data_4FOM # _entry.id 4FOM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4FOM pdb_00004fom 10.2210/pdb4fom/pdb RCSB RCSB073160 ? ? WWPDB D_1000073160 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4FMF 'Crystal structure of human nectin-1 full ectodomain D1-D3' unspecified PDB 4FMK 'Crystal structure of murine nectin-2 fragment D1-D2' unspecified PDB 4FN0 'Crystal structure of murine nectin-2 fragment D1-D2, 2nd crystal form' unspecified PDB 4FQP 'Crystal structure of human nectin-like 5 full ectodomain D1-D3' unspecified PDB 4FRW 'Crystal structure of human nectin-4 fragment D1-D2' unspecified PDB 4FS0 'Crystal structure of mutant F136D of mouse nectin-2 fragment D1-D2' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4FOM _pdbx_database_status.recvd_initial_deposition_date 2012-06-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Harrison, O.J.' 1 'Jin, X.' 2 'Brasch, J.' 3 'Shapiro, L.' 4 # _citation.id primary _citation.title 'Nectin ectodomain structures reveal a canonical adhesive interface.' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 19 _citation.page_first 906 _citation.page_last 915 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22902367 _citation.pdbx_database_id_DOI 10.1038/nsmb.2366 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Harrison, O.J.' 1 ? primary 'Vendome, J.' 2 ? primary 'Brasch, J.' 3 ? primary 'Jin, X.' 4 ? primary 'Hong, S.' 5 ? primary 'Katsamba, P.S.' 6 ? primary 'Ahlsen, G.' 7 ? primary 'Troyanovsky, R.B.' 8 ? primary 'Troyanovsky, S.M.' 9 ? primary 'Honig, B.' 10 ? primary 'Shapiro, L.' 11 ? # _cell.entry_id 4FOM _cell.length_a 131.867 _cell.length_b 131.867 _cell.length_c 247.543 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4FOM _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Poliovirus receptor-related protein 3' 34039.387 1 ? ? 'ectodomain (D1-D3, UNP residues 58-359)' ? 2 branched man ;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; 910.823 2 ? ? ? ? 3 branched man 'beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 586.542 1 ? ? ? ? 4 branched man ;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose ; 1056.964 1 ? ? ? ? 5 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Nectin-3, CDw113' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPIIVEPHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHN IGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTT TSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANP PPFKSVWSRLDGQWPDGLLASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDPPHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;GPIIVEPHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHN IGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTT TSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANP PPFKSVWSRLDGQWPDGLLASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDPPHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 ILE n 1 4 ILE n 1 5 VAL n 1 6 GLU n 1 7 PRO n 1 8 HIS n 1 9 VAL n 1 10 THR n 1 11 ALA n 1 12 VAL n 1 13 TRP n 1 14 GLY n 1 15 LYS n 1 16 ASN n 1 17 VAL n 1 18 SER n 1 19 LEU n 1 20 LYS n 1 21 CYS n 1 22 LEU n 1 23 ILE n 1 24 GLU n 1 25 VAL n 1 26 ASN n 1 27 GLU n 1 28 THR n 1 29 ILE n 1 30 THR n 1 31 GLN n 1 32 ILE n 1 33 SER n 1 34 TRP n 1 35 GLU n 1 36 LYS n 1 37 ILE n 1 38 HIS n 1 39 GLY n 1 40 LYS n 1 41 SER n 1 42 SER n 1 43 GLN n 1 44 THR n 1 45 VAL n 1 46 ALA n 1 47 VAL n 1 48 HIS n 1 49 HIS n 1 50 PRO n 1 51 GLN n 1 52 TYR n 1 53 GLY n 1 54 PHE n 1 55 SER n 1 56 VAL n 1 57 GLN n 1 58 GLY n 1 59 GLU n 1 60 TYR n 1 61 GLN n 1 62 GLY n 1 63 ARG n 1 64 VAL n 1 65 LEU n 1 66 PHE n 1 67 LYS n 1 68 ASN n 1 69 TYR n 1 70 SER n 1 71 LEU n 1 72 ASN n 1 73 ASP n 1 74 ALA n 1 75 THR n 1 76 ILE n 1 77 THR n 1 78 LEU n 1 79 HIS n 1 80 ASN n 1 81 ILE n 1 82 GLY n 1 83 PHE n 1 84 SER n 1 85 ASP n 1 86 SER n 1 87 GLY n 1 88 LYS n 1 89 TYR n 1 90 ILE n 1 91 CYS n 1 92 LYS n 1 93 ALA n 1 94 VAL n 1 95 THR n 1 96 PHE n 1 97 PRO n 1 98 LEU n 1 99 GLY n 1 100 ASN n 1 101 ALA n 1 102 GLN n 1 103 SER n 1 104 SER n 1 105 THR n 1 106 THR n 1 107 VAL n 1 108 THR n 1 109 VAL n 1 110 LEU n 1 111 VAL n 1 112 GLU n 1 113 PRO n 1 114 THR n 1 115 VAL n 1 116 SER n 1 117 LEU n 1 118 ILE n 1 119 LYS n 1 120 GLY n 1 121 PRO n 1 122 ASP n 1 123 SER n 1 124 LEU n 1 125 ILE n 1 126 ASP n 1 127 GLY n 1 128 GLY n 1 129 ASN n 1 130 GLU n 1 131 THR n 1 132 VAL n 1 133 ALA n 1 134 ALA n 1 135 ILE n 1 136 CYS n 1 137 ILE n 1 138 ALA n 1 139 ALA n 1 140 THR n 1 141 GLY n 1 142 LYS n 1 143 PRO n 1 144 VAL n 1 145 ALA n 1 146 HIS n 1 147 ILE n 1 148 ASP n 1 149 TRP n 1 150 GLU n 1 151 GLY n 1 152 ASP n 1 153 LEU n 1 154 GLY n 1 155 GLU n 1 156 MET n 1 157 GLU n 1 158 SER n 1 159 THR n 1 160 THR n 1 161 THR n 1 162 SER n 1 163 PHE n 1 164 PRO n 1 165 ASN n 1 166 GLU n 1 167 THR n 1 168 ALA n 1 169 THR n 1 170 ILE n 1 171 ILE n 1 172 SER n 1 173 GLN n 1 174 TYR n 1 175 LYS n 1 176 LEU n 1 177 PHE n 1 178 PRO n 1 179 THR n 1 180 ARG n 1 181 PHE n 1 182 ALA n 1 183 ARG n 1 184 GLY n 1 185 ARG n 1 186 ARG n 1 187 ILE n 1 188 THR n 1 189 CYS n 1 190 VAL n 1 191 VAL n 1 192 LYS n 1 193 HIS n 1 194 PRO n 1 195 ALA n 1 196 LEU n 1 197 GLU n 1 198 LYS n 1 199 ASP n 1 200 ILE n 1 201 ARG n 1 202 TYR n 1 203 SER n 1 204 PHE n 1 205 ILE n 1 206 LEU n 1 207 ASP n 1 208 ILE n 1 209 GLN n 1 210 TYR n 1 211 ALA n 1 212 PRO n 1 213 GLU n 1 214 VAL n 1 215 SER n 1 216 VAL n 1 217 THR n 1 218 GLY n 1 219 TYR n 1 220 ASP n 1 221 GLY n 1 222 ASN n 1 223 TRP n 1 224 PHE n 1 225 VAL n 1 226 GLY n 1 227 ARG n 1 228 LYS n 1 229 GLY n 1 230 VAL n 1 231 ASN n 1 232 LEU n 1 233 LYS n 1 234 CYS n 1 235 ASN n 1 236 ALA n 1 237 ASP n 1 238 ALA n 1 239 ASN n 1 240 PRO n 1 241 PRO n 1 242 PRO n 1 243 PHE n 1 244 LYS n 1 245 SER n 1 246 VAL n 1 247 TRP n 1 248 SER n 1 249 ARG n 1 250 LEU n 1 251 ASP n 1 252 GLY n 1 253 GLN n 1 254 TRP n 1 255 PRO n 1 256 ASP n 1 257 GLY n 1 258 LEU n 1 259 LEU n 1 260 ALA n 1 261 SER n 1 262 ASP n 1 263 ASN n 1 264 THR n 1 265 LEU n 1 266 HIS n 1 267 PHE n 1 268 VAL n 1 269 HIS n 1 270 PRO n 1 271 LEU n 1 272 THR n 1 273 PHE n 1 274 ASN n 1 275 TYR n 1 276 SER n 1 277 GLY n 1 278 VAL n 1 279 TYR n 1 280 ILE n 1 281 CYS n 1 282 LYS n 1 283 VAL n 1 284 THR n 1 285 ASN n 1 286 SER n 1 287 LEU n 1 288 GLY n 1 289 GLN n 1 290 ARG n 1 291 SER n 1 292 ASP n 1 293 GLN n 1 294 LYS n 1 295 VAL n 1 296 ILE n 1 297 TYR n 1 298 ILE n 1 299 SER n 1 300 ASP n 1 301 PRO n 1 302 PRO n 1 303 HIS n 1 304 HIS n 1 305 HIS n 1 306 HIS n 1 307 HIS n 1 308 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PVRL3, PRR3' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name human _entity_src_gen.pdbx_host_org_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9606 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line 'HEK 293F' _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pCEP4 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PVRL3_HUMAN _struct_ref.pdbx_db_accession Q9NQS3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GPIIVEPHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHN IGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTT TSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANP PPFKSVWSRLDGQWPDGLLASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDPP ; _struct_ref.pdbx_align_begin 58 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4FOM _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 302 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9NQS3 _struct_ref_seq.db_align_beg 58 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 359 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 58 _struct_ref_seq.pdbx_auth_seq_align_end 359 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4FOM HIS A 303 ? UNP Q9NQS3 ? ? 