HEADER TRANSFERASE 20-JUN-12 4FOA TITLE CRYSTAL STRUCTURE OF THE MTB THYA IN COMPLEX WITH 5-FLUORO-DUMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE SYNTHASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: TS, TSASE; COMPND 5 EC: 2.1.1.45; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: MT2834, MTV002.29C, RV2764C, THYA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS STRUCTURAL GENOMICS, TB STRUCTURAL GENOMICS CONSORTIUM, TBSGC, KEYWDS 2 TRANSFERASE, THYMIDYLATE SYNTHASE EXPDTA X-RAY DIFFRACTION AUTHOR M.C.M.REDDY,J.B.BRUNING,J.C.SACCHETTINI,TB STRUCTURAL GENOMICS AUTHOR 2 CONSORTIUM (TBSGC) REVDAT 3 13-SEP-23 4FOA 1 REMARK SEQADV REVDAT 2 15-NOV-17 4FOA 1 REMARK REVDAT 1 07-AUG-13 4FOA 0 JRNL AUTH M.C.M.REDDY,J.B.BRUNING,J.C.SACCHETTINI JRNL TITL CRYSTAL STRUCTURE OF BINARY AND TERNARY COMPLEXES OF JRNL TITL 2 THYMIDYLATE SYNTHASE (THYA) FROM MYCOBACTERIUM TUBERCULOSIS: JRNL TITL 3 INSIGHTS INTO THE SELECTIVITY AND MODE OF INHIBITION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.4_486 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 63581 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 3234 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.2378 - 6.3876 0.98 2778 141 0.1875 0.2029 REMARK 3 2 6.3876 - 5.0778 0.99 2715 161 0.1528 0.1872 REMARK 3 3 5.0778 - 4.4382 0.97 2671 120 0.1222 0.1413 REMARK 3 4 4.4382 - 4.0335 0.96 2618 139 0.1292 0.1702 REMARK 3 5 4.0335 - 3.7449 0.97 2640 156 0.1540 0.2055 REMARK 3 6 3.7449 - 3.5245 0.98 2686 131 0.1646 0.2036 REMARK 3 7 3.5245 - 3.3482 0.97 2625 148 0.1617 0.2184 REMARK 3 8 3.3482 - 3.2026 0.97 2639 144 0.1678 0.2025 REMARK 3 9 3.2026 - 3.0795 0.97 2636 158 0.1699 0.2227 REMARK 3 10 3.0795 - 2.9733 0.97 2642 143 0.1769 0.2410 REMARK 3 11 2.9733 - 2.8804 0.97 2633 141 0.1759 0.2173 REMARK 3 12 2.8804 - 2.7981 0.97 2604 150 0.1773 0.2532 REMARK 3 13 2.7981 - 2.7245 0.97 2622 136 0.1755 0.2474 REMARK 3 14 2.7245 - 2.6581 0.96 2614 143 0.1885 0.2536 REMARK 3 15 2.6581 - 2.5977 0.96 2596 158 0.1782 0.2479 REMARK 3 16 2.5977 - 2.5424 0.96 2614 130 0.1816 0.2221 REMARK 3 17 2.5424 - 2.4916 0.96 2594 124 0.1754 0.2506 REMARK 3 18 2.4916 - 2.4446 0.96 2590 132 0.1871 0.2460 REMARK 3 19 2.4446 - 2.4010 0.96 2624 123 0.1939 0.2756 REMARK 3 20 2.4010 - 2.3603 0.95 2566 153 0.1924 0.2541 REMARK 3 21 2.3603 - 2.3222 0.95 2559 141 0.1953 0.2909 REMARK 3 22 2.3222 - 2.2865 0.95 2575 135 0.1941 0.2709 REMARK 3 23 2.2865 - 2.2530 