HEADER TRANSFERASE 20-JUN-12 4FOG TITLE CRYSTAL STRUCTURE OF MTB THYA IN COMPLEX WITH 5-FLUORO-DUMP AND 5- TITLE 2 METHYLTETRAHYDROFOLIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE SYNTHASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: TS, TSASE; COMPND 5 EC: 2.1.1.45; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: MT2834, MTV002.29C, RV2764C, THYA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS STRUCTURAL GENOMICS, TB STRUCTURAL GENOMICS CONSORTIUM, TBSGC, KEYWDS 2 TRANSFERASE, THYMIDYLATE SYNTHASE EXPDTA X-RAY DIFFRACTION AUTHOR M.C.M.REDDY,J.B.BRUNING,W.HARSHBARGER,J.C.SACCHETTINI,TB STRUCTURAL AUTHOR 2 GENOMICS CONSORTIUM (TBSGC) REVDAT 2 13-SEP-23 4FOG 1 REMARK REVDAT 1 07-AUG-13 4FOG 0 JRNL AUTH M.C.M.REDDY,J.B.BRUNING,J.C.SACCHETTINI JRNL TITL CRYSTAL STRUCTURE OF BINARY AND TERNARY COMPLEXES OF JRNL TITL 2 THYMIDYLATE SYNTHASE (THYA) FROM MYCOBACTERIUM TUBERCULOSIS: JRNL TITL 3 INSIGHTS INTO THE SELECTIVITY AND MODE OF INHIBITION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.4_486 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 53498 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2712 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.9458 - 6.3976 0.95 2685 151 0.1775 0.2169 REMARK 3 2 6.3976 - 5.0805 0.99 2736 135 0.1850 0.2013 REMARK 3 3 5.0805 - 4.4391 0.99 2715 151 0.1580 0.1881 REMARK 3 4 4.4391 - 4.0335 0.99 2715 149 0.1685 0.2204 REMARK 3 5 4.0335 - 3.7446 0.99 2696 130 0.2078 0.2610 REMARK 3 6 3.7446 - 3.5239 0.98 2713 130 0.2200 0.2833 REMARK 3 7 3.5239 - 3.3475 0.98 2687 156 0.2241 0.2738 REMARK 3 8 3.3475 - 3.2019 0.98 2677 148 0.2296 0.2995 REMARK 3 9 3.2019 - 3.0786 0.98 2663 144 0.2432 0.3145 REMARK 3 10 3.0786 - 2.9724 0.98 2659 157 0.2529 0.3358 REMARK 3 11 2.9724 - 2.8795 0.98 2669 141 0.2537 0.2981 REMARK 3 12 2.8795 - 2.7972 0.98 2652 146 0.2542 0.3255 REMARK 3 13 2.7972 - 2.7236 0.98 2657 152 0.2642 0.2992 REMARK 3 14 2.7236 - 2.6572 0.97 2618 148 0.2625 0.3016 REMARK 3 15 2.6572 - 2.5968 0.97 2686 130 0.2782 0.3513 REMARK 3 16 2.5968 - 2.5415 0.97 2652 120 0.2706 0.3481 REMARK 3 17 2.5415 - 2.4907 0.97 2620 140 0.2664 0.2988 REMARK 3 18 2.4907 - 2.4437 0.97 2665 137 0.2592 0.3336 REMARK 3 19 2.4437 - 2.4000 0.97 2621 147 0.2495 0.3050 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 64.66 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.63900 REMARK 3 B22 (A**2) : -0.61050 REMARK 3 B33 (A**2) : 7.24960 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.65280 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 8778 REMARK 3 ANGLE : 1.148 11998 REMARK 3 CHIRALITY : 0.075 1241 REMARK 3 PLANARITY : 0.006 1522 REMARK 3 DIHEDRAL : 16.642 3210 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4FOG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000073154. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : OSMIC MIRRORS REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK 9.7 W8RSSI REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53664 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 48.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 5.160 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : 0.09700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.16 REMARK 200 R MERGE FOR SHELL (I) : 0.44600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3QJ7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULFATE, 0.1M IMIDAZOLE PH REMARK 280 6.4, 5MM SPERMINE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 92.16400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.15850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 92.16400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.15850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 261 REMARK 465 ALA A 262 REMARK 465 VAL A 263 REMARK 465 ARG B 21 REMARK 465 THR B 22 REMARK 465 VAL B 261 REMARK 465 ALA B 262 REMARK 465 VAL B 263 REMARK 465 VAL C 263 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 THR A 2 CG2 REMARK 470 ARG A 21 CG CD NE CZ NH1 NH2 REMARK 470 THR A 22 OG1 CG2 REMARK 470 THR A 24 OG1 CG2 REMARK 470 SER A 67 OG REMARK 470 ASP A 86 CG OD1 OD2 REMARK 470 THR A 87 CG2 REMARK 470 LEU A 172 CG CD1 CD2 REMARK 470 ASP A 210 CG OD1 OD2 REMARK 470 VAL A 213 CG1 CG2 REMARK 470 GLU A 214 CG CD OE1 OE2 REMARK 470 GLN A 215 CG CD OE1 NE2 REMARK 470 ARG A 217 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 236 CG OD1 OD2 REMARK 470 LYS A 258 CG CD CE NZ REMARK 470 MET B 1 CG SD CE REMARK 470 THR B 2 CG2 REMARK 470 SER B 19 OG REMARK 470 ASP B 86 CG OD1 OD2 REMARK 470 THR B 87 CG2 REMARK 470 GLU B 107 CG CD OE1 OE2 REMARK 470 LYS B 229 CG CD CE NZ REMARK 470 ASP B 236 CG OD1 OD2 REMARK 470 LYS B 249 CD CE NZ REMARK 470 MET C 1 CG SD CE REMARK 470 THR C 2 CG2 REMARK 470 ASP C 86 CG OD1 OD2 REMARK 470 THR C 87 CG2 REMARK 470 GLU C 139 CD OE1 OE2 REMARK 470 ASP C 210 CG OD1 OD2 REMARK 470 LYS C 258 CG CD CE NZ REMARK 470 MET D 1 CG SD CE REMARK 470 THR D 2 CG2 REMARK 470 THR D 22 OG1 CG2 REMARK 470 THR D 87 CG2 REMARK 470 LYS D 229 CG CD CE NZ REMARK 470 ASP D 234 CG OD1 OD2 REMARK 470 LYS D 258 CG CD CE NZ REMARK 470 VAL D 261 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 C2F D 302 O HOH D 477 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 2 59.62 -141.00 REMARK 500 LYS A 18 137.76 178.10 REMARK 500 ASP A 20 -139.60 -119.33 REMARK 500 ARG A 21 98.55 -177.38 REMARK 500 THR A 24 -159.26 -118.73 REMARK 500 