'expression tag' 360 1 1 4FOM HIS A 304 ? UNP Q9NQS3 ? ? 'expression tag' 361 2 1 4FOM HIS A 305 ? UNP Q9NQS3 ? ? 'expression tag' 362 3 1 4FOM HIS A 306 ? UNP Q9NQS3 ? ? 'expression tag' 363 4 1 4FOM HIS A 307 ? UNP Q9NQS3 ? ? 'expression tag' 364 5 1 4FOM HIS A 308 ? UNP Q9NQS3 ? ? 'expression tag' 365 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose 'beta-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FUC 'L-saccharide, alpha linking' . alpha-L-fucopyranose 'alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose' 'C6 H12 O5' 164.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose 'alpha-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4FOM _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 9.13 _exptl_crystal.density_percent_sol 86.52 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_details '4.6 M ammonium acetate, 0.1 M sodium acetate, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2011-07-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Bent single Si(111) crystal (horizontal focusing and deflection)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X4C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X4C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9792 # _reflns.entry_id 4FOM _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 40.0 _reflns.d_resolution_high 3.93 _reflns.number_obs 11776 _reflns.number_all 11776 _reflns.percent_possible_obs 98.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.07 _reflns.pdbx_netI_over_sigmaI 34.0 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 3.93 4.07 99.1 ? 0.61 3.2 6.1 ? ? ? ? ? ? 1 1 4.07 4.23 99.3 ? ? ? ? ? ? ? ? ? ? 2 1 4.23 4.43 99.0 ? ? ? ? ? ? ? ? ? ? 3 1 4.43 4.66 99.1 ? ? ? ? ? ? ? ? ? ? 4 1 4.66 4.95 98.0 ? ? ? ? ? ? ? ? ? ? 5 1 4.95 5.33 99.0 ? ? ? ? ? ? ? ? ? ? 6 1 # _refine.entry_id 4FOM _refine.ls_number_reflns_obs 11210 _refine.ls_number_reflns_all 11776 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 3.93 _refine.ls_percent_reflns_obs 98.44 _refine.ls_R_factor_obs 0.24824 _refine.ls_R_factor_all 0.24824 _refine.ls_R_factor_R_work 0.24680 _refine.ls_R_factor_R_free 0.27904 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.7 _refine.ls_number_reflns_R_free 558 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.932 _refine.correlation_coeff_Fo_to_Fc_free 0.907 _refine.B_iso_mean 170.513 _refine.aniso_B[1][1] 4.45 _refine.aniso_B[2][2] 4.45 _refine.aniso_B[3][3] -6.68 _refine.aniso_B[1][2] 2.23 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 3ALP' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 1.721 _refine.pdbx_overall_ESU_R_Free 0.538 _refine.overall_SU_ML 0.467 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 62.326 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2342 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 246 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2588 _refine_hist.d_res_high 3.93 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.016 0.020 ? 2656 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.004 0.020 ? 1735 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.295 2.041 ? 3628 ? 'X-RAY DIFFRACTION' r_angle_other_deg 0.934 3.000 ? 4206 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 8.555 5.000 ? 301 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 41.454 24.455 ? 101 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 22.382 15.000 ? 381 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 22.335 15.000 ? 9 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.058 0.200 ? 452 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.011 0.021 ? 2742 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.005 0.020 ? 488 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 3.93 _refine_ls_shell.d_res_low 4.029 _refine_ls_shell.number_reflns_R_work 659 _refine_ls_shell.R_factor_R_work 0.325 _refine_ls_shell.percent_reflns_obs 97.74 _refine_ls_shell.R_factor_R_free 0.374 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 34 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4FOM _struct.title 'Crystal structure of human nectin-3 full ectodomain (D1-D3)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4FOM _struct_keywords.pdbx_keywords 'CELL ADHESION' _struct_keywords.text 'Immunoglobulin-like domain, Ig domain, CELL ADHESION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 2 ? F N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 82 ? SER A 86 ? GLY A 139 SER A 143 5 ? 5 HELX_P HELX_P2 2 THR A 179 ? ARG A 183 ? THR A 236 ARG A 240 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 21 SG ? ? ? 1_555 A CYS 91 SG ? ? A CYS 78 A CYS 148 1_555 ? ? ? ? ? ? ? 2.790 ? ? disulf2 disulf ? ? A CYS 136 SG ? ? ? 1_555 A CYS 189 SG ? ? A CYS 193 A CYS 246 1_555 ? ? ? ? ? ? ? 2.046 ? ? disulf3 disulf ? ? A CYS 234 SG ? ? ? 1_555 A CYS 281 SG ? ? A CYS 291 A CYS 338 1_555 ? ? ? ? ? ? ? 2.045 ? ? covale1 covale one ? A ASN 16 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 73 B NAG 1 1_555 ? ? ? ? ? ? ? 1.424 ? N-Glycosylation covale2 covale one ? A ASN 68 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 125 C NAG 1 1_555 ? ? ? ? ? ? ? 1.429 ? N-Glycosylation covale3 covale one ? A ASN 129 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 186 D NAG 1 1_555 ? ? ? ? ? ? ? 1.709 ? N-Glycosylation covale4 covale one ? A ASN 165 ND2 ? ? ? 1_555 E NAG . C1 ? ? A ASN 222 E NAG 1 1_555 ? ? ? ? ? ? ? 1.451 ? N-Glycosylation covale5 covale one ? A ASN 274 ND2 ? ? ? 1_555 F NAG . C1 ? ? A ASN 331 A NAG 420 1_555 ? ? ? ? ? ? ? 1.449 ? N-Glycosylation covale6 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.439 ? ? covale7 covale both ? B NAG . O4 ? ? ? 1_555 B BMA . C1 ? ? B NAG 2 B BMA 3 1_555 ? ? ? ? ? ? ? 1.438 ? ? covale8 covale both ? B BMA . O3 ? ? ? 1_555 B MAN . C1 ? ? B BMA 3 B MAN 4 1_555 ? ? ? ? ? ? ? 1.397 ? ? covale9 covale both ? B BMA . O6 ? ? ? 1_555 B MAN . C1 ? ? B BMA 3 B MAN 5 1_555 ? ? ? ? ? ? ? 1.404 ? ? covale10 covale both ? C NAG . O4 ? ? ? 1_555 C NAG . C1 ? ? C NAG 1 C NAG 2 1_555 ? ? ? ? ? ? ? 1.403 ? ? covale11 covale both ? C NAG . O4 ? ? ? 1_555 C BMA . C1 ? ? C NAG 2 C BMA 3 1_555 ? ? ? ? ? ? ? 1.421 ? ? covale12 covale both ? D NAG . O4 ? ? ? 1_555 D NAG . C1 ? ? D NAG 1 D NAG 2 1_555 ? ? ? ? ? ? ? 1.519 ? ? covale13 covale both ? D NAG . O6 ? ? ? 