HEADER TRANSFERASE/TRANSFERASE INHIBITOR 13-JUN-12 4FKV TITLE CRYSTAL STRUCTURE OF THE CDK2 IN COMPLEX WITH OXINDOLE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIN-DEPENDENT KINASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CELL DIVISION PROTEIN KINASE 2, P33 PROTEIN KINASE; COMPND 5 EC: 2.7.11.22; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CDK2, CDKN2; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HIGH-FIVE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFB1 KEYWDS ALPHA AND BETA PROTEIN (A+B), TRANSFERASE-TRANSFERASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.N.KANG,J.A.STUCKEY REVDAT 2 22-MAY-13 4FKV 1 SOURCE REVDAT 1 08-MAY-13 4FKV 0 JRNL AUTH Y.N.KANG,J.A.STUCKEY JRNL TITL CRYSTAL STRUCTURE OF THE CDK2 IN COMPLEX WITH OXINDOLE JRNL TITL 2 INHIBITOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 31290 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1575 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 16 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.81 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2828 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2034 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2702 REMARK 3 BIN R VALUE (WORKING SET) : 0.2019 REMARK 3 BIN FREE R VALUE : 0.2373 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.46 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 126 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2219 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 213 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.32220 REMARK 3 B22 (A**2) : 5.92520 REMARK 3 B33 (A**2) : -7.24730 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.10 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2409 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3293 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1116 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 47 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 364 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2409 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 312 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2981 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.98 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.33 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.74 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|0 - 11} REMARK 3 ORIGIN FOR THE GROUP (A): -19.2962 -20.2038 -10.6435 REMARK 3 T TENSOR REMARK 3 T11: -0.0211 T22: -0.0005 REMARK 3 T33: 0.0210 T12: -0.0370 REMARK 3 T13: 0.0111 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.1608 L22: 0.0475 REMARK 3 L33: 0.0693 L12: 0.1033 REMARK 3 L13: -0.2542 L23: -0.0857 REMARK 3 S TENSOR REMARK 3 S11: -0.0006 S12: -0.0027 S13: -0.0038 REMARK 3 S21: 0.0007 S22: 0.0020 S23: 0.0028 REMARK 3 S31: 0.0016 S32: -0.0035 S33: -0.0013 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|12 - 36} REMARK 3 ORIGIN FOR THE GROUP (A): -18.5805 -16.3635 -12.7806 REMARK 3 T TENSOR REMARK 3 T11: -0.0587 T22: 0.0186 REMARK 3 T33: 0.0401 T12: -0.0114 REMARK 3 T13: 0.0394 T23: -0.0616 REMARK 3 L TENSOR REMARK 3 L11: 1.0435 L22: 0.0185 REMARK 3 L33: 0.0000 L12: 0.6970 REMARK 3 L13: 0.1346 L23: 0.3319 REMARK 3 S TENSOR REMARK 3 S11: 0.0010 S12: 0.0065 S13: -0.0105 REMARK 3 S21: 0.0092 S22: 0.0090 S23: 0.0072 REMARK 3 S31: -0.0046 S32: -0.0124 S33: -0.0100 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|37 - 75} REMARK 3 