LYS A 48 141.06 -173.17 REMARK 500 TYR A 94 -78.15 -15.98 REMARK 500 SER A 100 57.92 -159.30 REMARK 500 TYR A 209 170.16 -50.78 REMARK 500 ALA A 256 -176.64 -58.11 REMARK 500 ALA A 259 146.85 176.71 REMARK 500 HIS B 51 78.82 -65.38 REMARK 500 TYR B 94 -87.58 4.93 REMARK 500 ASP B 122 72.39 -154.64 REMARK 500 PRO B 228 -176.89 -68.18 REMARK 500 ASP B 252 63.89 -114.82 REMARK 500 THR C 2 67.29 -119.70 REMARK 500 ASP C 20 -152.81 -115.64 REMARK 500 THR C 22 72.96 -153.46 REMARK 500 PRO C 43 49.91 -72.12 REMARK 500 GLU C 74 -19.54 -49.02 REMARK 500 ILE C 93 -161.23 -71.15 REMARK 500 SER C 100 50.52 -158.34 REMARK 500 SER C 105 7.42 -68.02 REMARK 500 ASP C 122 68.79 -151.30 REMARK 500 ASP C 169 91.61 -67.72 REMARK 500 ASP C 252 59.85 -118.76 REMARK 500 THR D 24 -157.10 -87.26 REMARK 500 GLU D 82 36.73 -90.55 REMARK 500 TRP D 83 -14.82 -142.85 REMARK 500 SER D 85 -178.99 -61.62 REMARK 500 TYR D 94 -84.41 7.90 REMARK 500 SER D 100 55.20 -152.70 REMARK 500 ASP D 122 66.77 -158.56 REMARK 500 ASN D 250 33.32 70.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UFP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C2F A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UFP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UFP C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C2F C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UFP D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C2F D 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QJ7 RELATED DB: PDB REMARK 900 THYA BOUND TO DUMP REMARK 900 RELATED ID: 4FOA RELATED DB: PDB REMARK 900 THYA BOUND TO 5-FLUORO-DUMP REMARK 900 RELATED ID: 4FOX RELATED DB: PDB REMARK 900 THYA IN COMPLEX WITH UMP AND RALTITREXED DBREF 4FOG A 1 263 UNP P67044 TYSY_MYCTU 1 263 DBREF 4FOG B 1 263 UNP P67044 TYSY_MYCTU 1 263 DBREF 4FOG C 1 263 UNP P67044 TYSY_MYCTU 1 263 DBREF 4FOG D 1 263 UNP P67044 TYSY_MYCTU 1 263 SEQRES 1 A 263 MET THR PRO TYR GLU ASP LEU LEU ARG PHE VAL LEU GLU SEQRES 2 A 263 THR GLY THR PRO LYS SER ASP ARG THR GLY THR GLY THR SEQRES 3 A 263 ARG SER LEU PHE GLY GLN GLN MET ARG TYR ASP LEU SER SEQRES 4 A 263 ALA GLY PHE PRO LEU LEU THR THR LYS LYS VAL HIS PHE SEQRES 5 A 263 LYS SER VAL ALA TYR GLU LEU LEU TRP PHE LEU ARG GLY SEQRES 6 A 263 ASP SER ASN ILE GLY TRP LEU HIS GLU HIS GLY VAL THR SEQRES 7 A 263 ILE TRP ASP GLU TRP ALA SER ASP THR GLY GLU LEU GLY SEQRES 8 A 263 PRO ILE TYR GLY VAL GLN TRP ARG SER TRP PRO ALA PRO SEQRES 9 A 263 SER GLY GLU HIS ILE ASP GLN ILE SER ALA ALA LEU ASP SEQRES 10 A 263 LEU LEU ARG THR ASP PRO ASP SER ARG ARG ILE ILE VAL SEQRES 11 A 263 SER ALA TRP ASN VAL GLY GLU ILE GLU ARG MET ALA LEU SEQRES 12 A 263 PRO PRO CYS HIS ALA PHE PHE GLN PHE TYR VAL ALA ASP SEQRES 13 