1_555 D FUC . C1 ? ? D NAG 1 D FUC 6 1_555 ? ? ? ? ? ? ? 1.397 ? ? covale14 covale both ? D NAG . O4 ? ? ? 1_555 D BMA . C1 ? ? D NAG 2 D BMA 3 1_555 ? ? ? ? ? ? ? 1.425 ? ? covale15 covale both ? D BMA . O3 ? ? ? 1_555 D MAN . C1 ? ? D BMA 3 D MAN 4 1_555 ? ? ? ? ? ? ? 1.423 ? ? covale16 covale both ? D BMA . O6 ? ? ? 1_555 D MAN . C1 ? ? D BMA 3 D MAN 5 1_555 ? ? ? ? ? ? ? 1.413 ? ? covale17 covale both ? E NAG . O4 ? ? ? 1_555 E NAG . C1 ? ? E NAG 1 E NAG 2 1_555 ? ? ? ? ? ? ? 1.474 ? ? covale18 covale both ? E NAG . O4 ? ? ? 1_555 E BMA . C1 ? ? E NAG 2 E BMA 3 1_555 ? ? ? ? ? ? ? 1.455 ? ? covale19 covale both ? E BMA . O3 ? ? ? 1_555 E MAN . C1 ? ? E BMA 3 E MAN 4 1_555 ? ? ? ? ? ? ? 1.391 ? ? covale20 covale both ? E BMA . O6 ? ? ? 1_555 E MAN . C1 ? ? E BMA 3 E MAN 5 1_555 ? ? ? ? ? ? ? 1.412 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 58 A . ? GLY 115 A GLU 59 A ? GLU 116 A 1 4.02 2 PHE 96 A . ? PHE 153 A PRO 97 A ? PRO 154 A 1 3.06 3 LYS 142 A . ? LYS 199 A PRO 143 A ? PRO 200 A 1 -8.14 4 ASN 239 A . ? ASN 296 A PRO 240 A ? PRO 297 A 1 0.14 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 3 ? C ? 4 ? D ? 3 ? E ? 2 ? F ? 2 ? G ? 2 ? H ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel E 1 2 ? anti-parallel F 1 2 ? parallel G 1 2 ? anti-parallel H 1 2 ? anti-parallel H 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 10 ? VAL A 12 ? THR A 67 VAL A 69 A 2 GLY A 99 ? LEU A 110 ? GLY A 156 LEU A 167 A 3 GLY A 87 ? THR A 95 ? GLY A 144 THR A 152 A 4 ILE A 29 ? ILE A 37 ? ILE A 86 ILE A 94 A 5 SER A 42 ? HIS A 48 ? SER A 99 HIS A 105 A 6 PHE A 54 ? VAL A 56 ? PHE A 111 VAL A 113 B 1 VAL A 17 ? LEU A 19 ? VAL A 74 LEU A 76 B 2 ILE A 76 ? LEU A 78 ? ILE A 133 LEU A 135 B 3 VAL A 64 ? PHE A 66 ? VAL A 121 PHE A 123 C 1 THR A 114 ? LYS A 119 ? THR A 171 LYS A 176 C 2 THR A 131 ? GLY A 141 ? THR A 188 GLY A 198 C 3 ALA A 168 ? LEU A 176 ? ALA A 225 LEU A 233 C 4 SER A 158 ? SER A 162 ? SER A 215 SER A 219 D 1 HIS A 146 ? TRP A 149 ? HIS A 203 TRP A 206 D 2 ARG A 186 ? LYS A 192 ? ARG A 243 LYS A 249 D 3 ILE A 200 ? ILE A 205 ? ILE A 257 ILE A 262 E 1 TYR A 210 ? VAL A 214 ? TYR A 267 VAL A 271 E 2 ALA A 236 ? ASN A 239 ? ALA A 293 ASN A 296 F 1 TRP A 223 ? PHE A 224 ? TRP A 280 PHE A 281 F 2 ILE A 298 ? SER A 299 ? ILE A 355 SER A 356 G 1 ASN A 231 ? LYS A 233 ? ASN A 288 LYS A 290 G 2 THR A 264 ? HIS A 266 ? THR A 321 HIS A 323 H 1 PRO A 242 ? ARG A 249 ? PRO A 299 ARG A 306 H 2 VAL A 278 ? ASN A 285 ? VAL A 335 ASN A 342 H 3 GLY A 288 ? VAL A 295 ? GLY A 345 VAL A 352 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ALA A 11 ? N ALA A 68 O LEU A 110 ? O LEU A 167 A 2 3 O GLY A 99 ? O GLY A 156 N THR A 95 ? N THR A 152 A 3 4 O ILE A 90 ? O ILE A 147 N GLU A 35 ? N GLU A 92 A 4 5 N TRP A 34 ? N TRP A 91 O VAL A 45 ? O VAL A 102 A 5 6 N VAL A 47 ? N VAL A 104 O SER A 55 ? O SER A 112 B 1 2 N LEU A 19 ? N LEU A 76 O ILE A 76 ? O ILE A 133 B 2 3 O THR A 77 ? O THR A 134 N LEU A 65 ? N LEU A 122 C 1 2 N SER A 116 ? N SER A 173 O ILE A 137 ? O ILE A 194 C 2 3 N ALA A 134 ? N ALA A 191 O TYR A 174 ? O TYR A 231 C 3 4 O THR A 169 ? O THR A 226 N THR A 161 ? N THR A 218 D 1 2 N ASP A 148 ? N ASP A 205 O VAL A 190 ? O VAL A 247 D 2 3 N VAL A 191 ? N VAL A 248 O ILE A 200 ? O ILE A 257 E 1 2 N TYR A 210 ? N TYR A 267 O ASN A 239 ? O ASN A 296 F 1 2 N TRP A 223 ? N TRP A 280 O SER A 299 ? O SER A 356 G 1 2 N LEU A 232 ? N LEU A 289 O LEU A 265 ? O LEU A 322 H 1 2 N VAL A 246 ? N VAL A 303 O LYS A 282 ? O LYS A 339 H 2 3 N ASN A 285 ? N ASN A 342 O GLY A 288 ? O GLY A 345 # _database_PDB_matrix.entry_id 4FOM _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4FOM _atom_sites.fract_transf_matrix[1][1] 0.007583 _atom_sites.fract_transf_matrix[1][2] 0.004378 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008757 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004040 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 58 58 GLY GLY A . n A 1 2 PRO 2 59 59 PRO PRO A . n A 1 3 ILE 3 60 60 ILE ILE A . n A 1 4 ILE 4 61 61 ILE ILE A . n A 1 5 VAL 5 62 62 VAL VAL A . n A 1 6 GLU 6 63 63 GLU GLU A . n A 1 7 PRO 7 64 64 PRO PRO A . n A 1 8 HIS 8 65 65 HIS HIS A . n A 1 9 VAL 9 66 66 VAL VAL A . n A 1 10 THR 10 67 67 THR THR A . n A 1 11 ALA 11 68 68 ALA ALA A . n A 1 12 VAL 12 69 69 VAL VAL A . n A 1 13 TRP 13 70 70 TRP TRP A . n A 1 14 GLY 14 71 71 GLY GLY A . n A 1 15 LYS 15 72 72 LYS LYS A . n A 1 16 ASN 16 73 73 ASN ASN A . n A 1 17 VAL 17 74 74 VAL VAL A . n A 1 18 SER 18 75 75 SER SER A . n A 1 19 LEU 19 76 76 LEU LEU A . n A 1 20 LYS 20 77 77 LYS LYS A . n A 1 21 CYS 21 78 78 CYS CYS A . n A 1 22 LEU 22 79 79 LEU LEU A . n A 1 23 ILE 23 80 80 ILE ILE A . n A 1 24 GLU 24 81 81 GLU GLU A . n A 1 25 VAL 25 82 82 VAL VAL A . n A 1 26 ASN 26 83 83 ASN ASN A . n A 1 27 GLU 27 84 84 GLU GLU A . n A 1 28 THR 28 85 85 THR THR A . n A 1 29 ILE 29 86 86 ILE ILE A . n A 1 30 THR 30 87 87 THR THR A . n A 1 31 GLN 31 88 88 GLN GLN A . n A 1 32 ILE 32 89 89 ILE ILE A . n A 1 33 SER 33 90 90 SER SER A . n A 1 34 TRP 34 91 91 TRP TRP A . n A 1 35 GLU 35 92 92 GLU GLU A . n A 1 36 LYS 36 93 93 LYS LYS A . n A 1 37 ILE 37 94 94 ILE ILE A . n A 1 38 HIS 38 95 95 HIS HIS A . n A 1 39 GLY 39 96 96 GLY GLY A . n A 1 40 LYS 40 97 97 LYS LYS A . n A 1 41 SER 41 98 98 SER SER A . n A 1 42 SER 42 99 99 SER SER A . n A 1 43 GLN 43 100 100 GLN GLN A . n A 1 44 THR 44 101 101 THR THR A . n A 1 45 VAL 45 102 102 VAL VAL A . n A 1 46 ALA 46 103 103 ALA ALA A . n A 1 47 VAL 47 104 104 VAL VAL A . n A 1 48 HIS 48 105 105 HIS HIS A . n A 1 49 HIS 49 106 106 HIS HIS A . n A 1 50 PRO 50 107 107 PRO PRO A . n A 1 51 GLN 51 108 108 GLN GLN A . n A 1 52 TYR 52 109 109 TYR TYR A . n A 1 53 GLY 53 110 110 GLY GLY A . n A 1 54 PHE 54 111 111 PHE PHE A . n A 1 55 SER 55 112 112 SER SER A . n A 1 56 VAL 56 113 113 VAL VAL A . n A 1 57 GLN 57 114 114 GLN GLN A . n A 1 58 GLY 58 115 115 GLY GLY A . n A 1 59 GLU 59 116 116 GLU GLU A . n A 1 60 TYR 60 117 117 TYR TYR A . n A 1 61 GLN 61 118 118 GLN GLN A . n A 1 62 GLY 62 119 119 GLY GLY A . n A 1 63 ARG 63 120 120 ARG ARG A . n A 1 64 VAL 64 121 121 VAL VAL A . n A 1 65 LEU 65 122 122 LEU LEU A . n A 1 66 PHE 66 123 123 PHE PHE A . n A 1 67 LYS 67 124 124 LYS LYS A . n A 1 68 ASN 68 125 125 ASN ASN A . n A 1 69 TYR 69 126 126 TYR TYR A . n A 1 70 SER 70 127 127 SER SER A . n A 1 71 LEU 71 128 128 LEU LEU A . n A 1 72 ASN 72 129 129 ASN ASN A . n A 1 73 ASP 73 130 130 ASP ASP A . n A 1 74 ALA 74 131 131 ALA ALA A . n A 1 75 THR 75 132 132 THR THR A . n A 1 76 ILE 76 133 133 ILE ILE A . n A 1 77 THR 77 134 134 THR THR A . n A 1 78 LEU 78 135 135 LEU LEU A . n A 1 79 HIS 79 136 136 HIS HIS A . n A 1 80 ASN 80 137 137 ASN ASN A . n A 1 81 ILE 81 138 138 ILE ILE A . n A 1 82 GLY 82 139 139 GLY GLY A . n A 1 83 PHE 83 140 140 PHE PHE A . n A 1 84 SER 84 141 141 SER SER A . n A 1 85 ASP 85 142 142 ASP ASP A . n A 1 86 SER 86 143 143 SER SER A . n A 1 87 GLY 87 144 144 GLY GLY A . n A 1 88 LYS 88 145 145 LYS LYS A . n A 1 89 TYR 89 146 146 TYR TYR A . n