A 597 GLU LYS ARG TYR LEU LYS LEU LEU GLY ASP THR LEU SER SEQRES 27 A 597 ARG VAL GLU ARG GLY ALA GLY GLN TYR GLN GLN SER VAL SEQRES 28 A 597 THR GLU SER SER PHE LEU ALA TRP THR LYS PHE TYR GLN SEQRES 29 A 597 GLN ASN GLU ASN ALA PRO ASN SER ILE VAL SER TYR TYR SEQRES 30 A 597 ALA LYS GLY ALA LEU ILE ALA LEU SER LEU ASP LEU MSE SEQRES 31 A 597 LEU ARG LEU GLN SER ASP HIS LYS LEU THR LEU ALA ARG SEQRES 32 A 597 VAL MSE LYS GLU LEU TRP HIS GLU PHE GLY LYS THR SER SEQRES 33 A 597 ILE GLY THR ALA ASP ASP THR VAL ILE ASN TRP LEU ASN SEQRES 34 A 597 GLN TYR PRO GLY ILE ASP ILE SER ASP PHE LEU LYS ASP SEQRES 35 A 597 ALA LEU TYR ASN LYS GLU SER LEU SER LEU VAL GLU LEU SEQRES 36 A 597 LEU GLN ASN PHE GLY VAL MSE VAL GLN LYS GLN VAL PRO SEQRES 37 A 597 VAL ASP ASP ASN SER VAL GLY GLY LYS ALA SER GLU GLN SEQRES 38 A 597 PRO ALA ARG VAL ASN PHE GLY ALA LYS TYR LYS ALA SER SEQRES 39 A 597 PRO GLN GLY LEU ASP VAL LEU ASN VAL TYR HIS ASP GLU SEQRES 40 A 597 SER ALA TYR HIS ALA GLY LEU SER ALA GLY ASP LYS ILE SEQRES 41 A 597 ILE ALA ILE ASP HIS LEU GLN ALA THR GLU GLN SER VAL SEQRES 42 A 597 LYS ARG ILE LEU GLU ARG TYR ILE PRO GLY ASP THR VAL SEQRES 43 A 597 THR ILE HIS ALA PHE ARG ARG ASP GLU LEU MSE THR LEU SEQRES 44 A 597 GLU LEU THR TRP GLN GLU PRO ALA LYS SER SER TYR VAL SEQRES 45 A 597 LEU SER VAL GLU GLN PRO ASP LYS LEU LYS GLY TRP LEU SEQRES 46 A 597 THR PRO SER GLY LEU GLU HIS HIS HIS HIS HIS HIS MODRES 4FGM MSE A 1 MET SELENOMETHIONINE MODRES 4FGM MSE A 142 MET SELENOMETHIONINE MODRES 4FGM MSE A 228 MET SELENOMETHIONINE MODRES 4FGM MSE A 260 MET SELENOMETHIONINE MODRES 4FGM MSE A 309 MET SELENOMETHIONINE MODRES 4FGM MSE A 390 MET SELENOMETHIONINE MODRES 4FGM MSE A 405 MET SELENOMETHIONINE MODRES 4FGM MSE A 462 MET SELENOMETHIONINE MODRES 4FGM MSE A 557 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 142 8 HET MSE A 228 8 HET MSE A 260 8 HET MSE A 309 8 HET MSE A 390 8 HET MSE A 405 8 HET MSE A 462 8 HET MSE A 557 8 HET MAE A 601 8 HET ZN A 602 1 HETNAM MSE SELENOMETHIONINE HETNAM MAE MALEIC ACID HETNAM ZN ZINC ION FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 MAE C4 H4 O4 FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *222(H2 O) HELIX 1 1 ASP A 45 LYS A 48 5 4 HELIX 2 2 ASN A 107 CYS A 112 1 6 HELIX 3 3 ASN A 159 ILE A 164 1 