HEADER TRANSCRIPTION REGULATOR/INHIBITOR 15-JUN-12 4FLP TITLE CRYSTAL STRUCTURE OF THE FIRST BROMODOMAIN OF HUMAN BRDT IN COMPLEX TITLE 2 WITH THE INHIBITOR JQ1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN TESTIS-SPECIFIC PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: FIRST BROMODOMAIN (UNP RESIDUES 21-137); COMPND 5 SYNONYM: CANCER/TESTIS ANTIGEN 9, CT9, RING3-LIKE PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRDT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS BRDT, BROMODOMAIN CONTAINING PROTEIN TESTIS SPECIFIC, NUCLEUS, KEYWDS 2 TRANSCRIPTION, TRANSCRIPTION REGULATION, STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, SGC, BROMODOMAIN, TRANSCRIPTION REGULATOR-INHIBITOR KEYWDS 4 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.FILIPPAKOPOULOS,S.PICAUD,J.QI,I.FELLETAR,P.CANNING,J.MUNIZ,F.VON AUTHOR 2 DELFT,C.BOUNTRA,C.H.ARROWSMITH,A.EDWARDS,J.BRADNER,S.KNAPP, AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 13-SEP-23 4FLP 1 REMARK SEQADV LINK REVDAT 2 29-AUG-12 4FLP 1 JRNL REVDAT 1 11-JUL-12 4FLP 0 JRNL AUTH M.M.MATZUK,M.R.MCKEOWN,P.FILIPPAKOPOULOS,Q.LI,L.MA,J.E.AGNO, JRNL AUTH 2 M.E.LEMIEUX,S.PICAUD,R.N.YU,J.QI,S.KNAPP,J.E.BRADNER JRNL TITL SMALL-MOLECULE INHIBITION OF BRDT FOR MALE CONTRACEPTION. JRNL REF CELL(CAMBRIDGE,MASS.) V. 150 673 2012 JRNL REFN ISSN 0092-8674 JRNL PMID 22901802 JRNL DOI 10.1016/J.CELL.2012.06.045 REMARK 2 REMARK 2 RESOLUTION. 2.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 13419 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 708 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.23 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.29 REMARK 3 REFLECTION IN BIN (WORKING SET) : 978 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.3560 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.4990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1730 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 59 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.42000 REMARK 3 B22 (A**2) : -0.49000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.271 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.217 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.167 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.026 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1881 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1234 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2572 ; 1.660 ; 2.006 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3014 ; 0.923 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 220 ; 5.893 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 82 ;37.596 ;25.244 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 317 ;18.006 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;11.536 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 272 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2052 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 355 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1093 ; 4.170 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 421 ; 1.259 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1774 ; 6.335 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 788 ; 9.847 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 795 ;11.799 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 29 A 134 REMARK 3 ORIGIN FOR THE GROUP (A): 10.0889 -14.6915 -26.5138 REMARK 3 T TENSOR REMARK 3 