A 263 GLY ARG LEU SER CYS GLN LEU TYR GLN ARG SER ALA ASP SEQRES 14 A 263 LEU PHE LEU GLY VAL PRO PHE ASN ILE ALA SER TYR ALA SEQRES 15 A 263 LEU LEU THR HIS MET MET ALA ALA GLN ALA GLY LEU SER SEQRES 16 A 263 VAL GLY GLU PHE ILE TRP THR GLY GLY ASP CYS HIS ILE SEQRES 17 A 263 TYR ASP ASN HIS VAL GLU GLN VAL ARG LEU GLN LEU SER SEQRES 18 A 263 ARG GLU PRO ARG PRO TYR PRO LYS LEU LEU LEU ALA ASP SEQRES 19 A 263 ARG ASP SER ILE PHE GLU TYR THR TYR GLU ASP ILE VAL SEQRES 20 A 263 VAL LYS ASN TYR ASP PRO HIS PRO ALA ILE LYS ALA PRO SEQRES 21 A 263 VAL ALA VAL SEQRES 1 B 263 MET THR PRO TYR GLU ASP LEU LEU ARG PHE VAL LEU GLU SEQRES 2 B 263 THR GLY THR PRO LYS SER ASP ARG THR GLY THR GLY THR SEQRES 3 B 263 ARG SER LEU PHE GLY GLN GLN MET ARG TYR ASP LEU SER SEQRES 4 B 263 ALA GLY PHE PRO LEU LEU THR THR LYS LYS VAL HIS PHE SEQRES 5 B 263 LYS SER VAL ALA TYR GLU LEU LEU TRP PHE LEU ARG GLY SEQRES 6 B 263 ASP SER ASN ILE GLY TRP LEU HIS GLU HIS GLY VAL THR SEQRES 7 B 263 ILE TRP ASP GLU TRP ALA SER ASP THR GLY GLU LEU GLY SEQRES 8 B 263 PRO ILE TYR GLY VAL GLN TRP ARG SER TRP PRO ALA PRO SEQRES 9 B 263 SER GLY GLU HIS ILE ASP GLN ILE SER ALA ALA LEU ASP SEQRES 10 B 263 LEU LEU ARG THR ASP PRO ASP SER ARG ARG ILE ILE VAL SEQRES 11 B 263 SER ALA TRP ASN VAL GLY GLU ILE GLU ARG MET ALA LEU SEQRES 12 B 263 PRO PRO CYS HIS ALA PHE PHE GLN PHE TYR VAL ALA ASP SEQRES 13 B 263 GLY ARG LEU SER CYS GLN LEU TYR GLN ARG SER ALA ASP SEQRES 14 B 263 LEU PHE LEU GLY VAL PRO PHE ASN ILE ALA SER TYR ALA SEQRES 15 B 263 LEU LEU THR HIS MET MET ALA ALA GLN ALA GLY LEU SER SEQRES 16 B 263 VAL GLY GLU PHE ILE TRP THR GLY GLY ASP CYS HIS ILE SEQRES 17 B 263 TYR ASP ASN HIS VAL GLU GLN VAL ARG LEU GLN LEU SER SEQRES 18 B 263 ARG GLU PRO ARG PRO TYR PRO LYS LEU LEU LEU ALA ASP SEQRES 19 B 263 ARG ASP SER ILE PHE GLU TYR THR TYR GLU ASP ILE VAL SEQRES 20 B 263 VAL LYS ASN TYR ASP PRO HIS PRO ALA ILE LYS ALA PRO SEQRES 21 B 263 VAL ALA VAL SEQRES 1 C 263 MET THR PRO TYR GLU ASP LEU LEU ARG PHE VAL LEU GLU SEQRES 2 C 263 THR GLY THR PRO LYS SER ASP ARG THR GLY THR GLY THR SEQRES 3 C 263 ARG SER LEU PHE GLY GLN GLN MET ARG TYR ASP LEU SER SEQRES 4 C 263 ALA GLY PHE PRO LEU LEU THR THR LYS LYS VAL HIS PHE SEQRES 5 C 263 LYS SER VAL ALA TYR GLU LEU LEU TRP PHE LEU ARG GLY SEQRES 6 C 263 ASP SER ASN ILE GLY TRP LEU HIS GLU HIS GLY VAL THR SEQRES 7 C 263 ILE TRP ASP GLU TRP ALA SER ASP THR GLY GLU LEU GLY SEQRES 8 C 263 PRO ILE TYR GLY VAL GLN TRP ARG SER TRP PRO ALA PRO SEQRES 9 C 263 SER GLY GLU HIS ILE ASP GLN ILE SER ALA ALA LEU ASP SEQRES 10 C 263 LEU LEU ARG THR ASP PRO ASP SER ARG ARG ILE ILE VAL SEQRES 11 C 263 SER ALA TRP ASN VAL GLY GLU ILE GLU ARG MET ALA LEU SEQRES 12 C 263 PRO PRO