0.92 2506 127 0.1906 0.2446 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 38.57 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.33530 REMARK 3 B22 (A**2) : 0.14370 REMARK 3 B33 (A**2) : 1.19160 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -8.67850 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 8721 REMARK 3 ANGLE : 1.051 11927 REMARK 3 CHIRALITY : 0.074 1273 REMARK 3 PLANARITY : 0.005 1525 REMARK 3 DIHEDRAL : 13.935 3184 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 0:260) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3605 10.8783 43.3501 REMARK 3 T TENSOR REMARK 3 T11: 0.1984 T22: 0.0732 REMARK 3 T33: 0.1658 T12: -0.0007 REMARK 3 T13: 0.0068 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 1.5269 L22: 0.4067 REMARK 3 L33: 0.5527 L12: 0.1532 REMARK 3 L13: 0.0295 L23: 0.5526 REMARK 3 S TENSOR REMARK 3 S11: 0.1077 S12: -0.1596 S13: -0.0433 REMARK 3 S21: 0.0844 S22: -0.0763 S23: -0.0899 REMARK 3 S31: 0.0817 S32: 0.0307 S33: -0.0512 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESID 1:261) REMARK 3 ORIGIN FOR THE GROUP (A): -24.6083 3.2621 28.4493 REMARK 3 T TENSOR REMARK 3 T11: 0.1976 T22: 0.1717 REMARK 3 T33: 0.2336 T12: -0.0018 REMARK 3 T13: 0.0217 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 1.1353 L22: 0.3695 REMARK 3 L33: 1.3333 L12: 0.2085 REMARK 3 L13: 0.1917 L23: 0.1272 REMARK 3 S TENSOR REMARK 3 S11: 0.0432 S12: 0.0031 S13: -0.1319 REMARK 3 S21: 0.0258 S22: -0.0639 S23: 0.0840 REMARK 3 S31: 0.0320 S32: -0.1721 S33: 0.0202 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN C AND RESID 1:260) REMARK 3 ORIGIN FOR THE GROUP (A): 42.5282 -2.3834 7.8224 REMARK 3 T TENSOR REMARK 3 T11: 0.1994 T22: 0.2332 REMARK 3 T33: 0.2125 T12: -0.0096 REMARK 3 T13: -0.0192 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.7711 L22: 0.5501 REMARK 3 L33: 1.1973 L12: -0.1640 REMARK 3 L13: -0.0488 L23: 0.1563 REMARK 3 S TENSOR REMARK 3 S11: -0.0071 S12: 0.0361 S13: -0.1150 REMARK 3 S21: -0.0639 S22: -0.0181 S23: 0.0806 REMARK 3 S31: -0.0528 S32: 0.1608 S33: 0.0197 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN D AND RESID 1:261) REMARK 3 ORIGIN FOR THE GROUP (A): 33.0285 16.5063 25.6872 REMARK 3 T TENSOR REMARK 3 T11: 0.1938 T22: 0.2616 REMARK 3 T33: 0.1509 T12: -0.0455 REMARK 3 T13: -0.0390 T23: -0.0743 REMARK 3 L TENSOR REMARK 3 L11: 2.1581 L22: 0.7010 REMARK 3 L33: 2.5188 L12: -0.0154 REMARK 3 L13: -1.5380 L23: 0.5855 REMARK 3 S TENSOR REMARK 3 S11: 0.0794 S12: -0.5274 S13: 0.0140 REMARK 3 S21: -0.1773 S22: -0.1315 S23: 0.1693 REMARK 3 S31: -0.4761 S32: 0.2541 S33: 0.0437 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4FOA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000073148. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97172 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK HIGH-RESOLUTION REMARK 200 DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63595 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : 0.05100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 31.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.21600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3QJ7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULFATE, 0.1 M IMIDAZOLE REMARK 280 6.4, 5MM SPERMINE, PH 7, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 91.39800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.30050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 91.39800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.30050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 261 REMARK 465 ALA A 262 REMARK 465 VAL A 263 REMARK 465 SER B 0 REMARK 465 ARG B 21 REMARK 465 THR B 22 REMARK 465 GLY B 23 REMARK 465 ALA B 262 REMARK 465 VAL B 263 REMARK 465 SER C 0 REMARK 465 VAL C 261 REMARK 465 ALA C 262 REMARK 465 VAL C 263 REMARK 465 SER D 0 REMARK 465 ALA D 262 REMARK 465 VAL D 263 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 0 OG REMARK 470 ARG A 21 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 82 CG CD OE1 OE2 REMARK 470 ASP A 86 CG OD1 OD2 REMARK 470 GLU A 139 CG CD OE1 OE2 REMARK 470 ASP B 20 CG OD1 OD2 REMARK 470 GLU B 82 CG CD OE1 OE2 REMARK 470 SER B 105 OG REMARK 470 GLU B 107 CG CD OE1 OE2 REMARK 470 GLU B 139 CD OE1 OE2 REMARK 470 VAL B 261 CG1 CG2 REMARK 470 SER C 19 OG REMARK 470 GLU C 82 CG CD OE1 OE2 REMARK 470 ARG D 9 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 27 CG CD NE CZ NH1 NH2 REMARK 470 SER D 67 OG REMARK 470 GLU D 82 CG CD OE1 OE2 REMARK 470 THR D 87 OG1 CG2 REMARK 470 LEU D 143 CG CD1 CD2 REMARK 470 ARG D 217 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 219 CG CD OE1 NE2 REMARK 470 GLU D 244 CG CD OE1 OE2 REMARK 470 LYS D 258 CD CE NZ REMARK 470 VAL D 261 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR C 242 OD1 ASP C 245 2.17 REMARK 500 O HOH C 415 O HOH C 524 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 20 42.55 -105.86 REMARK 500 ARG A 21 -37.45 70.33 REMARK 500 TYR A 94 -58.69 -26.04 REMARK 500 SER A 100 52.59 -164.18 REMARK 500 ASP A 122 57.59 -147.24 REMARK 500 SER B 19 158.62 178.79 REMARK 500 TYR B 94 -78.31 -5.65 REMARK 500 SER B 100 54.33 -152.30 REMARK 500 ASP B 122 62.29 -153.34 REMARK 500 ALA B 256 151.96 -45.88 REMARK 500 TYR C 94 -81.50 -1.26 REMARK 500 SER C 100 39.19 -150.50 REMARK 500 ASP C 122 58.63 -145.38 REMARK 500 LYS D 48 141.82 174.65 REMARK 500 LYS D 48 140.84 175.36 REMARK 500 TYR D 94 -67.57 -21.88 REMARK 500 SER D 100 53.90 -154.55 REMARK 500 ASP D 122 65.38 -154.58 REMARK 500 PRO D 228 -177.82 -69.74 REMARK 500 ALA D 259 145.45 -176.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 UFP A 601 REMARK 610 UFP B 301 REMARK 610 UFP C 301 REMARK 610 UFP D 301 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UFP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UFP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UFP C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UFP D 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QJ7 RELATED DB: PDB REMARK 900 THYA IN COMPLEX WITH DUMP REMARK 900 RELATED ID: 4FOG RELATED DB: PDB REMARK 900 THYA IN COMPLEX WITH 5-FLUORO-DUMP AND 5-METHYLTETRAHYDROFOLIC ACID REMARK 900 RELATED ID: 4FOX RELATED DB: PDB REMARK 900 THYA IN COMPLEX WITH UMP AND RALTITREXED DBREF 4FOA A 1 263 UNP P67044 TYSY_MYCTU 1 263 DBREF 4FOA B 1 263 UNP P67044 TYSY_MYCTU 1 263 DBREF 4FOA C 1 263 UNP P67044 TYSY_MYCTU 1 263 DBREF 4FOA D 1 263 UNP P67044 TYSY_MYCTU 1 263 SEQADV 4FOA SER A 0 UNP P67044 EXPRESSION TAG SEQADV 4FOA SER B 0 UNP P67044 EXPRESSION TAG SEQADV 4FOA SER C 0 UNP P67044 EXPRESSION TAG SEQADV 4FOA SER D 0 UNP P67044 EXPRESSION TAG SEQRES 1 A 264 SER MET THR PRO TYR GLU ASP LEU LEU ARG PHE VAL LEU SEQRES 2 A 264 GLU THR GLY THR PRO LYS SER ASP ARG THR GLY THR GLY SEQRES 3 A 264 THR ARG SER LEU PHE GLY GLN GLN MET ARG TYR ASP LEU SEQRES 4 A 264 SER ALA GLY PHE PRO LEU LEU THR THR LYS LYS VAL HIS SEQRES 5 A 264 PHE LYS SER VAL ALA TYR GLU LEU LEU TRP PHE LEU ARG SEQRES 6 A 264 GLY ASP SER ASN ILE GLY TRP LEU HIS GLU HIS GLY VAL SEQRES 7 A 264 THR ILE TRP ASP GLU TRP ALA SER ASP THR GLY GLU LEU SEQRES 8 A 264 GLY PRO ILE TYR GLY VAL GLN TRP ARG SER TRP PRO ALA SEQRES 9 A 264 PRO SER GLY GLU HIS ILE ASP GLN ILE SER ALA ALA LEU SEQRES 10 A 264 ASP LEU LEU ARG THR ASP PRO ASP SER ARG ARG ILE ILE SEQRES 11 A 264 VAL SER ALA TRP ASN VAL GLY GLU ILE