T11: 0.0432 T22: 0.1797 REMARK 3 T33: 0.0807 T12: 0.0047 REMARK 3 T13: 0.0225 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 1.3124 L22: 0.9486 REMARK 3 L33: 0.9864 L12: 0.2977 REMARK 3 L13: -0.4159 L23: -0.3516 REMARK 3 S TENSOR REMARK 3 S11: -0.1329 S12: 0.0226 S13: -0.1662 REMARK 3 S21: 0.0185 S22: 0.0593 S23: -0.0879 REMARK 3 S31: 0.0860 S32: -0.0381 S33: 0.0736 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 29 B 135 REMARK 3 ORIGIN FOR THE GROUP (A): 12.8874 -5.7402 -53.9038 REMARK 3 T TENSOR REMARK 3 T11: 0.1253 T22: 0.2480 REMARK 3 T33: 0.0276 T12: -0.0420 REMARK 3 T13: -0.0468 T23: -0.0209 REMARK 3 L TENSOR REMARK 3 L11: 0.1063 L22: 1.5854 REMARK 3 L33: 3.3429 L12: -0.3148 REMARK 3 L13: -0.2415 L23: -0.5831 REMARK 3 S TENSOR REMARK 3 S11: 0.0510 S12: 0.0435 S13: -0.0077 REMARK 3 S21: -0.1856 S22: -0.0281 S23: 0.0118 REMARK 3 S31: 0.1909 S32: -0.2902 S33: -0.0229 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4FLP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000073055. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14655 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 37.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : 0.11000 REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.65500 REMARK 200 R SYM FOR SHELL (I) : 0.65500 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: ENSEMBLE OF 2RFJ, 2OSS, 2OUO, 2GRC, 2OO1, 3DAI, REMARK 200 3D7C, 3DWY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BISTRIS PROPANE PH 8.0, 0.15M REMARK 280 KSCN, 25% PEG3350, 10% ETGLY , VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 18.70000 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.34500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 18.70000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.34500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 K K B 202 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 307 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 19 REMARK 465 MET A 20 REMARK 465 ASN A 21 REMARK 465 THR A 22 REMARK 465 LYS A 23 REMARK 465 LYS A 24 REMARK 465 ASN A 25 REMARK 465 GLY A 26 REMARK 465 ARG A 27 REMARK 465 LEU A 28 REMARK 465 GLN A 135 REMARK 465 GLU A 136 REMARK 465 GLU A 137 REMARK 465 SER B 19 REMARK 465 MET B 20 REMARK 465 ASN B 21 REMARK 465 THR B 22 REMARK 465 LYS B 23 REMARK 465 LYS B 24 REMARK 465 ASN B 25 REMARK 465 GLY B 26 REMARK 465 ARG B 27 REMARK 465 LEU B 28 REMARK 465 GLU B 136 REMARK 465 GLU B 137 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 30 CG OD1 ND2 REMARK 470 LYS A 86 CD CE NZ REMARK 470 LYS A 90 CE NZ REMARK 470 GLN A 132 CD OE1 NE2 REMARK 470 THR B 29 OG1 CG2 REMARK 470 ASN B 30 CG OD1 ND2 REMARK 470 LYS B 37 CE NZ REMARK 470 LYS B 41 CE NZ REMARK 470 LYS B 60 CD CE NZ REMARK 470 GLN B 62 CG CD OE1 NE2 REMARK 470 LYS B 71 CG CD CE NZ REMARK 470 LYS B 86 CG CD CE NZ REMARK 470 LYS B 90 CG CD CE NZ REMARK 470 GLU B 93 CG CD OE1 OE2 REMARK 470 LYS B 124 CD CE NZ REMARK 470 GLN B 128 CD OE1 NE2 REMARK 470 GLN B 135 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 105 CB CYS A 105 SG -0.104 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 38 -63.06 -101.04 REMARK 500 LEU A 63 76.54 -117.18 REMARK 500 ASN A 72 73.58 -119.76 REMARK 500 VAL B 38 -66.32 -107.51 REMARK 500 ASN B 72 68.32 -119.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 202 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 106 O REMARK 620 2 LEU B 107 O 67.2 REMARK 620 3 ASN B 109 O 78.4 85.2 REMARK 620 4 HOH B 307 O 141.0 102.4 63.