6 HELIX 4 4 ASP A 196 GLU A 216 1 21 HELIX 5 5 LYS A 250 LEU A 252 5 3 HELIX 6 6 ASN A 261 SER A 278 1 18 HELIX 7 7 PRO A 286 LEU A 290 5 5 HELIX 8 8 GLN A 302 GLU A 307 1 6 HELIX 9 9 GLU A 307 SER A 321 1 15 HELIX 10 10 ASP A 325 GLY A 343 1 19 HELIX 11 11 ALA A 344 GLN A 348 5 5 HELIX 12 12 SER A 350 LEU A 357 1 8 HELIX 13 13 ASN A 368 ILE A 373 1 6 HELIX 14 14 TYR A 377 SER A 395 1 19 HELIX 15 15 THR A 400 GLY A 413 1 14 HELIX 16 16 ASP A 422 GLN A 430 1 9 HELIX 17 17 ILE A 436 ASN A 446 1 11 HELIX 18 18 LEU A 452 ASN A 458 1 7 HELIX 19 19 GLU A 507 GLY A 513 1 7 HELIX 20 20 SER A 532 GLU A 538 1 7 HELIX 21 21 GLN A 577 LEU A 581 5 5 SHEET 1 A 7 LEU A 60 LEU A 62 0 SHEET 2 A 7 ILE A 50 SER A 57 -1 N SER A 57 O LEU A 60 SHEET 3 A 7 VAL A 81 TYR A 88 -1 O GLN A 86 N ILE A 51 SHEET 4 A 7 LEU A 15 ILE A 22 -1 N VAL A 18 O TYR A 85 SHEET 5 A 7 ILE A 2 ASP A 10 -1 N THR A 7 O ASN A 17 SHEET 6 A 7 CYS A 123 LEU A 127 1 O HIS A 126 N TYR A 4 SHEET 7 A 7 GLY A 153 ALA A 157 -1 O PHE A 155 N LEU A 125 SHEET 1 B 4 VAL A 64 SER A 68 0 SHEET 2 B 4 ARG A 71 LEU A 74 -1 O GLN A 73 N LYS A 65 SHEET 3 B 4 GLU A 30 TRP A 32 -1 N LEU A 31 O TRP A 72 SHEET 4 B 4 ALA A 114 VAL A 115 -1 O ALA A 114 N TRP A 32 SHEET 1 C 5 TRP A 90 ASP A 91 0 SHEET 2 C 5 ALA A 97 LEU A 99 -1 O ALA A 97 N ASP A 91 SHEET 3 C 5 GLN A 103 PHE A 106 -1 O PHE A 105 N TYR A 98 SHEET 4 C 5 PHE A 168 GLY A 171 -1 O ILE A 170 N GLY A 104 SHEET 5 C 5 LYS A 137 THR A 140 -1 N LYS A 137 O GLY A 171 SHEET 1 D 5 THR A 174 ALA A 180 0 SHEET 2 D 5 ILE A 183 SER A 190 -1 O HIS A 185 N PHE A 178 SHEET 3 D 5 SER A 222 VAL A 230 1 O PHE A 225 N SER A 186 SHEET 4 D 5 SER A 242 SER A 248 1 O LEU A 245 N LEU A 226 SHEET 5 D 5 GLY A 235 GLU A 238 -1 N GLY A 235 O LEU A 246 SHEET 1 E 2 VAL A 461 GLN A 466 0 SHEET 2 E 2 SER A 570 VAL A 575 -1 O SER A 574 N MSE A 462 SHEET 1 F 4 ALA A 489 SER A 494 0 SHEET 2 F 4 GLY A 497 VAL A 503 -1 O ASP A 499 N LYS A 492 SHEET 3 F 4 LYS A 519 ILE A 523 -1 O ILE A 520 N LEU A 498 SHEET 4 F 4 LEU A 526 GLN A 527 -1 O LEU A 526 N ILE A 523 SHEET 1 G 5 ALA A 489 SER A 494 0 SHEET 2 G 5 GLY A 497 VAL A 503 -1 O ASP A 499 N LYS A 492 SHEET 3 G 5 LYS A 519 ILE A 523 -1 O ILE A 520 N LEU A 498 SHEET 4 G 5 THR A 545 ARG A 552 -1 O HIS A 549 N ILE A 521 SHEET 5 G 5 GLU A 555 THR A 