ORIGIN FOR THE GROUP (A): -24.9447 -6.4432 -20.3347 REMARK 3 T TENSOR REMARK 3 T11: -0.0030 T22: 0.0129 REMARK 3 T33: -0.0020 T12: -0.0203 REMARK 3 T13: -0.0340 T23: -0.0278 REMARK 3 L TENSOR REMARK 3 L11: 0.3780 L22: 0.0133 REMARK 3 L33: 0.0000 L12: 0.1809 REMARK 3 L13: 0.3830 L23: 0.4742 REMARK 3 S TENSOR REMARK 3 S11: -0.0018 S12: 0.0011 S13: -0.0086 REMARK 3 S21: 0.0048 S22: 0.0156 S23: 0.0395 REMARK 3 S31: -0.0045 S32: -0.0036 S33: -0.0138 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|76 - 137} REMARK 3 ORIGIN FOR THE GROUP (A): -7.6999 -1.4212 -15.3544 REMARK 3 T TENSOR REMARK 3 T11: -0.0119 T22: -0.0439 REMARK 3 T33: -0.0231 T12: 0.0043 REMARK 3 T13: -0.0151 T23: -0.0297 REMARK 3 L TENSOR REMARK 3 L11: 0.6927 L22: 2.4813 REMARK 3 L33: 0.2873 L12: 0.2314 REMARK 3 L13: -0.2367 L23: 0.2140 REMARK 3 S TENSOR REMARK 3 S11: 0.0009 S12: 0.0655 S13: -0.0832 REMARK 3 S21: 0.0036 S22: 0.0118 S23: -0.0925 REMARK 3 S31: 0.0247 S32: -0.0916 S33: -0.0127 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|138 - 163} REMARK 3 ORIGIN FOR THE GROUP (A): -14.2312 -1.8673 -15.3665 REMARK 3 T TENSOR REMARK 3 T11: 0.0276 T22: -0.0386 REMARK 3 T33: 0.0148 T12: 0.0043 REMARK 3 T13: 0.0020 T23: -0.0549 REMARK 3 L TENSOR REMARK 3 L11: 0.0382 L22: 0.5361 REMARK 3 L33: 0.0007 L12: 0.4311 REMARK 3 L13: -0.3981 L23: 0.1478 REMARK 3 S TENSOR REMARK 3 S11: 0.0008 S12: -0.0049 S13: -0.0107 REMARK 3 S21: -0.0102 S22: 0.0095 S23: 0.0024 REMARK 3 S31: 0.0115 S32: -0.0266 S33: -0.0104 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {A|164 - 271} REMARK 3 ORIGIN FOR THE GROUP (A): -9.2613 16.8894 -7.0580 REMARK 3 T TENSOR REMARK 3 T11: 0.0039 T22: -0.0523 REMARK 3 T33: -0.0311 T12: -0.0029 REMARK 3 T13: 0.0103 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: 1.4247 L22: 1.4596 REMARK 3 L33: 0.8441 L12: -0.3566 REMARK 3 L13: -0.4708 L23: 0.1054 REMARK 3 S TENSOR REMARK 3 S11: 0.0627 S12: -0.0481 S13: 0.0967 REMARK 3 S21: 0.1681 S22: -0.0208 S23: -0.0316 REMARK 3 S31: -0.0435 S32: -0.0007 S33: -0.0419 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {A|272 - 298} REMARK 3 ORIGIN FOR THE GROUP (A): -0.4895 6.2473 -21.1661 REMARK 3 T TENSOR REMARK 3 T11: 0.0159 T22: -0.0530 REMARK 3 T33: 0.0152 T12: 0.0077 REMARK 3 T13: 0.0400 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.5519 L22: 0.7911 REMARK 3 L33: 0.4906 L12: 0.1430 REMARK 3 L13: 0.0603 L23: -0.0312 REMARK 3 S TENSOR REMARK 3 S11: 0.0017 S12: 0.0266 S13: -0.0292 REMARK 3 S21: -0.0257 S22: 0.0042 S23: -0.0533 REMARK 3 S31: -0.0147 S32: -0.0296 S33: -0.0059 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4FKV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUN-12. REMARK 100 THE RCSB ID CODE IS RCSB073025. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31365 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.43400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-20% PEG3350, 0.2M AMMONIUM ACETATE, REMARK 280 0.1M HEPES, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K, REMARK 280 PH 7.8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.82850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.04800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.95700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.04800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.82850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.95700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 38 REMARK 465 THR A 39 REMARK 465 