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE JQ1 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE JQ1 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2RFJ RELATED DB: PDB REMARK 900 HOLO STRUCTURE OF HUMAN BRDT FIRST BROMODOMAIN DBREF 4FLP A 21 137 UNP Q58F21 BRDT_HUMAN 21 137 DBREF 4FLP B 21 136 UNP Q58F21 BRDT_HUMAN 21 137 SEQADV 4FLP SER A 19 UNP Q58F21 EXPRESSION TAG SEQADV 4FLP MET A 20 UNP Q58F21 EXPRESSION TAG SEQADV 4FLP SER B 19 UNP Q58F21 EXPRESSION TAG SEQADV 4FLP MET B 20 UNP Q58F21 EXPRESSION TAG SEQRES 1 A 119 SER MET ASN THR LYS LYS ASN GLY ARG LEU THR ASN GLN SEQRES 2 A 119 LEU GLN TYR LEU GLN LYS VAL VAL LEU LYS ASP LEU TRP SEQRES 3 A 119 LYS HIS SER PHE SER TRP PRO PHE GLN ARG PRO VAL ASP SEQRES 4 A 119 ALA VAL LYS LEU GLN LEU PRO ASP TYR TYR THR ILE ILE SEQRES 5 A 119 LYS ASN PRO MET ASP LEU ASN THR ILE LYS LYS ARG LEU SEQRES 6 A 119 GLU ASN LYS TYR TYR ALA LYS ALA SER GLU CYS ILE GLU SEQRES 7 A 119 ASP PHE ASN THR MET PHE SER ASN CYS TYR LEU TYR ASN SEQRES 8 A 119 LYS PRO GLY ASP ASP ILE VAL LEU MET ALA GLN ALA LEU SEQRES 9 A 119 GLU LYS LEU PHE MET GLN LYS LEU SER GLN MET PRO GLN SEQRES 10 A 119 GLU GLU SEQRES 1 B 119 SER MET ASN THR LYS LYS ASN GLY ARG LEU THR ASN GLN SEQRES 2 B 119 LEU GLN TYR LEU GLN LYS VAL VAL LEU LYS ASP LEU TRP SEQRES 3 B 119 LYS HIS SER PHE SER TRP PRO PHE GLN ARG PRO VAL ASP SEQRES 4 B 119 ALA VAL LYS LEU GLN LEU PRO ASP TYR TYR THR ILE ILE SEQRES 5 B 119 LYS ASN PRO MET ASP LEU ASN THR ILE LYS LYS ARG LEU SEQRES 6 B 119 GLU ASN LYS TYR TYR ALA LYS ALA SER GLU CYS ILE GLU SEQRES 7 B 119 ASP PHE ASN THR MET PHE SER ASN CYS TYR LEU TYR ASN SEQRES 8 B 119 LYS PRO GLY ASP ASP ILE VAL LEU MET ALA GLN ALA LEU SEQRES 9 B 119 GLU LYS LEU PHE MET GLN LYS LEU SER GLN MET PRO GLN SEQRES 10 B 119 GLU GLU HET JQ1 A 201 31 HET JQ1 B 201 31 HET K B 202 1 HETNAM JQ1 (6S)-6-(2-TERT-BUTOXY-2-OXOETHYL)-4-(4-CHLOROPHENYL)-2, HETNAM 2 JQ1 3,9-TRIMETHYL-6,7-DIHYDROTHIENO[3,2-F][1,2, HETNAM 3 JQ1 4]TRIAZOLO[4,3-A][1,4]DIAZEPIN-10-IUM HETNAM K POTASSIUM ION FORMUL 3 JQ1 2(C23 H26 CL N4 O2 S 1+) FORMUL 5 K K 1+ FORMUL 6 HOH *59(H2 O) HELIX 1 1 THR A 29 VAL A 38 1 10 HELIX 2 2 VAL A 38 HIS A 46 1 9 HELIX 3 3 SER A 49 GLN A 53 5 5 HELIX 4 4 ASP A 57 GLN A 62 1 6 HELIX 5 5 ASP A 65 ILE A 70 1 6 HELIX 6 6 ASP A 75 ASN A 85 1 11 HELIX 7 7 LYS A 90 ASN A 109 1 20 HELIX 8 8 ASP A 113 GLN A 132 1 20 HELIX 9 9 ASN B 30 VAL B 38 1 9 HELIX 10 10 VAL B 38 HIS B 46 1 9 HELIX 11 11 SER B 47 GLN B 53 5 7 HELIX 12 12 ASP B 57 GLN B 62 1 6 HELIX 13 13 ASP B 65 ILE B 70 1 6 HELIX 14 14 ASP B 75 LYS B 86 1 12 HELIX 15 15 LYS B 90 ASN B 109 1 20 HELIX 16 16 ASP B 113 GLN B 132 1 20 LINK O TYR B 106 K K B 202 1555 1555 2.66 LINK O LEU B 107 K K B 202 1555 1555 2.77 LINK O ASN B 109 K K B 202 1555 1555 2.67 LINK K K B 202 O HOH B 307 1555 1555 3.29 SITE 1 AC1 11 TRP A 50 PRO A 51 LEU A 61 LEU A 63 SITE 2 AC1 11 THR A 68 ASN A 109 ASP A 114 ILE A 115 SITE 3 AC1 11 HOH A 301 HOH A 345 SER B 47 SITE 1 AC2 9 SER A 47 TRP B 50 PRO B 51 VAL B 56 SITE 2 AC2 9 LEU B 61 LEU B 63 ASN B 109 ASP B 114 SITE 3 AC2 9 ILE B 115 SITE 1 AC3 3 TYR B 106 LEU B 107 ASN B 109 CRYST1 37.400 57.420 128.690 90.00 90.00 90.00 P 21 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026738 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017416 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007771 0.00000