CYS HIS ALA PHE PHE GLN PHE TYR VAL ALA ASP SEQRES 13 C 263 GLY ARG LEU SER CYS GLN LEU TYR GLN ARG SER ALA ASP SEQRES 14 C 263 LEU PHE LEU GLY VAL PRO PHE ASN ILE ALA SER TYR ALA SEQRES 15 C 263 LEU LEU THR HIS MET MET ALA ALA GLN ALA GLY LEU SER SEQRES 16 C 263 VAL GLY GLU PHE ILE TRP THR GLY GLY ASP CYS HIS ILE SEQRES 17 C 263 TYR ASP ASN HIS VAL GLU GLN VAL ARG LEU GLN LEU SER SEQRES 18 C 263 ARG GLU PRO ARG PRO TYR PRO LYS LEU LEU LEU ALA ASP SEQRES 19 C 263 ARG ASP SER ILE PHE GLU TYR THR TYR GLU ASP ILE VAL SEQRES 20 C 263 VAL LYS ASN TYR ASP PRO HIS PRO ALA ILE LYS ALA PRO SEQRES 21 C 263 VAL ALA VAL SEQRES 1 D 263 MET THR PRO TYR GLU ASP LEU LEU ARG PHE VAL LEU GLU SEQRES 2 D 263 THR GLY THR PRO LYS SER ASP ARG THR GLY THR GLY THR SEQRES 3 D 263 ARG SER LEU PHE GLY GLN GLN MET ARG TYR ASP LEU SER SEQRES 4 D 263 ALA GLY PHE PRO LEU LEU THR THR LYS LYS VAL HIS PHE SEQRES 5 D 263 LYS SER VAL ALA TYR GLU LEU LEU TRP PHE LEU ARG GLY SEQRES 6 D 263 ASP SER ASN ILE GLY TRP LEU HIS GLU HIS GLY VAL THR SEQRES 7 D 263 ILE TRP ASP GLU TRP ALA SER ASP THR GLY GLU LEU GLY SEQRES 8 D 263 PRO ILE TYR GLY VAL GLN TRP ARG SER TRP PRO ALA PRO SEQRES 9 D 263 SER GLY GLU HIS ILE ASP GLN ILE SER ALA ALA LEU ASP SEQRES 10 D 263 LEU LEU ARG THR ASP PRO ASP SER ARG ARG ILE ILE VAL SEQRES 11 D 263 SER ALA TRP ASN VAL GLY GLU ILE GLU ARG MET ALA LEU SEQRES 12 D 263 PRO PRO CYS HIS ALA PHE PHE GLN PHE TYR VAL ALA ASP SEQRES 13 D 263 GLY ARG LEU SER CYS GLN LEU TYR GLN ARG SER ALA ASP SEQRES 14 D 263 LEU PHE LEU GLY VAL PRO PHE ASN ILE ALA SER TYR ALA SEQRES 15 D 263 LEU LEU THR HIS MET MET ALA ALA GLN ALA GLY LEU SER SEQRES 16 D 263 VAL GLY GLU PHE ILE TRP THR GLY GLY ASP CYS HIS ILE SEQRES 17 D 263 TYR ASP ASN HIS VAL GLU GLN VAL ARG LEU GLN LEU SER SEQRES 18 D 263 ARG GLU PRO ARG PRO TYR PRO LYS LEU LEU LEU ALA ASP SEQRES 19 D 263 ARG ASP SER ILE PHE GLU TYR THR TYR GLU ASP ILE VAL SEQRES 20 D 263 VAL LYS ASN TYR ASP PRO HIS PRO ALA ILE LYS ALA PRO SEQRES 21 D 263 VAL ALA VAL HET UFP A 301 21 HET C2F A 302 33 HET UFP B 301 21 HET UFP C 301 21 HET C2F C 302 33 HET UFP D 301 21 HET C2F D 302 33 HETNAM UFP 5-FLUORO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE HETNAM C2F 5-METHYL-5,6,7,8-TETRAHYDROFOLIC ACID FORMUL 5 UFP 4(C9 H12 F N2 O8 P) FORMUL 6 C2F 3(C20 H25 N7 O6) FORMUL 12 HOH *298(H2 O) HELIX 1 1 THR A 2 GLY A 15 1 14 HELIX 2 2 SER A 39 GLY A 41 5 3 HELIX 3 3 HIS A 51 ARG A 64 1 14 HELIX 4 4 ILE A 69 HIS A 75 1 7 HELIX 5 5 TRP A 80 ALA A 84 5 5 HELIX 6 6 ILE A 93 SER A 100 1 8 HELIX 7 7 ASP A 110 ASP A 122 1 13 HELIX 8 8 GLU A 137 MET A 141 5 5 HELIX 9 9 GLY A 173 GLY A 193 1 21 HELIX 10 10 ASN A 211 ARG A 222 1 12 HELIX 11 11 SER A 237 TYR A 241 5 5 HELIX 12 12 