A 1 90 ILE 90 147 147 ILE ILE A . n A 1 91 CYS 91 148 148 CYS CYS A . n A 1 92 LYS 92 149 149 LYS LYS A . n A 1 93 ALA 93 150 150 ALA ALA A . n A 1 94 VAL 94 151 151 VAL VAL A . n A 1 95 THR 95 152 152 THR THR A . n A 1 96 PHE 96 153 153 PHE PHE A . n A 1 97 PRO 97 154 154 PRO PRO A . n A 1 98 LEU 98 155 155 LEU LEU A . n A 1 99 GLY 99 156 156 GLY GLY A . n A 1 100 ASN 100 157 157 ASN ASN A . n A 1 101 ALA 101 158 158 ALA ALA A . n A 1 102 GLN 102 159 159 GLN GLN A . n A 1 103 SER 103 160 160 SER SER A . n A 1 104 SER 104 161 161 SER SER A . n A 1 105 THR 105 162 162 THR THR A . n A 1 106 THR 106 163 163 THR THR A . n A 1 107 VAL 107 164 164 VAL VAL A . n A 1 108 THR 108 165 165 THR THR A . n A 1 109 VAL 109 166 166 VAL VAL A . n A 1 110 LEU 110 167 167 LEU LEU A . n A 1 111 VAL 111 168 168 VAL VAL A . n A 1 112 GLU 112 169 169 GLU GLU A . n A 1 113 PRO 113 170 170 PRO PRO A . n A 1 114 THR 114 171 171 THR THR A . n A 1 115 VAL 115 172 172 VAL VAL A . n A 1 116 SER 116 173 173 SER SER A . n A 1 117 LEU 117 174 174 LEU LEU A . n A 1 118 ILE 118 175 175 ILE ILE A . n A 1 119 LYS 119 176 176 LYS LYS A . n A 1 120 GLY 120 177 177 GLY GLY A . n A 1 121 PRO 121 178 178 PRO PRO A . n A 1 122 ASP 122 179 179 ASP ASP A . n A 1 123 SER 123 180 180 SER SER A . n A 1 124 LEU 124 181 181 LEU LEU A . n A 1 125 ILE 125 182 182 ILE ILE A . n A 1 126 ASP 126 183 183 ASP ASP A . n A 1 127 GLY 127 184 184 GLY GLY A . n A 1 128 GLY 128 185 185 GLY GLY A . n A 1 129 ASN 129 186 186 ASN ASN A . n A 1 130 GLU 130 187 187 GLU GLU A . n A 1 131 THR 131 188 188 THR THR A . n A 1 132 VAL 132 189 189 VAL VAL A . n A 1 133 ALA 133 190 190 ALA ALA A . n A 1 134 ALA 134 191 191 ALA ALA A . n A 1 135 ILE 135 192 192 ILE ILE A . n A 1 136 CYS 136 193 193 CYS CYS A . n A 1 137 ILE 137 194 194 ILE ILE A . n A 1 138 ALA 138 195 195 ALA ALA A . n A 1 139 ALA 139 196 196 ALA ALA A . n A 1 140 THR 140 197 197 THR THR A . n A 1 141 GLY 141 198 198 GLY GLY A . n A 1 142 LYS 142 199 199 LYS LYS A . n A 1 143 PRO 143 200 200 PRO PRO A . n A 1 144 VAL 144 201 201 VAL VAL A . n A 1 145 ALA 145 202 202 ALA ALA A . n A 1 146 HIS 146 203 203 HIS HIS A . n A 1 147 ILE 147 204 204 ILE ILE A . n A 1 148 ASP 148 205 205 ASP ASP A . n A 1 149 TRP 149 206 206 TRP TRP A . n A 1 150 GLU 150 207 207 GLU GLU A . n A 1 151 GLY 151 208 208 GLY GLY A . n A 1 152 ASP 152 209 209 ASP ASP A . n A 1 153 LEU 153 210 210 LEU LEU A . n A 1 154 GLY 154 211 211 GLY GLY A . n A 1 155 GLU 155 212 212 GLU GLU A . n A 1 156 MET 156 213 213 MET MET A . n A 1 157 GLU 157 214 214 GLU GLU A . n A 1 158 SER 158 215 215 SER SER A . n A 1 159 THR 159 216 216 THR THR A . n A 1 160 THR 160 217 217 THR THR A . n A 1 161 THR 161 218 218 THR THR A . n A 1 162 SER 162 219 219 SER SER A . n A 1 163 PHE 163 220 220 PHE PHE A . n A 1 164 PRO 164 221 221 PRO PRO A . n A 1 165 ASN 165 222 222 ASN ASN A . n A 1 166 GLU 166 223 223 GLU GLU A . n A 1 167 THR 167 224 224 THR THR A . n A 1 168 ALA 168 225 225 ALA ALA A . n A 1 169 THR 169 226 226 THR THR A . n A 1 170 ILE 170 227 227 ILE ILE A . n A 1 171 ILE 171 228 228 ILE ILE A . n A 1 172 SER 172 229 229 SER SER A . n A 1 173 GLN 173 230 230 GLN GLN A . n A 1 174 TYR 174 231 231 TYR TYR A . n A 1 175 LYS 175 232 232 LYS LYS A . n A 1 176 LEU 176 233 233 LEU LEU A . n A 1 177 PHE 177 234 234 PHE PHE A . n A 1 178 PRO 178 235 235 PRO PRO A . n A 1 179 THR 179 236 236 THR THR A . n A 1 180 ARG 180 237 237 ARG ARG A . n A 1 181 PHE 181 238 238 PHE PHE A . n A 1 182 ALA 182 239 239 ALA ALA A . n A 1 183 ARG 183 240 240 ARG ARG A . n A 1 184 GLY 184 241 241 GLY GLY A . n A 1 185 ARG 185 242 242 ARG ARG A . n A 1 186 ARG 186 243 243 ARG ARG A . n A 1 187 ILE 187 244 244 ILE ILE A . n A 1 188 THR 188 245 245 THR THR A . n A 1 189 CYS 189 246 246 CYS CYS A . n A 1 190 VAL 190 247 247 VAL VAL A . n A 1 191 VAL 191 248 248 VAL VAL A . n A 1 192 LYS 192 249 249 LYS LYS A . n A 1 193 HIS 193 250 250 HIS HIS A . n A 1 194 PRO 194 251 251 PRO PRO A . n A 1 195 ALA 195 252 252 ALA ALA A . n A 1 196 LEU 196 253 253 LEU LEU A . n A 1 197 GLU 197 254 254 GLU GLU A . n A 1 198 LYS 198 255 255 LYS LYS A . n A 1 199 ASP 199 256 256 ASP ASP A . n A 1 200 ILE 200 257 257 ILE ILE A . n A 1 201 ARG 201 258 258 ARG ARG A . n A 1 202 TYR 202 259 259 TYR TYR A . n A 1 203 SER 203 260 260 SER SER A . n A 1 204 PHE 204 261 261 PHE PHE A . n A 1 205 ILE 205 262 262 ILE ILE A . n A 1 206 LEU 206 263 263 LEU LEU A . n A 1 207 ASP 207 264 264 ASP ASP A . n A 1 208 ILE 208 265 265 ILE ILE A . n A 1 209 GLN 209 266 266 GLN GLN A . n A 1 210 TYR 210 267 267 TYR TYR A . n A 1 211 ALA 211 268 268 ALA ALA A . n A 1 212 PRO 212 269 269 PRO PRO A . n A 1 213 GLU 213 270 270 GLU GLU A . n A 1 214 VAL 214 271 271 VAL VAL A . n A 1 215 SER 215 272 272 SER SER A . n A 1 216 VAL 216 273 273 VAL VAL A . n A 1 217 THR 217 274 274 THR THR A . n A 1 218 GLY 218 275 275 GLY GLY A . n A 1 219 TYR 219 276 276 TYR TYR A . n A 1 220 ASP 220 277 277 ASP ASP A . n A 1 221 GLY 221 278 278 GLY GLY A . n A 1 222 ASN 222 279 279 ASN ASN A . n A 1 223 TRP 223 280 280 TRP TRP A . n A 1 224 PHE 224 281 281 PHE PHE A . n A 1 225 VAL 225 282 282 VAL VAL A . n A 1 226 GLY 226 283 283 GLY GLY A . n A 1 227 ARG 227 284 284 ARG ARG A . n A 1 228 LYS 228 285 285 LYS LYS A . n A 1 229 GLY 229 286 286 GLY GLY A . n A 1 230 VAL 230 287 287 VAL VAL A . n A 1 231 ASN 231 288 288 ASN ASN A . n A 1 232 LEU 232 289 289 LEU LEU A . n A 1 233 LYS 233 290 290 LYS LYS A . n A 1 234 CYS 234 291 291 CYS CYS A . n A 1 235 ASN 235 292 292 ASN ASN A . n A 1 236 ALA 236 293 293 ALA ALA A . n A 1 237 ASP 237 294 294 ASP ASP A . n A 1 238 ALA 238 295 295 ALA ALA A . n A 1 239 ASN 239 296 296 ASN ASN A . n A 1 240 PRO 240 297 297 PRO PRO A . n A 1 241 PRO 241 298 298 PRO PRO A . n A 1 242 PRO 242 299 299 PRO PRO A . n A 1 243 PHE 243 300 300 PHE PHE A . n A 1 244 LYS 244 301 301 LYS LYS A . n A 1 245 SER 245 302 302 SER SER A . n A 1 246 VAL 246 303 303 VAL VAL A . n A 1 247 TRP 247 304 304 TRP TRP A . n A 1 248 SER 248 305 305 SER SER A . n A 1 249 ARG 249 306 306 ARG ARG A . n A 1 250 LEU 250 307 307 LEU LEU A . n A 1 251 ASP 251 308 308 ASP ASP A . n A 1 252 GLY 252 309 309 GLY GLY A . n A 1 253 GLN 253 310 310 GLN GLN A . n A 1 254 TRP 254 311 311 TRP TRP A . n A 1 255 PRO 255 312 312 PRO PRO A . n A 1 256 ASP 256 313 313 ASP ASP A . n A 1 257 GLY 257 314 314 GLY GLY A . n A 1 258 LEU 258 315 315 LEU LEU A . n A 1 259 LEU 259 316 316 LEU LEU A . n A 1 260 ALA 260 317 317 ALA ALA A . n A 1 261 SER 261 318 318 SER SER A . n A 1 262 ASP 262 319 319 ASP ASP A . n A 1 263 ASN 263 320 320 ASN ASN A . n A 1 264 THR 264 321 321 THR THR A . n A 1 265 LEU 265 322 322 LEU LEU A . n A 1 266 HIS 266 323 323 HIS HIS A . n A 1 267 PHE 267 324 324 PHE PHE A . n A 1 268 VAL 268 325 325 VAL VAL A . n A 1 269 HIS 269 326 326 HIS HIS A . n A 1 270 PRO 270 327 327 PRO PRO A . n A 1 271 LEU 271 328 328 LEU LEU A . n A 1 272 THR 272 329 329 THR THR A . n A 1 273 PHE 273 330 330 PHE PHE A . n A 1 274 ASN 274 331 331 ASN ASN A . n