GLU A 40 REMARK 465 THR A 41 REMARK 465 GLU A 42 REMARK 465 ALA A 151 REMARK 465 PHE A 152 REMARK 465 GLY A 153 REMARK 465 VAL A 154 REMARK 465 PRO A 155 REMARK 465 VAL A 156 REMARK 465 ARG A 157 REMARK 465 THR A 158 REMARK 465 TYR A 159 REMARK 465 THR A 160 REMARK 465 HIS A 161 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ACE A 0 CH3 REMARK 470 GLU A 12 CG CD OE1 OE2 REMARK 470 THR A 14 OG1 CG2 REMARK 470 TYR A 15 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 25 CG CD1 CD2 REMARK 470 LYS A 34 CG CD CE NZ REMARK 470 ARG A 36 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 44 CG1 CG2 REMARK 470 GLU A 73 CG CD OE1 OE2 REMARK 470 ASN A 74 CG OD1 ND2 REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 GLU A 162 CG CD OE1 OE2 REMARK 470 LYS A 178 CG CD CE NZ REMARK 470 ARG A 297 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 74 2.74 59.78 REMARK 500 ARG A 126 -16.39 82.80 REMARK 500 ASP A 127 50.75 -145.56 REMARK 500 PHE A 146 -125.25 -66.21 REMARK 500 TYR A 179 56.15 -115.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 61K A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EK3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF APO CDK2 REMARK 900 RELATED ID: 4EK4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CDK2 IN COMPLEX WITH AMINOPYRAZOLE REMARK 900 INHIBITOR REMARK 900 RELATED ID: 4EK5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CDK2 IN COMPLEX WITH AMINOPYRAZOLE REMARK 900 INHIBITOR REMARK 900 RELATED ID: 4EK6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CDK2 IN COMPLEX WITH AMINOPYRAZOLE REMARK 900 INHIBITOR REMARK 900 RELATED ID: 4EK8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CDK2 IN COMPLEX WITH REMARK 900 THIAZOLYLPYRIMIDINE INHIBITOR REMARK 900 RELATED ID: 4FKG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CDK2 IN COMPLEX WITH AMINOPYRAZOLE REMARK 900 INHIBITOR REMARK 900 RELATED ID: 4FKI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CDK2 IN COMPLEX WITH AMINOPYRAZOLE REMARK 900 INHIBITOR REMARK 900 RELATED ID: 4FKJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CDK2 IN COMPLEX WITH AMINOPYRAZOLE REMARK 900 INHIBITOR REMARK 900 RELATED ID: 4FKL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CDK2 IN COMPLEX WITH REMARK 900 THIAZOLYLPYRIMIDINE INHIBITOR REMARK 900 RELATED ID: 4FKO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CDK2 IN COMPLEX WITH REMARK 900 THIAZOLYLPYRIMIDINE INHIBITOR REMARK 900 RELATED ID: 4FKP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CDK2 IN COMPLEX WITH OXINDOLE REMARK 900 INHIBITOR REMARK 900 RELATED ID: 4FKQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CDK2 IN COMPLEX WITH OXINDOLE REMARK 900 INHIBITOR REMARK 900 RELATED ID: 4FKR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CDK2 IN COMPLEX WITH OXINDOLE REMARK 900 INHIBITOR REMARK 900 RELATED ID: 4FKS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CDK2 IN COMPLEX WITH OXINDOLE REMARK 900 INHIBITOR REMARK 900 RELATED ID: 4FKT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CDK2 IN COMPLEX WITH OXINDOLE REMARK 900 INHIBITOR REMARK 900 RELATED ID: 4FKU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CDK2 IN COMPLEX WITH OXINDOLE REMARK 900 INHIBITOR REMARK 900 RELATED ID: 4FKW RELATED DB: PDB DBREF 4FKV A 1 298 UNP P24941 CDK2_HUMAN 1 298 SEQADV 4FKV ACE A 0 UNP P24941 ACETYLATION SEQRES 1 A 299 ACE MET GLU ASN PHE GLN LYS VAL GLU LYS ILE GLY GLU SEQRES 2 A 299 GLY THR TYR GLY