THR A 242 GLU A 244 5 3 HELIX 13 13 THR B 2 GLY B 15 1 14 HELIX 14 14 SER B 39 GLY B 41 5 3 HELIX 15 15 HIS B 51 ARG B 64 1 14 HELIX 16 16 ILE B 69 HIS B 75 1 7 HELIX 17 17 TRP B 80 ALA B 84 5 5 HELIX 18 18 ILE B 93 SER B 100 1 8 HELIX 19 19 ASP B 110 ASP B 122 1 13 HELIX 20 20 GLU B 137 MET B 141 5 5 HELIX 21 21 LEU B 172 ALA B 192 1 21 HELIX 22 22 HIS B 212 SER B 221 1 10 HELIX 23 23 SER B 237 TYR B 241 5 5 HELIX 24 24 THR B 242 GLU B 244 5 3 HELIX 25 25 THR C 2 GLY C 15 1 14 HELIX 26 26 SER C 39 GLY C 41 5 3 HELIX 27 27 HIS C 51 GLY C 65 1 15 HELIX 28 28 ILE C 69 GLU C 74 1 6 HELIX 29 29 TRP C 80 ALA C 84 5 5 HELIX 30 30 ILE C 93 SER C 100 1 8 HELIX 31 31 ASP C 110 ASP C 122 1 13 HELIX 32 32 ASN C 134 MET C 141 5 8 HELIX 33 33 LEU C 172 GLY C 193 1 22 HELIX 34 34 TYR C 209 ASN C 211 5 3 HELIX 35 35 HIS C 212 SER C 221 1 10 HELIX 36 36 SER C 237 TYR C 241 5 5 HELIX 37 37 THR C 242 GLU C 244 5 3 HELIX 38 38 THR D 2 GLY D 15 1 14 HELIX 39 39 SER D 39 GLY D 41 5 3 HELIX 40 40 HIS D 51 ARG D 64 1 14 HELIX 41 41 ILE D 69 GLU D 74 1 6 HELIX 42 42 TRP D 80 ALA D 84 5 5 HELIX 43 43 ILE D 93 SER D 100 1 8 HELIX 44 44 ASP D 110 ASP D 122 1 13 HELIX 45 45 ASN D 134 MET D 141 5 8 HELIX 46 46 GLY D 173 ALA D 192 1 20 HELIX 47 47 HIS D 212 SER D 221 1 10 HELIX 48 48 SER D 237 TYR D 241 5 5 HELIX 49 49 THR D 242 GLU D 244 5 3 SHEET 1 A 4 THR A 16 LYS A 18 0 SHEET 2 A 4 THR A 26 PHE A 30 -1 O SER A 28 N THR A 16 SHEET 3 A 4 SER A 195 ILE A 208 -1 O CYS A 206 N LEU A 29 SHEET 4 A 4 GLN A 33 ASP A 37 -1 N TYR A 36 O PHE A 199 SHEET 1 B 6 THR A 16 LYS A 18 0 SHEET 2 B 6 THR A 26 PHE A 30 -1 O SER A 28 N THR A 16 SHEET 3 B 6 SER A 195 ILE A 208 -1 O CYS A 206 N LEU A 29 SHEET 4 B 6 ARG A 158 ASP A 169 1 N LEU A 159 O SER A 195 SHEET 5 B 6 HIS A 147 VAL A 154 -1 N TYR A 153 O SER A 160 SHEET 6 B 6 ILE A 129 SER A 131 -1 N VAL A 130 O PHE A 150 SHEET 1 C 2 TRP A 101 PRO A 102 0 SHEET 2 C 2 HIS A 108 ILE A 109 -1 O ILE A 109 N TRP A 101 SHEET 1 D 4 ILE A 246 LYS A 249 0 SHEET 2 D 4 LYS A 229 ALA A 233 -1 N LEU A 231 O VAL A 247 SHEET 3 D 4 LYS C 229 ALA C 233 -1 O LEU C 232 N LEU A 232 SHEET 4 D 4 ILE C 246 LYS C 249 -1 O LYS C 249 N LYS C 229 SHEET 1 E 6 THR B 16 SER B 19 0 SHEET 2 E 6 GLY B 25 ASP B 37 -1 O SER B 28 N THR B 16 SHEET 3 E 6 SER B 195 TYR B 209 -1 O GLY B 203 N GLN B 32 SHEET 4 E 6 ARG B 158 ASP B 169 1 N LEU B 159 O SER B 195 SHEET 5 E 6 HIS B 147 ALA B 155 -1 N TYR B 153 O SER B 160 SHEET 6 E 6 ILE B 129 SER B 131 -1 N VAL B 130 O PHE B 150 SHEET 1 F 2 TRP B 101 PRO B 102 0 SHEET 2 F 2 HIS B 108 ILE B 109 -1 O ILE B 109 N TRP B 101 SHEET 1 G 2 LYS B 229 LEU B 232 0 SHEET 2 G 2 ILE B 246 LYS B 249 -1 O LYS B 249 N LYS B 229 SHEET 1 H 4 THR C 16 PRO C 17 0 SHEET 