A 1 275 TYR 275 332 332 TYR TYR A . n A 1 276 SER 276 333 333 SER SER A . n A 1 277 GLY 277 334 334 GLY GLY A . n A 1 278 VAL 278 335 335 VAL VAL A . n A 1 279 TYR 279 336 336 TYR TYR A . n A 1 280 ILE 280 337 337 ILE ILE A . n A 1 281 CYS 281 338 338 CYS CYS A . n A 1 282 LYS 282 339 339 LYS LYS A . n A 1 283 VAL 283 340 340 VAL VAL A . n A 1 284 THR 284 341 341 THR THR A . n A 1 285 ASN 285 342 342 ASN ASN A . n A 1 286 SER 286 343 343 SER SER A . n A 1 287 LEU 287 344 344 LEU LEU A . n A 1 288 GLY 288 345 345 GLY GLY A . n A 1 289 GLN 289 346 346 GLN GLN A . n A 1 290 ARG 290 347 347 ARG ARG A . n A 1 291 SER 291 348 348 SER SER A . n A 1 292 ASP 292 349 349 ASP ASP A . n A 1 293 GLN 293 350 350 GLN GLN A . n A 1 294 LYS 294 351 351 LYS LYS A . n A 1 295 VAL 295 352 352 VAL VAL A . n A 1 296 ILE 296 353 353 ILE ILE A . n A 1 297 TYR 297 354 354 TYR TYR A . n A 1 298 ILE 298 355 355 ILE ILE A . n A 1 299 SER 299 356 356 SER SER A . n A 1 300 ASP 300 357 357 ASP ASP A . n A 1 301 PRO 301 358 358 PRO PRO A . n A 1 302 PRO 302 359 359 PRO PRO A . n A 1 303 HIS 303 360 ? ? ? A . n A 1 304 HIS 304 361 ? ? ? A . n A 1 305 HIS 305 362 ? ? ? A . n A 1 306 HIS 306 363 ? ? ? A . n A 1 307 HIS 307 364 ? ? ? A . n A 1 308 HIS 308 365 ? ? ? A . n # _pdbx_nonpoly_scheme.asym_id F _pdbx_nonpoly_scheme.entity_id 5 _pdbx_nonpoly_scheme.mon_id NAG _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 420 _pdbx_nonpoly_scheme.auth_seq_num 420 _pdbx_nonpoly_scheme.pdb_mon_id NAG _pdbx_nonpoly_scheme.auth_mon_id NAG _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 129 A ASN 186 ? ASN 'GLYCOSYLATION SITE' 2 A ASN 16 A ASN 73 ? ASN 'GLYCOSYLATION SITE' 3 A ASN 68 A ASN 125 ? ASN 'GLYCOSYLATION SITE' 4 A ASN 274 A ASN 331 ? ASN 'GLYCOSYLATION SITE' 5 A ASN 165 A ASN 222 ? ASN 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/6 0.5000000000 0.8660254038 0.0000000000 -65.9335000000 0.8660254038 -0.5000000000 0.0000000000 114.2001719208 0.0000000000 0.0000000000 -1.0000000000 -41.2571666667 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-08-22 2 'Structure model' 1 1 2012-09-05 3 'Structure model' 1 2 2012-09-26 4 'Structure model' 2 0 2020-07-29 5 'Structure model' 2 1 2023-09-13 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Atomic model' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' 'Structure summary' 9 5 'Structure model' 'Data collection' 10 5 'Structure model' 'Database references' 11 5 'Structure model' 'Refinement description' 12 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' entity 4 4 'Structure model' pdbx_branch_scheme 5 4 'Structure model' pdbx_chem_comp_identifier 6 4 'Structure model' pdbx_entity_branch 7 4 'Structure model' pdbx_entity_branch_descriptor 8 4 'Structure model' pdbx_entity_branch_link 9 4 'Structure model' pdbx_entity_branch_list 10 4 'Structure model' pdbx_entity_nonpoly 11 4 'Structure model' pdbx_nonpoly_scheme 12 4 'Structure model' pdbx_struct_assembly_gen 13 4 'Structure model' pdbx_validate_close_contact 14 4 'Structure model' struct_asym 15 4 'Structure model' struct_conn 16 4 'Structure model' struct_ref_seq_dif 17 4 'Structure model' struct_site 18 4 'Structure model' struct_site_gen 19 5 'Structure model' chem_comp 20 5 'Structure model' chem_comp_atom 21 5 'Structure model' chem_comp_bond 22 5 'Structure model' database_2 23 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.B_iso_or_equiv' 2 4 'Structure model' '_atom_site.Cartn_x' 3 4 'Structure model' '_atom_site.Cartn_y' 4 4 'Structure model' '_atom_site.Cartn_z' 5 4 'Structure model' '_atom_site.auth_asym_id' 6 4 'Structure model' '_atom_site.auth_atom_id' 7 4 'Structure model' '_atom_site.auth_comp_id' 8 4 'Structure model' '_atom_site.auth_seq_id' 9 4 'Structure model' '_atom_site.label_asym_id' 10 4 'Structure model' '_atom_site.label_atom_id' 11 4 'Structure model' '_atom_site.label_comp_id' 12 4 'Structure model' '_atom_site.label_entity_id' 13 4 'Structure model' '_atom_site.type_symbol' 14 4 'Structure model' '_chem_comp.name' 15 4 'Structure model' '_chem_comp.type' 16 4 'Structure model' '_entity.formula_weight' 17 4 'Structure model' '_entity.pdbx_description' 18 4 'Structure model' '_entity.pdbx_number_of_molecules' 19 4 'Structure model' '_entity.type' 20 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 21 4 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_1' 22 4 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_2' 23 4 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_1' 24 4 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_2' 25 4 'Structure model' '_struct_conn.pdbx_dist_value' 26 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 27 4 'Structure model' '_struct_conn.pdbx_role' 28 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 29 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 30 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 31 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 32 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 33 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 34 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 35 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 36 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 37 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 38 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 39 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 40 4 'Structure model' '_struct_ref_seq_dif.details' 41 5 'Structure model' '_chem_comp.pdbx_synonyms' 42 5 'Structure model' '_database_2.pdbx_DOI' 43 5 'Structure model' '_database_2.pdbx_database_accession' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -38.0574 38.2624 -18.6403 1.9288 0.3630 2.2114 0.8083 0.1545 -0.0733 23.7302 3.3393 5.1183 -8.4941 1.7204 -0.3595 -0.1647 -0.4974 -0.6993 0.2556 0.1807 1.0239 -0.3135 -0.3375 -0.0160 'X-RAY DIFFRACTION' 2 ? refined -1.7516 17.5426 -13.5384 0.9577 0.3490 0.5263 -0.0074 0.1391 -0.1416 10.9489 8.8400 6.1239 -8.4624 5.1878 -3.6662 -0.2099 -0.9265 0.6322 0.3906 0.1480 0.0974 -1.2822 -0.1170 0.0619 'X-RAY DIFFRACTION' 3 ? refined 22.0198 -17.6716 0.5228 0.7843 0.8690 0.7482 0.4524 0.0882 0.0939 4.9135 12.1116 15.0762 -5.6370 6.4061 -9.3634 0.2104 -0.1544 -0.4447 0.2378 -0.4041 -0.5041 1.3336 1.7918 0.1938 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 58 ? ? A 168 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 169 ? ? A 266 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 267 ? ? A 359 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 PHASER phasing . ? 2 REFMAC refinement 5.6.0117 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OD1 A ASN 186 ? ? C1 D NAG 1 ? ? 1.84 2 1 ND2 A ASN 186 ? ? O5 D NAG 1 ? ? 1.92 3 1 CG A ASN 186 ? ? C1 D NAG 1 ? ? 1.93 4 1 O4 C NAG 1 ? ? C2 C NAG 2 ? ? 2.05 5 1 ND2 A ASN 222 ? ? O5 E NAG 1 ? ? 