562 -1 O MSE A 557 N ALA A 550 LINK C MSE A 1 N ILE A 2 1555 1555 1.33 LINK C GLY A 141 N MSE A 142 1555 1555 1.33 LINK C MSE A 142 N PRO A 143 1555 1555 1.35 LINK C THR A 227 N MSE A 228 1555 1555 1.33 LINK C MSE A 228 N VAL A 229 1555 1555 1.33 LINK C GLU A 259 N MSE A 260 1555 1555 1.33 LINK C MSE A 260 N ASN A 261 1555 1555 1.33 LINK C GLY A 308 N MSE A 309 1555 1555 1.34 LINK C MSE A 309 N THR A 310 1555 1555 1.33 LINK C LEU A 389 N MSE A 390 1555 1555 1.33 LINK C MSE A 390 N LEU A 391 1555 1555 1.33 LINK C VAL A 404 N MSE A 405 1555 1555 1.33 LINK C MSE A 405 N LYS A 406 1555 1555 1.33 LINK C VAL A 461 N MSE A 462 1555 1555 1.33 LINK C MSE A 462 N VAL A 463 1555 1555 1.33 LINK C LEU A 556 N MSE A 557 1555 1555 1.32 LINK C MSE A 557 N THR A 558 1555 1555 1.33 LINK NE2 HIS A 277 ZN ZN A 602 1555 1555 2.00 LINK OE1 GLU A 307 ZN ZN A 602 1555 1555 2.20 LINK NE2 HIS A 273 ZN ZN A 602 1555 1555 2.26 LINK O2 MAE A 601 ZN ZN A 602 1555 1555 2.26 LINK O1 MAE A 601 ZN ZN A 602 1555 1555 2.63 CISPEP 1 LEU A 290 PRO A 291 0 0.27 SITE 1 AC1 11 GLY A 39 GLY A 236 GLU A 238 HIS A 273 SITE 2 AC1 11 HIS A 277 GLU A 307 TYR A 377 ZN A 602 SITE 3 AC1 11 HOH A 754 HOH A 786 HOH A 848 SITE 1 AC2 4 HIS A 273 HIS A 277 GLU A 307 MAE A 601 CRYST1 119.657 119.657 220.134 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008357 0.004825 0.000000 0.00000 SCALE2 0.000000 0.009650 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004543 0.00000 HETATM 1 N MSE A 1 55.177 50.843 81.773 1.00 65.40 N ANISOU 1 N MSE A 1 9349 7772 7729 -406 177 204 N HETATM 2 CA MSE A 1 54.819 49.398 81.825 1.00 59.80 C ANISOU 2 CA MSE A 1 8561 7096 7066 -372 201 193 C HETATM 3 C MSE A 1 56.068 48.593 82.150 1.00 52.53 C ANISOU 3 C MSE A 1 7585 6216 6158 -406 221 182 C HETATM 4 O MSE A 1 57.149 48.878 81.643 1.00 56.09 O ANISOU 4 O MSE A 1 8042 6686 6584 -464 222 180 O HETATM 5 CB MSE A 1 54.226 48.956 80.482 1.00 63.54 C ANISOU 5 CB MSE A 1 9016 7581 7546 -368 203 189 C HETATM 6 CG MSE A 1 55.202 48.283 79.512 1.00 81.56 C ANISOU 6 CG MSE A 1 11255 9907 9827 -416 217 179 C HETATM 7 SE MSE A 1 55.345 46.366 79.811 1.00 68.15 SE ANISOU 7 SE MSE A 1 9455 8256 8183 -389 244 161 SE HETATM 8 CE MSE A 1 53.538 46.104 80.446 1.00 97.53 C ANISOU 8 CE MSE A 1 13175 11944 11938 -308 238 169 C