2 H 4 ARG C 27 PHE C 30 -1 O SER C 28 N THR C 16 SHEET 3 H 4 SER C 195 ILE C 208 -1 O CYS C 206 N LEU C 29 SHEET 4 H 4 GLN C 33 ASP C 37 -1 N TYR C 36 O PHE C 199 SHEET 1 I 6 THR C 16 PRO C 17 0 SHEET 2 I 6 ARG C 27 PHE C 30 -1 O SER C 28 N THR C 16 SHEET 3 I 6 SER C 195 ILE C 208 -1 O CYS C 206 N LEU C 29 SHEET 4 I 6 ARG C 158 ASP C 169 1 N CYS C 161 O ILE C 200 SHEET 5 I 6 HIS C 147 ALA C 155 -1 N TYR C 153 O SER C 160 SHEET 6 I 6 ILE C 129 SER C 131 -1 N VAL C 130 O PHE C 150 SHEET 1 J 2 TRP C 101 PRO C 102 0 SHEET 2 J 2 HIS C 108 ILE C 109 -1 O ILE C 109 N TRP C 101 SHEET 1 K 6 THR D 16 LYS D 18 0 SHEET 2 K 6 THR D 26 ASP D 37 -1 O THR D 26 N LYS D 18 SHEET 3 K 6 SER D 195 TYR D 209 -1 O TRP D 201 N MET D 34 SHEET 4 K 6 ARG D 158 ASP D 169 1 N GLN D 165 O THR D 202 SHEET 5 K 6 HIS D 147 ALA D 155 -1 N TYR D 153 O SER D 160 SHEET 6 K 6 ILE D 129 SER D 131 -1 N VAL D 130 O PHE D 150 SHEET 1 L 2 TRP D 101 PRO D 102 0 SHEET 2 L 2 HIS D 108 ILE D 109 -1 O ILE D 109 N TRP D 101 SHEET 1 M 2 LYS D 229 LEU D 232 0 SHEET 2 M 2 ILE D 246 LYS D 249 -1 O VAL D 247 N LEU D 231 CISPEP 1 ARG A 21 THR A 22 0 -2.19 SITE 1 AC1 14 TYR A 94 CYS A 146 HIS A 147 GLN A 165 SITE 2 AC1 14 ARG A 166 SER A 167 ASP A 169 ASN A 177 SITE 3 AC1 14 HIS A 207 TYR A 209 C2F A 302 HOH A 420 SITE 4 AC1 14 ARG D 126 ARG D 127 SITE 1 AC2 10 HIS A 51 SER A 54 ILE A 79 TRP A 83 SITE 2 AC2 10 LEU A 143 ASP A 169 GLY A 173 PHE A 176 SITE 3 AC2 10 TYR A 209 UFP A 301 SITE 1 AC3 15 TYR B 94 CYS B 146 HIS B 147 GLN B 165 SITE 2 AC3 15 ARG B 166 SER B 167 ALA B 168 ASP B 169 SITE 3 AC3 15 GLY B 173 ASN B 177 HIS B 207 TYR B 209 SITE 4 AC3 15 HOH B 439 HOH B 440 ARG C 126 SITE 1 AC4 15 ARG B 126 ARG B 127 ARG C 21 TYR C 94 SITE 2 AC4 15 CYS C 146 HIS C 147 GLN C 165 ARG C 166 SITE 3 AC4 15 SER C 167 ASP C 169 ASN C 177 HIS C 207 SITE 4 AC4 15 TYR C 209 C2F C 302 HOH C 416 SITE 1 AC5 14 HIS C 51 SER C 54 ILE C 79 TRP C 83 SITE 2 AC5 14 LEU C 143 ASP C 169 GLY C 173 PHE C 176 SITE 3 AC5 14 VAL C 261 ALA C 262 UFP C 301 HOH C 452 SITE 4 AC5 14 HOH C 456 HOH C 459 SITE 1 AC6 17 ARG A 126 ARG A 127 HOH A 440 ARG D 21 SITE 2 AC6 17 TYR D 94 CYS D 146 HIS D 147 GLN D 165 SITE 3 AC6 17 ARG D 166 SER D 167 ALA D 168 ASP D 169 SITE 4 AC6 17 ASN D 177 HIS D 207 TYR D 209 C2F D 302 SITE 5 AC6 17 HOH D 484 SITE 1 AC7 14 ILE D 79 TRP D 80 TRP D 83 LEU D 143 SITE 2 AC7 14 ASP D 169 LEU D 172 GLY D 173 ILE D 257 SITE 3 AC7 14 ALA D 262 UFP D 301 HOH D 425 HOH D 467 SITE 4 AC7 14 HOH D 477 HOH D 484 CRYST1 184.328 82.317 125.980 90.00 132.30 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005425 0.000000 0.004936 0.00000 SCALE2 0.000000 0.012148 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010732 0.00000