2.18 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CG _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 ASN _pdbx_validate_rmsd_bond.auth_seq_id_1 186 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 ND2 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 ASN _pdbx_validate_rmsd_bond.auth_seq_id_2 186 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.173 _pdbx_validate_rmsd_bond.bond_target_value 1.324 _pdbx_validate_rmsd_bond.bond_deviation -0.151 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.025 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A PHE 153 ? ? CA A PHE 153 ? ? C A PHE 153 ? ? 97.34 110.40 -13.06 2.00 N 2 1 N A PRO 154 ? ? CA A PRO 154 ? ? CB A PRO 154 ? ? 85.98 102.60 -16.62 1.10 N 3 1 N A PRO 154 ? ? CD A PRO 154 ? ? CG A PRO 154 ? ? 87.64 103.80 -16.16 1.20 N 4 1 N A PRO 154 ? ? CA A PRO 154 ? ? C A PRO 154 ? ? 133.91 112.10 21.81 2.60 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 81 ? ? -65.71 83.46 2 1 ASN A 83 ? ? -58.18 0.11 3 1 LYS A 97 ? ? 69.88 -9.40 4 1 TYR A 109 ? ? -107.92 54.08 5 1 TYR A 117 ? ? -67.40 1.35 6 1 ASN A 137 ? ? 63.16 75.64 7 1 LEU A 155 ? ? -33.47 -37.76 8 1 ASN A 186 ? ? -43.71 153.01 9 1 GLU A 187 ? ? -38.13 139.08 10 1 ASP A 205 ? ? -174.50 134.26 11 1 GLU A 214 ? ? 175.34 153.84 12 1 ASN A 222 ? ? -55.19 -6.20 13 1 CYS A 291 ? ? -95.86 32.42 14 1 ASN A 292 ? ? -35.54 132.96 15 1 PHE A 300 ? ? -122.69 -51.12 16 1 SER A 302 ? ? -145.03 47.17 17 1 TRP A 304 ? ? -114.35 61.16 18 1 ALA A 317 ? ? -116.40 65.11 19 1 ASP A 319 ? ? 57.57 -117.15 20 1 PHE A 324 ? ? -116.13 75.63 21 1 PRO A 327 ? ? -48.06 150.25 22 1 TYR A 332 ? ? 84.51 -6.35 23 1 SER A 343 ? ? -36.06 -38.05 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS 360 ? A HIS 303 2 1 Y 1 A HIS 361 ? A HIS 304 3 1 Y 1 A HIS 362 ? A HIS 305 4 1 Y 1 A HIS 363 ? A HIS 306 5 1 Y 1 A HIS 364 ? A HIS 307 6 1 Y 1 A HIS 365 ? A HIS 308 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BMA C1 C N R 74 BMA C2 C N S 75 BMA C3 C N S 76 BMA C4 C N S 77 BMA C5 C N R 78 BMA C6 C N N 79 BMA O1 O N N 80 BMA O2 O N N 81 BMA O3 O N N 82 BMA O4 O N N 83 BMA O5 O N N 84 BMA O6 O N N 85 BMA H1 H N N 86 BMA H2 H N N 87 BMA H3 H N N 88 BMA H4 H N N 89 BMA H5 H N N 90 BMA H61 H N N 91 BMA H62 H N N 92 BMA HO1 H N N 93 BMA HO2 H N N 94 BMA HO3 H N N 95 BMA HO4 H N N 96 BMA HO6 H N N 97 CYS N N N N 98 CYS CA C N R 99 CYS C C N N 100 CYS O O N N 101 CYS CB C N N 102 CYS SG S N N 103 CYS OXT O N N 104 CYS H H N N 105 CYS H2 H N N 106 CYS HA H N N 107 CYS HB2 H N N 108 CYS HB3 H N N 109 CYS HG H N N 110 CYS HXT H N N 111 FUC C1 C N R 112 FUC C2 C N S 113 FUC C3 C N R 114 FUC C4 C N S 115 FUC C5 C N S 116 FUC C6 C N N 117 FUC O1 O N N 118 FUC O2 O N N 119 FUC O3 O N N 120 FUC O4 O N N 121 FUC O5 O N N 122 FUC H1 H N N 123 FUC H2 H N N 124 FUC H3 H N N 125 FUC H4 H N N 126 FUC H5 H N N 127 FUC H61 H N N 128 FUC H62 H N N 129 FUC H63 H N N 130 FUC HO1 H N N 131 FUC HO2 H N N 132 FUC HO3 H N N 133 FUC HO4 H N N 134 GLN N N N N 135 GLN CA C N S 136 GLN C C N N 137 GLN O O N N 138 GLN CB C N N 139 GLN CG C N N 140 GLN CD C N N 141 GLN OE1 O N N 142 GLN NE2 N N N 143 GLN OXT O N N 144 GLN H H N N 145 GLN H2 H N N 146 GLN HA H N N 147 GLN HB2 H N N 148 GLN HB3 H N N 149 GLN HG2 H N N 150 GLN HG3 H N N 151 GLN HE21 H N N 152 GLN HE22 H N N 153 GLN HXT H N N 154 GLU N N N N 155 GLU CA C N S 156 GLU C C N N 157 GLU O O N N 158 GLU CB C N N 159 GLU CG C N N 160 GLU CD C N N 161 GLU OE1 O N N 162 GLU OE2 O N N 163 GLU OXT O N N 164 GLU H H N N 165 GLU H2 H N N 166 GLU HA H N N 167 GLU HB2 H N N 168 GLU HB3 H N N 169 GLU HG2 H N N 170 GLU HG3 H N N 171 GLU HE2 H N N 172 GLU HXT H N N 173 GLY N N N N 174 GLY CA C N N 175 GLY C C N N 176 GLY O O N N 177 GLY OXT O N N 178 GLY H H N N 179 GLY H2 H N N 180 GLY HA2 H N N 181 GLY HA3 H N N 182 GLY HXT H N N 183 HIS N N N N 184 HIS CA C N S 185 HIS C C N N 186 HIS O O N N 187 HIS CB C N N 188 HIS CG C Y N 189 HIS ND1 N Y N 190 HIS CD2 C Y N 191 HIS CE1 C Y N 192 HIS NE2 N Y N 193 HIS OXT O N N 194 HIS H H N N 195 HIS H2 H N N 196 HIS HA H N N 197 HIS HB2 H N N 198 HIS HB3 H N N 199 HIS HD1 H N N 200 HIS HD2 H N N 201 HIS HE1 H N N 202 HIS HE2 H N N 203 HIS HXT H N N 204 ILE N N N N 205 ILE CA C N S 206 ILE C C N N 207 ILE O O N N 208 ILE CB C N S 209 ILE CG1 C N N 210 ILE CG2 C N N 211 ILE CD1 C N N 212 ILE OXT O N N 213 ILE H H N N 214 ILE H2 H N N 215 ILE HA H N N 216 ILE HB H N N 217 ILE HG12 H N N 218 ILE HG13 H N N 219 ILE HG21 H N N 220 ILE HG22 H N N 221 ILE HG23 H N N 222 ILE HD11 H N N 223 ILE HD12 H N N 224 ILE HD13 H N N 225 ILE HXT H N N 226 LEU N N N N 227 LEU CA C N S 228 LEU C C N N 229 LEU O O N N 230 LEU CB C N N 231 LEU CG C N N 232 LEU CD1 C N N 233 LEU CD2 C N N 234 LEU OXT O N N 235 LEU H H N N 236 LEU H2 H N N 237 LEU HA H N N 238 LEU HB2 H N N 239 LEU HB3 H N N 240 LEU HG H N N 241 LEU HD11 H N N 242 LEU HD12 H N N 243 LEU HD13 H N N 244 LEU HD21 H N N 245 LEU HD22 H N N 246 LEU HD23 H N N 247 LEU HXT H N N 248 LYS N N N N 249 LYS CA C N S 250 LYS C C N N 251 LYS O O N N 252 LYS CB C N N 253 LYS CG C N N 254 LYS CD C N N 255 LYS CE C N N 256 LYS NZ N N N 257 LYS OXT O N N 258 LYS H H N N 259 LYS H2 H N N 260 LYS HA H N N 261 LYS HB2 H N N 262 LYS HB3 H N N 263 LYS HG2 H N N 264 LYS HG3 H N N 265 LYS HD2 H N N 266 LYS HD3 H N N 267 LYS HE2 H N N 268 LYS HE3 H N N 269 LYS HZ1 H N N 270 LYS HZ2 H N N 271 LYS HZ3 H N N 272 LYS HXT H N N 273 MAN C1 C N S 274 MAN C2 C N S 275 MAN C3 C N S 276 MAN C4 C N S 277 MAN C5 C N R 278 MAN C6 C N N 279 MAN O1 O N N 280 MAN O2 O N N 281 MAN O3 O N N 282 MAN O4 O N N 283 MAN O5 O N N 284 MAN O6 O N N 285 MAN H1 H N N 286 MAN H2 H N N 287 MAN H3 H N N 288 MAN H4 H N N 289 MAN H5 H N N 290 MAN H61 H N N 291 MAN H62 H N N 292 MAN HO1 H N N 293 MAN HO2 H N N 294 MAN HO3 H N N 295 MAN HO4 H N N 296 MAN HO6 H N N 297 MET N N N N 298 MET CA C N S 299 MET C C N N 300 MET O O N N 301 MET CB C N N 302 MET CG C N N 303 MET SD S N N 304 MET CE C N N 305 MET OXT O N N 306 MET H H N N 307 MET H2 H N N 308 MET HA H N N 309 MET HB2 H N N 310 MET HB3 H N N 311 MET HG2 H N N 312 MET HG3 H N N 313 MET HE1 H N N 314 MET HE2 H N N 315 MET HE3 H N N 316 MET HXT H N N 317 NAG C1 C N R 318 NAG C2 C N R 319 NAG C3 C N R 320 NAG C4 C N S 321 NAG C5 C N R 322 NAG C6 C N N 323 NAG C7 C N N 324 NAG C8 C N N 325 NAG N2 N N N 326 NAG O1 O N N 327 NAG O3 O N N 328 NAG O4 O N N 329 NAG O5 O N N 330 NAG O6 O N N 331 NAG O7 O N N 332 NAG H1 H N N 333 NAG H2 H N N 334 NAG H3 H N N 335 NAG H4 H N N 336 NAG H5 H N N 337 NAG H61 H N N 338 NAG H62 H N N 339 NAG H81 H N N 340 NAG H82 H N N 341 NAG H83 H N N 342 NAG HN2 H N N 343 NAG HO1 H N N 344 NAG HO3 H N N 345 NAG HO4 H N N 346 NAG HO6 H N N 347 PHE N N N N 348 PHE CA C N S 349 PHE C C N N 350 PHE O O N N 351 PHE CB C N N 352 PHE CG C Y N 353 PHE CD1 C Y N 354 PHE CD2 C Y N 355 PHE CE1 C Y N 356 PHE CE2 C Y N 357 PHE CZ C Y N 358 PHE OXT O N N 359 PHE H H N N 360 PHE H2 H N N 361 PHE HA H N N 362 PHE HB2 H N N 363 PHE HB3 H N N 364 PHE HD1 H N N 365 PHE HD2 H N N 366 PHE HE1 H N N 367 PHE HE2 H N N 368 PHE HZ H N N 369 PHE HXT H N N 370 PRO N N N N 371 PRO CA C N S 372 PRO C C N N 373 PRO O O N N 374 PRO CB C N N 375 PRO CG C N N 376 PRO CD C N N 