GLU ARG MET ALA SEQRES 12 A 264 LEU PRO PRO CYS HIS ALA PHE PHE GLN PHE TYR VAL ALA SEQRES 13 A 264 ASP GLY ARG LEU SER CYS GLN LEU TYR GLN ARG SER ALA SEQRES 14 A 264 ASP LEU PHE LEU GLY VAL PRO PHE ASN ILE ALA SER TYR SEQRES 15 A 264 ALA LEU LEU THR HIS MET MET ALA ALA GLN ALA GLY LEU SEQRES 16 A 264 SER VAL GLY GLU PHE ILE TRP THR GLY GLY ASP CYS HIS SEQRES 17 A 264 ILE TYR ASP ASN HIS VAL GLU GLN VAL ARG LEU GLN LEU SEQRES 18 A 264 SER ARG GLU PRO ARG PRO TYR PRO LYS LEU LEU LEU ALA SEQRES 19 A 264 ASP ARG ASP SER ILE PHE GLU TYR THR TYR GLU ASP ILE SEQRES 20 A 264 VAL VAL LYS ASN TYR ASP PRO HIS PRO ALA ILE LYS ALA SEQRES 21 A 264 PRO VAL ALA VAL SEQRES 1 B 264 SER MET THR PRO TYR GLU ASP LEU LEU ARG PHE VAL LEU SEQRES 2 B 264 GLU THR GLY THR PRO LYS SER ASP ARG THR GLY THR GLY SEQRES 3 B 264 THR ARG SER LEU PHE GLY GLN GLN MET ARG TYR ASP LEU SEQRES 4 B 264 SER ALA GLY PHE PRO LEU LEU THR THR LYS LYS VAL HIS SEQRES 5 B 264 PHE LYS SER VAL ALA TYR GLU LEU LEU TRP PHE LEU ARG SEQRES 6 B 264 GLY ASP SER ASN ILE GLY TRP LEU HIS GLU HIS GLY VAL SEQRES 7 B 264 THR ILE TRP ASP GLU TRP ALA SER ASP THR GLY GLU LEU SEQRES 8 B 264 GLY PRO ILE TYR GLY VAL GLN TRP ARG SER TRP PRO ALA SEQRES 9 B 264 PRO SER GLY GLU HIS ILE ASP GLN ILE SER ALA ALA LEU SEQRES 10 B 264 ASP LEU LEU ARG THR ASP PRO ASP SER ARG ARG ILE ILE SEQRES 11 B 264 VAL SER ALA TRP ASN VAL GLY GLU ILE GLU ARG MET ALA SEQRES 12 B 264 LEU PRO PRO CYS HIS ALA PHE PHE GLN PHE TYR VAL ALA SEQRES 13 B 264 ASP GLY ARG LEU SER CYS GLN LEU TYR GLN ARG SER ALA SEQRES 14 B 264 ASP LEU PHE LEU GLY VAL PRO PHE ASN ILE ALA SER TYR SEQRES 15 B 264 ALA LEU LEU THR HIS MET MET ALA ALA GLN ALA GLY LEU SEQRES 16 B 264 SER VAL GLY GLU PHE ILE TRP THR GLY GLY ASP CYS HIS SEQRES 17 B 264 ILE TYR ASP ASN HIS VAL GLU GLN VAL ARG LEU GLN LEU SEQRES 18 B 264 SER ARG GLU PRO ARG PRO TYR PRO LYS LEU LEU LEU ALA SEQRES 19 B 264 ASP ARG ASP SER ILE PHE GLU TYR THR TYR GLU ASP ILE SEQRES 20 B 264 VAL VAL LYS ASN TYR ASP PRO HIS PRO ALA ILE LYS ALA SEQRES 21 B 264 PRO VAL ALA VAL SEQRES 1 C 264 SER MET THR PRO TYR GLU ASP LEU LEU ARG PHE VAL LEU SEQRES 2 C 264 GLU THR GLY THR PRO LYS SER ASP ARG THR GLY THR GLY SEQRES 3 C 264 THR ARG SER LEU PHE GLY GLN GLN MET ARG TYR ASP LEU SEQRES 4 C 264 SER ALA GLY PHE PRO LEU LEU THR THR LYS LYS VAL HIS SEQRES 5 C 264 PHE LYS SER VAL ALA TYR GLU LEU LEU TRP PHE LEU ARG SEQRES 6 C 264 GLY ASP SER ASN ILE GLY TRP LEU HIS GLU HIS GLY