VAL VAL TYR LYS ALA ARG ASN LYS LEU SEQRES 3 A 299 THR GLY GLU VAL VAL ALA LEU LYS LYS ILE ARG LEU ASP SEQRES 4 A 299 THR GLU THR GLU GLY VAL PRO SER THR ALA ILE ARG GLU SEQRES 5 A 299 ILE SER LEU LEU LYS GLU LEU ASN HIS PRO ASN ILE VAL SEQRES 6 A 299 LYS LEU LEU ASP VAL ILE HIS THR GLU ASN LYS LEU TYR SEQRES 7 A 299 LEU VAL PHE GLU PHE LEU HIS GLN ASP LEU LYS LYS PHE SEQRES 8 A 299 MET ASP ALA SER ALA LEU THR GLY ILE PRO LEU PRO LEU SEQRES 9 A 299 ILE LYS SER TYR LEU PHE GLN LEU LEU GLN GLY LEU ALA SEQRES 10 A 299 PHE CYS HIS SER HIS ARG VAL LEU HIS ARG ASP LEU LYS SEQRES 11 A 299 PRO GLN ASN LEU LEU ILE ASN THR GLU GLY ALA ILE LYS SEQRES 12 A 299 LEU ALA ASP PHE GLY LEU ALA ARG ALA PHE GLY VAL PRO SEQRES 13 A 299 VAL ARG THR TYR THR HIS GLU VAL VAL THR LEU TRP TYR SEQRES 14 A 299 ARG ALA PRO GLU ILE LEU LEU GLY CYS LYS TYR TYR SER SEQRES 15 A 299 THR ALA VAL ASP ILE TRP SER LEU GLY CYS ILE PHE ALA SEQRES 16 A 299 GLU MET VAL THR ARG ARG ALA LEU PHE PRO GLY ASP SER SEQRES 17 A 299 GLU ILE ASP GLN LEU PHE ARG ILE PHE ARG THR LEU GLY SEQRES 18 A 299 THR PRO ASP GLU VAL VAL TRP PRO GLY VAL THR SER MET SEQRES 19 A 299 PRO ASP TYR LYS PRO SER PHE PRO LYS TRP ALA ARG GLN SEQRES 20 A 299 ASP PHE SER LYS VAL VAL PRO PRO LEU ASP GLU ASP GLY SEQRES 21 A 299 ARG SER LEU LEU SER GLN MET LEU HIS TYR ASP PRO ASN SEQRES 22 A 299 LYS ARG ILE SER ALA LYS ALA ALA LEU ALA HIS PRO PHE SEQRES 23 A 299 PHE GLN ASP VAL THR LYS PRO VAL PRO HIS LEU ARG LEU HET ACE A 0 2 HET 61K A 301 32 HET GOL A 302 6 HETNAM ACE ACETYL GROUP HETNAM 61K (3Z)-N-[2-(1H-IMIDAZOL-4-YL)ETHYL]-2-OXO-3-[2-(4- HETNAM 2 61K SULFAMOYLPHENYL)HYDRAZINYLIDENE]-2,3-DIHYDRO-1H- HETNAM 3 61K INDOLE-5-CARBOXAMIDE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 ACE C2 H4 O FORMUL 2 61K C20 H19 N7 O4 S FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *213(H2 O) HELIX 1 1 PRO A 45 LYS A 56 1 12 HELIX 2 2 LEU A 87 SER A 94 1 8 HELIX 3 3 PRO A 100 HIS A 121 1 22 HELIX 4 4 LYS A 129 GLN A 131 5 3 HELIX 5 5 ALA A 170 LEU A 175 1 6 HELIX 6 6 THR A 182 ARG A 199 1 18 HELIX 7 7 SER A 207 GLY A 220 1 14 HELIX 8 8 GLY A 229 MET A 233 5 5 HELIX 9 9 ASP A 247 VAL A 252 1 6 HELIX 10 10 ASP A 256 LEU A 267 1 12 HELIX 11 11 SER A 276 ALA A 282 1 7 HELIX 12 12 HIS A 283 GLN A 287 5 5 SHEET 1 A 5 PHE A 4 GLU A 12 0 SHEET 2 A 5 GLY A 16 ASN A 23 -1 O LYS A 20 N GLU A 8 SHEET 3 A 5 VAL A 29 ILE A 35 -1 O LEU A 32 N TYR A 19 SHEET 4 A 5 LYS A 75 GLU A 81 -1 O LEU A 76 N ILE A 35 SHEET 5 A 5 LEU A 66 THR A 72 -1 N ILE A 70 O TYR A 77 SHEET 1 B 3 GLN A 85 ASP A 86 0 SHEET 2 B 3 LEU A 133 ILE A 135 -1 O ILE A 135 N GLN A 85 SHEET 3 B 3 ILE A 141 LEU A 143 -1 O LYS A 142 N LEU A 134 LINK C ACE A 0 N MET A 1 1555 1555 1.33 CISPEP 1 PRO A 253 PRO A 254 0 6.85 SITE 1 AC1 15 GLY A 11 GLU A 12 GLY A 13 ALA A 31 SITE 2 AC1 15 LYS A 33 PHE A 80 GLU A 81 PHE A 82 SITE 3 AC1 15 LEU A 83 HIS A 84 GLN A 85 ASP A 86 SITE 4 AC1 15 LYS A 89 LEU A 134 ASP A 145 SITE 1 AC2 8 ASN A 136 THR A 137 GLU A 138 GLU A 257 SITE 2 AC2 8 ARG A 260 SER A 261 HOH A 438 HOH A 569 CRYST1 53.657 71.914 72.096 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018637 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013905 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013870 0.00000 HETATM 1 C ACE A 0 -27.887 -21.384 -16.370 1.00 53.28 C ANISOU 1 C ACE A 0 6501 6812 6929 -406 103 4 C HETATM 2 O ACE A 0 -26.771 -21.543 -16.874 1.00 53.38 O ANISOU 2 O ACE A 0 6519 6822 6942 -409 104 -3 O