377 PRO OXT O N N 378 PRO H H N N 379 PRO HA H N N 380 PRO HB2 H N N 381 PRO HB3 H N N 382 PRO HG2 H N N 383 PRO HG3 H N N 384 PRO HD2 H N N 385 PRO HD3 H N N 386 PRO HXT H N N 387 SER N N N N 388 SER CA C N S 389 SER C C N N 390 SER O O N N 391 SER CB C N N 392 SER OG O N N 393 SER OXT O N N 394 SER H H N N 395 SER H2 H N N 396 SER HA H N N 397 SER HB2 H N N 398 SER HB3 H N N 399 SER HG H N N 400 SER HXT H N N 401 THR N N N N 402 THR CA C N S 403 THR C C N N 404 THR O O N N 405 THR CB C N R 406 THR OG1 O N N 407 THR CG2 C N N 408 THR OXT O N N 409 THR H H N N 410 THR H2 H N N 411 THR HA H N N 412 THR HB H N N 413 THR HG1 H N N 414 THR HG21 H N N 415 THR HG22 H N N 416 THR HG23 H N N 417 THR HXT H N N 418 TRP N N N N 419 TRP CA C N S 420 TRP C C N N 421 TRP O O N N 422 TRP CB C N N 423 TRP CG C Y N 424 TRP CD1 C Y N 425 TRP CD2 C Y N 426 TRP NE1 N Y N 427 TRP CE2 C Y N 428 TRP CE3 C Y N 429 TRP CZ2 C Y N 430 TRP CZ3 C Y N 431 TRP CH2 C Y N 432 TRP OXT O N N 433 TRP H H N N 434 TRP H2 H N N 435 TRP HA H N N 436 TRP HB2 H N N 437 TRP HB3 H N N 438 TRP HD1 H N N 439 TRP HE1 H N N 440 TRP HE3 H N N 441 TRP HZ2 H N N 442 TRP HZ3 H N N 443 TRP HH2 H N N 444 TRP HXT H N N 445 TYR N N N N 446 TYR CA C N S 447 TYR C C N N 448 TYR O O N N 449 TYR CB C N N 450 TYR CG C Y N 451 TYR CD1 C Y N 452 TYR CD2 C Y N 453 TYR CE1 C Y N 454 TYR CE2 C Y N 455 TYR CZ C Y N 456 TYR OH O N N 457 TYR OXT O N N 458 TYR H H N N 459 TYR H2 H N N 460 TYR HA H N N 461 TYR HB2 H N N 462 TYR HB3 H N N 463 TYR HD1 H N N 464 TYR HD2 H N N 465 TYR HE1 H N N 466 TYR HE2 H N N 467 TYR HH H N N 468 TYR HXT H N N 469 VAL N N N N 470 VAL CA C N S 471 VAL C C N N 472 VAL O O N N 473 VAL CB C N N 474 VAL CG1 C N N 475 VAL CG2 C N N 476 VAL OXT O N N 477 VAL H H N N 478 VAL H2 H N N 479 VAL HA H N N 480 VAL HB H N N 481 VAL HG11 H N N 482 VAL HG12 H N N 483 VAL HG13 H N N 484 VAL HG21 H N N 485 VAL HG22 H N N 486 VAL HG23 H N N 487 VAL HXT H N N 488 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BMA C1 C2 sing N N 70 BMA C1 O1 sing N N 71 BMA C1 O5 sing N N 72 BMA C1 H1 sing N N 73 BMA C2 C3 sing N N 74 BMA C2 O2 sing N N 75 BMA C2 H2 sing N N 76 BMA C3 C4 sing N N 77 BMA C3 O3 sing N N 78 BMA C3 H3 sing N N 79 BMA C4 C5 sing N N 80 BMA C4 O4 sing N N 81 BMA C4 H4 sing N N 82 BMA C5 C6 sing N N 83 BMA C5 O5 sing N N 84 BMA C5 H5 sing N N 85 BMA C6 O6 sing N N 86 BMA C6 H61 sing N N 87 BMA C6 H62 sing N N 88 BMA O1 HO1 sing N N 89 BMA O2 HO2 sing N N 90 BMA O3 HO3 sing N N 91 BMA O4 HO4 sing N N 92 BMA O6 HO6 sing N N 93 CYS N CA sing N N 94 CYS N H sing N N 95 CYS N H2 sing N N 96 CYS CA C sing N N 97 CYS CA CB sing N N 98 CYS CA HA sing N N 99 CYS C O doub N N 100 CYS C OXT sing N N 101 CYS CB SG sing N N 102 CYS CB HB2 sing N N 103 CYS CB HB3 sing N N 104 CYS SG HG sing N N 105 CYS OXT HXT sing N N 106 FUC C1 C2 sing N N 107 FUC C1 O1 sing N N 108 FUC C1 O5 sing N N 109 FUC C1 H1 sing N N 110 FUC C2 C3 sing N N 111 FUC C2 O2 sing N N 112 FUC C2 H2 sing N N 113 FUC C3 C4 sing N N 114 FUC C3 O3 sing N N 115 FUC C3 H3 sing N N 116 FUC C4 C5 sing N N 117 FUC C4 O4 sing N N 118 FUC C4 H4 sing N N 119 FUC C5 C6 sing N N 120 FUC C5 O5 sing N N 121 FUC C5 H5 sing N N 122 FUC C6 H61 sing N N 123 FUC C6 H62 sing N N 124 FUC C6 H63 sing N N 125 FUC O1 HO1 sing N N 126 FUC O2 HO2 sing N N 127 FUC O3 HO3 sing N N 128 FUC O4 HO4 sing N N 129 GLN N CA sing N N 130 GLN N H sing N N 131 GLN N H2 sing N N 132 GLN CA C sing N N 133 GLN CA CB sing N N 134 GLN CA HA sing N N 135 GLN C O doub N N 136 GLN C OXT sing N N 137 GLN CB CG sing N N 138 GLN CB HB2 sing N N 139 GLN CB HB3 sing N N 140 GLN CG CD sing N N 141 GLN CG HG2 sing N N 142 GLN CG HG3 sing N N 143 GLN CD OE1 doub N N 144 GLN CD NE2 sing N N 145 GLN NE2 HE21 sing N N 146 GLN NE2 HE22 sing N N 147 GLN OXT HXT sing N N 148 GLU N CA sing N N 149 GLU N H sing N N 150 GLU N H2 sing N N 151 GLU CA C sing N N 152 GLU CA CB sing N N 153 GLU CA HA sing N N 154 GLU C O doub N N 155 GLU C OXT sing N N 156 GLU CB CG sing N N 157 GLU CB HB2 sing N N 158 GLU CB HB3 sing N N 159 GLU CG CD sing N N 160 GLU CG HG2 sing N N 161 GLU CG HG3 sing N N 162 GLU CD OE1 doub N N 163 GLU CD OE2 sing N N 164 GLU OE2 HE2 sing N N 165 GLU OXT HXT sing N N 166 GLY N CA sing N N 167 GLY N H sing N N 168 GLY N H2 sing N N 169 GLY CA C sing N N 170 GLY CA HA2 sing N N 171 GLY CA HA3 sing N N 172 GLY C O doub N N 173 GLY C OXT sing N N 174 GLY OXT HXT sing N N 175 HIS N CA sing N N 176 HIS N H sing N N 177 HIS N H2 sing N N 178 HIS CA C sing N N 179 HIS CA CB sing N N 180 HIS CA HA sing N N 181 HIS C O doub N N 182 HIS C OXT sing N N 183 HIS CB CG sing N N 184 HIS CB HB2 sing N N 185 HIS CB HB3 sing N N 186 HIS CG ND1 sing Y N 187 HIS CG CD2 doub Y N 188 HIS ND1 CE1 doub Y N 189 HIS ND1 HD1 sing N N 190 HIS CD2 NE2 sing Y N 191 HIS CD2 HD2 sing N N 192 HIS CE1 NE2 sing Y N 193 HIS CE1 HE1 sing N N 194 HIS NE2 HE2 sing N N 195 HIS OXT HXT sing N N 196 ILE N CA sing N N 197 ILE N H sing N N 198 ILE N H2 sing N N 199 ILE CA C sing N N 200 ILE CA CB sing N N 201 ILE CA HA sing N N 202 ILE C O doub N N 203 ILE C OXT sing N N 204 ILE CB CG1 sing N N 205 ILE CB CG2 sing N N 206 ILE CB HB sing N N 207 ILE CG1 CD1 sing N N 208 ILE CG1 HG12 sing N N 209 ILE CG1 HG13 sing N N 210 ILE CG2 HG21 sing N N 211 ILE CG2 HG22 sing N N 212 ILE CG2 HG23 sing N N 213 ILE CD1 HD11 sing N N 214 ILE CD1 HD12 sing N N 215 ILE CD1 HD13 sing N N 216 ILE OXT HXT sing N N 217 LEU N CA sing N N 218 LEU N H sing N N 219 LEU N H2 sing N N 220 LEU CA C sing N N 221 LEU CA CB sing N N 222 LEU CA HA sing N N 223 LEU C O doub N N 224 LEU C OXT sing N N 225 LEU CB CG sing N N 226 LEU CB HB2 sing N N 227 LEU CB HB3 sing N N 228 LEU CG CD1 sing N N 229 LEU CG CD2 sing N N 230 LEU CG HG sing N N 231 LEU CD1 HD11 sing N N 232 LEU CD1 HD12 sing N N 233 LEU CD1 HD13 sing N N 234 LEU CD2 HD21 sing N N 235 LEU CD2 HD22 sing N N 236 LEU CD2 HD23 sing N N 237 LEU OXT HXT sing N N 238 LYS N CA sing N N 239 LYS N H sing N N 240 LYS N H2 sing N N 241 LYS CA C sing N N 242 LYS CA CB sing N N 243 LYS CA HA sing N N 244 LYS C O doub N N 245 LYS C OXT sing N N 246 LYS CB CG sing N N 247 LYS CB HB2 sing N N 248 LYS CB HB3 sing N N 249 LYS CG CD sing N N 250 LYS CG HG2 sing N N 251 LYS CG HG3 sing N N 252 LYS CD CE sing N N 253 LYS CD HD2 sing N N 254 LYS CD HD3 sing N N 255 LYS CE NZ sing N N 256 LYS CE HE2 sing N N 257 LYS CE HE3 sing N N 258 LYS NZ HZ1 sing N N 259 LYS NZ HZ2 sing N N 260 LYS NZ HZ3 sing N N 261 LYS OXT HXT sing N N 262 MAN C1 C2 sing N N 263 MAN C1 O1 sing N N 264 MAN C1 O5 sing N N 265 MAN C1 H1 sing N N 266 MAN C2 C3 sing N N 267 MAN C2 O2 sing N N 268 MAN C2 H2 sing N N 269 MAN C3 C4 sing N N 270 MAN C3 O3 sing N N 271 MAN C3 H3 sing N N 272 MAN C4 C5 sing N N 273 MAN C4 O4 sing N N 274 MAN C4 H4 sing N N 275 MAN C5 C6 sing N N 276 MAN C5 O5 sing N N 277 MAN C5 H5 sing N N 278 MAN C6 O6 sing N N 279 MAN C6 H61 sing N N 280 MAN C6 H62 sing N N 281 MAN O1 HO1 sing N N 282 MAN O2 HO2 sing N N 283 MAN O3 HO3 sing N N 284 MAN O4 HO4 sing N N 285 