VAL SEQRES 7 C 264 THR ILE TRP ASP GLU TRP ALA SER ASP THR GLY GLU LEU SEQRES 8 C 264 GLY PRO ILE TYR GLY VAL GLN TRP ARG SER TRP PRO ALA SEQRES 9 C 264 PRO SER GLY GLU HIS ILE ASP GLN ILE SER ALA ALA LEU SEQRES 10 C 264 ASP LEU LEU ARG THR ASP PRO ASP SER ARG ARG ILE ILE SEQRES 11 C 264 VAL SER ALA TRP ASN VAL GLY GLU ILE GLU ARG MET ALA SEQRES 12 C 264 LEU PRO PRO CYS HIS ALA PHE PHE GLN PHE TYR VAL ALA SEQRES 13 C 264 ASP GLY ARG LEU SER CYS GLN LEU TYR GLN ARG SER ALA SEQRES 14 C 264 ASP LEU PHE LEU GLY VAL PRO PHE ASN ILE ALA SER TYR SEQRES 15 C 264 ALA LEU LEU THR HIS MET MET ALA ALA GLN ALA GLY LEU SEQRES 16 C 264 SER VAL GLY GLU PHE ILE TRP THR GLY GLY ASP CYS HIS SEQRES 17 C 264 ILE TYR ASP ASN HIS VAL GLU GLN VAL ARG LEU GLN LEU SEQRES 18 C 264 SER ARG GLU PRO ARG PRO TYR PRO LYS LEU LEU LEU ALA SEQRES 19 C 264 ASP ARG ASP SER ILE PHE GLU TYR THR TYR GLU ASP ILE SEQRES 20 C 264 VAL VAL LYS ASN TYR ASP PRO HIS PRO ALA ILE LYS ALA SEQRES 21 C 264 PRO VAL ALA VAL SEQRES 1 D 264 SER MET THR PRO TYR GLU ASP LEU LEU ARG PHE VAL LEU SEQRES 2 D 264 GLU THR GLY THR PRO LYS SER ASP ARG THR GLY THR GLY SEQRES 3 D 264 THR ARG SER LEU PHE GLY GLN GLN MET ARG TYR ASP LEU SEQRES 4 D 264 SER ALA GLY PHE PRO LEU LEU THR THR LYS LYS VAL HIS SEQRES 5 D 264 PHE LYS SER VAL ALA TYR GLU LEU LEU TRP PHE LEU ARG SEQRES 6 D 264 GLY ASP SER ASN ILE GLY TRP LEU HIS GLU HIS GLY VAL SEQRES 7 D 264 THR ILE TRP ASP GLU TRP ALA SER ASP THR GLY GLU LEU SEQRES 8 D 264 GLY PRO ILE TYR GLY VAL GLN TRP ARG SER TRP PRO ALA SEQRES 9 D 264 PRO SER GLY GLU HIS ILE ASP GLN ILE SER ALA ALA LEU SEQRES 10 D 264 ASP LEU LEU ARG THR ASP PRO ASP SER ARG ARG ILE ILE SEQRES 11 D 264 VAL SER ALA TRP ASN VAL GLY GLU ILE GLU ARG MET ALA SEQRES 12 D 264 LEU PRO PRO CYS HIS ALA PHE PHE GLN PHE TYR VAL ALA SEQRES 13 D 264 ASP GLY ARG LEU SER CYS GLN LEU TYR GLN ARG SER ALA SEQRES 14 D 264 ASP LEU PHE LEU GLY VAL PRO PHE ASN ILE ALA SER TYR SEQRES 15 D 264 ALA LEU LEU THR HIS MET MET ALA ALA GLN ALA GLY LEU SEQRES 16 D 264 SER VAL GLY GLU PHE ILE TRP THR GLY GLY ASP CYS HIS SEQRES 17 D 264 ILE TYR ASP ASN HIS VAL GLU GLN VAL ARG LEU GLN LEU SEQRES 18 D 264 SER ARG GLU PRO ARG PRO TYR PRO LYS LEU LEU LEU ALA SEQRES 19 D 264 ASP ARG ASP SER ILE PHE GLU TYR THR TYR GLU ASP ILE SEQRES 20 D 264 VAL VAL LYS ASN TYR ASP PRO HIS PRO ALA ILE LYS ALA SEQRES 21 D 264 PRO VAL ALA VAL HET UFP A 601 20 HET UFP B 301 20 HET UFP C 301 20 HET UFP D 301 20 HETNAM UFP 5-FLUORO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE FORMUL 5 UFP 4(C9 H12 F N2 O8 P) FORMUL 9 HOH *620(H2 O) HELIX 1 1 THR A 2 GLY A 15 1 14 HELIX 2 2 SER A 39 GLY A 41 5 3 HELIX 3 3 HIS A 51 ARG A 64 1 14 HELIX 4 4 ILE A 69 HIS A 75 1 7 HELIX 5 5 TRP A 80 ALA A 84 5 5 HELIX 6 6 ILE A 93 SER A 100 1 8 HELIX 7 7 ASP A 110 ASP A 122 1 13 HELIX 8 8 ASN A 134 MET A 141 5 8 HELIX 9 9 GLY A 173 GLY A 193 1 21 HELIX 10 10 HIS A 212 SER A 221 1 10 HELIX 11 11 SER A 237 TYR A 241 5 5 HELIX 12 12 THR A 242 GLU A 244 5 3 HELIX 13 13 THR B 2 GLY B 15 1 14 HELIX 14 14 SER B 39 GLY B 41 5 3 HELIX 15 15 HIS B 51 GLY B 65 1 15 HELIX 16 16 ILE B 69 GLU B 74 1 6 HELIX 17 17 TRP B 80 ALA B 84 5 5 HELIX 18 18 ILE B 93 SER B 100 1 8 HELIX 19 19 ASP B 110 ASP B 122 1 13 HELIX 20 20 ASN B 134 MET B 141 5 8 HELIX 21 21 GLY B 173 GLY B 193 1 21 HELIX 22 22 HIS B 212 SER B 221 1 10 HELIX 23 23 SER B 237 TYR B 241 5 5 HELIX 24 24 THR B 242 GLU B 244 5 3 HELIX 25 25 THR C 2 GLY C 15 1 14 HELIX 26 26 HIS C 51 ARG C 64 1 14 HELIX 27 27 ILE C 69 HIS C 75 1 7 HELIX 28 28 TRP C 80 ALA C 84 5 5 HELIX 29 29 ILE C 93 SER C 100 1 8 HELIX 30 30 ASP C 110 ASP C 122 1 13 HELIX 31 31 GLU C 137 MET C 141 5 5 HELIX 32 32 GLY C 173 GLY C 193 1 21 HELIX 33 33 HIS C 212 SER C 221 1 10 HELIX 34 34 SER C 237 TYR C 241 5 5 HELIX 35 35 THR C 242 GLU C 244 5 3 HELIX 36 36 THR D 2 GLY D 15 1 14 HELIX 37 37 SER D 39 GLY D 41 5 3 HELIX 38 38 HIS D 51 ARG D 64 1 14 HELIX 39 39 ILE D 69 HIS D 75 1 7 HELIX 40 40 TRP D 80 ALA D 84 5 5 HELIX 41 41 ILE D 93 SER D 100 1 8 HELIX 42 42 ASP D 110 ASP D 122 1 13 HELIX 43 43 GLU D 137 MET D 141 5 5 HELIX 44 44 GLY D 173 GLY D 193 1 21 HELIX 45 45 HIS D 212 SER D 221 1 10 HELIX 46 46 SER D 237 TYR D 241 5 5 HELIX 47 47 THR D 242 GLU D 244 5 3 SHEET 1 A 6 THR A 16 LYS A 18 0 SHEET 2 A 6 THR A 26 ASP A 37 -1 O SER A 28 N THR A 16 SHEET 3 A 6 SER A 195 TYR A 209 -1 O CYS A 206 N LEU A 29 SHEET 4 A 6 ARG A 158 ASP A 169 1 N LEU A 159 O SER A 195 SHEET 5 A 6 HIS A 147 ALA A 155 -1 N TYR A 153 O SER A 160 SHEET 6 A 6 ILE A 129 SER A 131 -1 N VAL A 130 O PHE A 150 SHEET 1 B 2 TRP A 101 PRO A 102 0 SHEET 2 B 2 HIS A 108 ILE A 109 -1 O ILE A 109 N TRP A 101 SHEET 1 C 4 ILE A 246 LYS A 249 0 SHEET 2 C 4 LYS A 229 ALA A 233 -1 N LYS A 229 O LYS A 249 SHEET 3 C 4 LYS D 229 ALA D 233 -1 O LEU D 232 N LEU A 232 SHEET 4 C 4 ILE D 246 LYS D 249 -1 O LYS D 249 N LYS D 229 SHEET 1 D 6 THR B 16 LYS B 18 0 SHEET 2 D 6 