MAN O6 HO6 sing N N 286 MET N CA sing N N 287 MET N H sing N N 288 MET N H2 sing N N 289 MET CA C sing N N 290 MET CA CB sing N N 291 MET CA HA sing N N 292 MET C O doub N N 293 MET C OXT sing N N 294 MET CB CG sing N N 295 MET CB HB2 sing N N 296 MET CB HB3 sing N N 297 MET CG SD sing N N 298 MET CG HG2 sing N N 299 MET CG HG3 sing N N 300 MET SD CE sing N N 301 MET CE HE1 sing N N 302 MET CE HE2 sing N N 303 MET CE HE3 sing N N 304 MET OXT HXT sing N N 305 NAG C1 C2 sing N N 306 NAG C1 O1 sing N N 307 NAG C1 O5 sing N N 308 NAG C1 H1 sing N N 309 NAG C2 C3 sing N N 310 NAG C2 N2 sing N N 311 NAG C2 H2 sing N N 312 NAG C3 C4 sing N N 313 NAG C3 O3 sing N N 314 NAG C3 H3 sing N N 315 NAG C4 C5 sing N N 316 NAG C4 O4 sing N N 317 NAG C4 H4 sing N N 318 NAG C5 C6 sing N N 319 NAG C5 O5 sing N N 320 NAG C5 H5 sing N N 321 NAG C6 O6 sing N N 322 NAG C6 H61 sing N N 323 NAG C6 H62 sing N N 324 NAG C7 C8 sing N N 325 NAG C7 N2 sing N N 326 NAG C7 O7 doub N N 327 NAG C8 H81 sing N N 328 NAG C8 H82 sing N N 329 NAG C8 H83 sing N N 330 NAG N2 HN2 sing N N 331 NAG O1 HO1 sing N N 332 NAG O3 HO3 sing N N 333 NAG O4 HO4 sing N N 334 NAG O6 HO6 sing N N 335 PHE N CA sing N N 336 PHE N H sing N N 337 PHE N H2 sing N N 338 PHE CA C sing N N 339 PHE CA CB sing N N 340 PHE CA HA sing N N 341 PHE C O doub N N 342 PHE C OXT sing N N 343 PHE CB CG sing N N 344 PHE CB HB2 sing N N 345 PHE CB HB3 sing N N 346 PHE CG CD1 doub Y N 347 PHE CG CD2 sing Y N 348 PHE CD1 CE1 sing Y N 349 PHE CD1 HD1 sing N N 350 PHE CD2 CE2 doub Y N 351 PHE CD2 HD2 sing N N 352 PHE CE1 CZ doub Y N 353 PHE CE1 HE1 sing N N 354 PHE CE2 CZ sing Y N 355 PHE CE2 HE2 sing N N 356 PHE CZ HZ sing N N 357 PHE OXT HXT sing N N 358 PRO N CA sing N N 359 PRO N CD sing N N 360 PRO N H sing N N 361 PRO CA C sing N N 362 PRO CA CB sing N N 363 PRO CA HA sing N N 364 PRO C O doub N N 365 PRO C OXT sing N N 366 PRO CB CG sing N N 367 PRO CB HB2 sing N N 368 PRO CB HB3 sing N N 369 PRO CG CD sing N N 370 PRO CG HG2 sing N N 371 PRO CG HG3 sing N N 372 PRO CD HD2 sing N N 373 PRO CD HD3 sing N N 374 PRO OXT HXT sing N N 375 SER N CA sing N N 376 SER N H sing N N 377 SER N H2 sing N N 378 SER CA C sing N N 379 SER CA CB sing N N 380 SER CA HA sing N N 381 SER C O doub N N 382 SER C OXT sing N N 383 SER CB OG sing N N 384 SER CB HB2 sing N N 385 SER CB HB3 sing N N 386 SER OG HG sing N N 387 SER OXT HXT sing N N 388 THR N CA sing N N 389 THR N H sing N N 390 THR N H2 sing N N 391 THR CA C sing N N 392 THR CA CB sing N N 393 THR CA HA sing N N 394 THR C O doub N N 395 THR C OXT sing N N 396 THR CB OG1 sing N N 397 THR CB CG2 sing N N 398 THR CB HB sing N N 399 THR OG1 HG1 sing N N 400 THR CG2 HG21 sing N N 401 THR CG2 HG22 sing N N 402 THR CG2 HG23 sing N N 403 THR OXT HXT sing N N 404 TRP N CA sing N N 405 TRP N H sing N N 406 TRP N H2 sing N N 407 TRP CA C sing N N 408 TRP CA CB sing N N 409 TRP CA HA sing N N 410 TRP C O doub N N 411 TRP C OXT sing N N 412 TRP CB CG sing N N 413 TRP CB HB2 sing N N 414 TRP CB HB3 sing N N 415 TRP CG CD1 doub Y N 416 TRP CG CD2 sing Y N 417 TRP CD1 NE1 sing Y N 418 TRP CD1 HD1 sing N N 419 TRP CD2 CE2 doub Y N 420 TRP CD2 CE3 sing Y N 421 TRP NE1 CE2 sing Y N 422 TRP NE1 HE1 sing N N 423 TRP CE2 CZ2 sing Y N 424 TRP CE3 CZ3 doub Y N 425 TRP CE3 HE3 sing N N 426 TRP CZ2 CH2 doub Y N 427 TRP CZ2 HZ2 sing N N 428 TRP CZ3 CH2 sing Y N 429 TRP CZ3 HZ3 sing N N 430 TRP CH2 HH2 sing N N 431 TRP OXT HXT sing N N 432 TYR N CA sing N N 433 TYR N H sing N N 434 TYR N H2 sing N N 435 TYR CA C sing N N 436 TYR CA CB sing N N 437 TYR CA HA sing N N 438 TYR C O doub N N 439 TYR C OXT sing N N 440 TYR CB CG sing N N 441 TYR CB HB2 sing N N 442 TYR CB HB3 sing N N 443 TYR CG CD1 doub Y N 444 TYR CG CD2 sing Y N 445 TYR CD1 CE1 sing Y N 446 TYR CD1 HD1 sing N N 447 TYR CD2 CE2 doub Y N 448 TYR CD2 HD2 sing N N 449 TYR CE1 CZ doub Y N 450 TYR CE1 HE1 sing N N 451 TYR CE2 CZ sing Y N 452 TYR CE2 HE2 sing N N 453 TYR CZ OH sing N N 454 TYR OH HH sing N N 455 TYR OXT HXT sing N N 456 VAL N CA sing N N 457 VAL N H sing N N 458 VAL N H2 sing N N 459 VAL CA C sing N N 460 VAL CA CB sing N N 461 VAL CA HA sing N N 462 VAL C O doub N N 463 VAL C OXT sing N N 464 VAL CB CG1 sing N N 465 VAL CB CG2 sing N N 466 VAL CB HB sing N N 467 VAL CG1 HG11 sing N N 468 VAL CG1 HG12 sing N N 469 VAL CG1 HG13 sing N N 470 VAL CG2 HG21 sing N N 471 VAL CG2 HG22 sing N N 472 VAL CG2 HG23 sing N N 473 VAL OXT HXT sing N N 474 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 A NAG 401 n B 2 NAG 2 B NAG 2 A NAG 402 n B 2 BMA 3 B BMA 3 A BMA 403 n B 2 MAN 4 B MAN 4 A MAN 404 n B 2 MAN 5 B MAN 5 A MAN 405 n C 3 NAG 1 C NAG 1 A NAG 406 n C 3 NAG 2 C NAG 2 A NAG 407 n C 3 BMA 3 C BMA 3 A BMA 408 n D 4 NAG 1 D NAG 1 A NAG 409 n D 4 NAG 2 D NAG 2 A NAG 410 n D 4 BMA 3 D BMA 3 A BMA 412 n D 4 MAN 4 D MAN 4 A MAN 413 n D 4 MAN 5 D MAN 5 A MAN 414 n D 4 FUC 6 D FUC 6 A FUC 411 n E 2 NAG 1 E NAG 1 A NAG 415 n E 2 NAG 2 E NAG 2 A NAG 416 n E 2 BMA 3 E BMA 3 A BMA 417 n E 2 MAN 4 E MAN 4 A MAN 418 n E 2 MAN 5 E MAN 5 A MAN 419 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man FUC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpa FUC 'COMMON NAME' GMML 1.0 a-L-fucopyranose FUC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Fucp FUC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'DManpa1-3[DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-' 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/3,5,4/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3-3/a4-b1_b4-c1_c3-d1_c6-e1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{}}}}}' LINUCS PDB-CARE ? 4 3 DManpb1-4DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 5 3 'WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-1-2/a4-b1_b4-c1' WURCS PDB2Glycan 1.1.0 6 3 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}}}' LINUCS PDB-CARE ? 7 4 'DManpa1-3[DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-' 'Glycam Condensed Sequence' GMML 1.0 8 4 'WURCS=2.0/4,6,5/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5]/1-1-2-3-3-4/a4-b1_a6-f1_b4-c1_c3-d1_c6-e1' WURCS PDB2Glycan 1.1.0 9 4 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{}}}[(6+1)][a-L-Fucp]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 2 3 BMA C1 O1 2 NAG O4 HO4 sing ? 3 2 4 MAN C1 O1 3 BMA O3 HO3 sing ? 4 2 5 MAN C1 O1 3 BMA O6 HO6 sing ? 5 3 2 NAG C1 O1 1 NAG O4 HO4 sing ? 6 3 3 BMA C1 O1 2 NAG O4 HO4 sing ? 7 4 2 NAG C1 O1 1 NAG O4 HO4 sing ? 8 4 3 BMA C1 O1 2 NAG O4 HO4 sing ? 9 4 4 MAN C1 O1 3 BMA O3 HO3 sing ? 10 4 5 MAN C1 O1 3 BMA O6 HO6 sing ? 11 4 6 FUC C1 O1 1 NAG O6 HO6 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n 2 BMA 3 n 2 MAN 4 n 2 MAN 5 n 3 NAG 1 n 3 NAG 2 n 3 BMA 3 n 4 NAG 1 n 4 NAG 2 n 4 BMA 3 n 4 MAN 4 n 4 MAN 5 n 4 FUC 6 n # _pdbx_entity_nonpoly.entity_id 5 _pdbx_entity_nonpoly.name 2-acetamido-2-deoxy-beta-D-glucopyranose _pdbx_entity_nonpoly.comp_id NAG # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3ALP _pdbx_initial_refinement_model.details 'PDB ENTRY 3ALP' #