THR B 26 ASP B 37 -1 O SER B 28 N THR B 16 SHEET 3 D 6 SER B 195 TYR B 209 -1 O GLY B 203 N GLN B 32 SHEET 4 D 6 ARG B 158 ASP B 169 1 N GLN B 165 O THR B 202 SHEET 5 D 6 HIS B 147 ALA B 155 -1 N PHE B 149 O TYR B 164 SHEET 6 D 6 ILE B 129 SER B 131 -1 N VAL B 130 O PHE B 150 SHEET 1 E 2 TRP B 101 PRO B 102 0 SHEET 2 E 2 HIS B 108 ILE B 109 -1 O ILE B 109 N TRP B 101 SHEET 1 F 2 LYS B 229 LEU B 232 0 SHEET 2 F 2 ILE B 246 LYS B 249 -1 O LYS B 249 N LYS B 229 SHEET 1 G 6 THR C 16 LYS C 18 0 SHEET 2 G 6 THR C 26 ASP C 37 -1 O SER C 28 N THR C 16 SHEET 3 G 6 SER C 195 TYR C 209 -1 O GLY C 203 N GLN C 32 SHEET 4 G 6 ARG C 158 ASP C 169 1 N LEU C 159 O SER C 195 SHEET 5 G 6 HIS C 147 ALA C 155 -1 N TYR C 153 O SER C 160 SHEET 6 G 6 ILE C 129 SER C 131 -1 N VAL C 130 O PHE C 150 SHEET 1 H 2 TRP C 101 PRO C 102 0 SHEET 2 H 2 HIS C 108 ILE C 109 -1 O ILE C 109 N TRP C 101 SHEET 1 I 2 LYS C 229 LEU C 232 0 SHEET 2 I 2 ILE C 246 LYS C 249 -1 O VAL C 247 N LEU C 231 SHEET 1 J 6 THR D 16 LYS D 18 0 SHEET 2 J 6 THR D 26 ASP D 37 -1 O SER D 28 N THR D 16 SHEET 3 J 6 SER D 195 TYR D 209 -1 O GLY D 203 N GLN D 32 SHEET 4 J 6 ARG D 158 ASP D 169 1 N LEU D 159 O SER D 195 SHEET 5 J 6 HIS D 147 ALA D 155 -1 N PHE D 149 O TYR D 164 SHEET 6 J 6 ILE D 129 SER D 131 -1 N VAL D 130 O PHE D 150 SHEET 1 K 2 TRP D 101 PRO D 102 0 SHEET 2 K 2 HIS D 108 ILE D 109 -1 O ILE D 109 N TRP D 101 CISPEP 1 SER B 19 ASP B 20 0 0.99 SITE 1 AC1 15 CYS A 146 HIS A 147 GLN A 165 ARG A 166 SITE 2 AC1 15 SER A 167 ASP A 169 GLY A 173 ASN A 177 SITE 3 AC1 15 HIS A 207 TYR A 209 HOH A 759 HOH A 770 SITE 4 AC1 15 HOH A 851 ARG B 126 ARG B 127 SITE 1 AC2 14 ARG A 126 ARG A 127 CYS B 146 HIS B 147 SITE 2 AC2 14 GLN B 165 ARG B 166 SER B 167 ALA B 168 SITE 3 AC2 14 ASP B 169 GLY B 173 ASN B 177 HIS B 207 SITE 4 AC2 14 TYR B 209 HOH B 437 SITE 1 AC3 15 ARG C 21 CYS C 146 HIS C 147 GLN C 165 SITE 2 AC3 15 ARG C 166 SER C 167 ASP C 169 GLY C 173 SITE 3 AC3 15 ASN C 177 HIS C 207 TYR C 209 HOH C 408 SITE 4 AC3 15 HOH C 421 ARG D 126 ARG D 127 SITE 1 AC4 14 ARG C 126 ARG C 127 ARG D 21 CYS D 146 SITE 2 AC4 14 HIS D 147 GLN D 165 ARG D 166 SER D 167 SITE 3 AC4 14 ASP D 169 GLY D 173 ASN D 177 HIS D 207 SITE 4 AC4 14 TYR D 209 HOH D 414 CRYST1 182.796 82.601 125.584 90.00 131.90 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005471 0.000000 0.004908 0.00000 SCALE2 0.000000 0.012106 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010698 0.00000