HEADER TRANSFERASE 21-JUN-12 4FP4 TITLE CRYSTAL STRUCTURE OF ISOPRENOID SYNTHASE A3MX09 (TARGET EFI-501993) TITLE 2 FROM PYROBACULUM CALIDIFONTIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYPRENYL SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROBACULUM CALIDIFONTIS; SOURCE 3 ORGANISM_TAXID: 410359; SOURCE 4 STRAIN: JCM 11548 / VA1; SOURCE 5 GENE: PCAL_1759; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIL KEYWDS ISOPRENOID SYNTHESIS, ISOPRENOID DIPHOSPHATE SYNTHASE, TRANSFERASE, KEYWDS 2 STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,R.TORO,R.BHOSLE,B.HILLERICH,R.D.SEIDEL,E.WASHINGTON, AUTHOR 2 A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS,W.D.ZENCHECK,H.J.IMKER, AUTHOR 3 C.D.POULTER,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) REVDAT 4 13-SEP-23 4FP4 1 REMARK SEQADV REVDAT 3 10-APR-13 4FP4 1 JRNL REVDAT 2 03-APR-13 4FP4 1 JRNL REVDAT 1 11-JUL-12 4FP4 0 JRNL AUTH F.H.WALLRAPP,J.J.PAN,G.RAMAMOORTHY,D.E.ALMONACID, JRNL AUTH 2 B.S.HILLERICH,R.SEIDEL,Y.PATSKOVSKY,P.C.BABBITT,S.C.ALMO, JRNL AUTH 3 M.P.JACOBSON,C.D.POULTER JRNL TITL PREDICTION OF FUNCTION FOR THE POLYPRENYL TRANSFERASE JRNL TITL 2 SUBGROUP IN THE ISOPRENOID SYNTHASE SUPERFAMILY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 E1196 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23493556 JRNL DOI 10.1073/PNAS.1300632110 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0025 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 34268 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1115 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2470 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.3190 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3740 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 99 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.39000 REMARK 3 B22 (A**2) : 3.09000 REMARK 3 B33 (A**2) : -5.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.41000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.172 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.157 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.131 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.869 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3862 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5212 ; 1.342 ; 2.022 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 477 ; 2.571 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 153 ;24.420 ;23.007 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 730 ;11.062 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;10.250 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 615 ; 0.053 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2791 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4FP4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000073178. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35655 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.62000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3LMD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 10% PEG6000, PH 7.5, 5% REMARK 280 MPD, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 57.71000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 VAL A 0 REMARK 465 ASP A 202 REMARK 465 ASP A 203 REMARK 465 TYR A 204 REMARK 465 SER A 205 REMARK 465 ASP A 206 REMARK 465 GLU A 207 REMARK 465 ASN A 208 REMARK 465 VAL A 209 REMARK 465 GLU A 210 REMARK 465 GLY A 253 REMARK 465 THR A 254 REMARK 465 LEU A 255 REMARK 465 THR A 256 REMARK 465 VAL A 257 REMARK 465 SER A 258 REMARK 465 ARG A 259 REMARK 465 THR A 260 REMARK 465 ILE A 261 REMARK 465 ALA A 262 REMARK 465 GLU A 263 REMARK 465 ASN A 264 REMARK 465 LEU A 265 REMARK 465 TYR A 266 REMARK 465 PHE A 267 REMARK 465 GLN A 268 REMARK 465 SER A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 465 HIS A 273 REMARK 465 HIS A 274 REMARK 465 HIS A 275 REMARK 465 TRP A 276 REMARK 465 SER A 277 REMARK 465 HIS A 278 REMARK 465 PRO A 279 REMARK 465 GLN A 280 REMARK 465 PHE A 281 REMARK 465 GLU A 282 REMARK 465 LYS A 283 REMARK 465 MET B -1 REMARK 465 VAL B 0 REMARK 465 MET B 1 REMARK 465 TYR B 2 REMARK 465 SER B 3 REMARK 465 SER B 201 REMARK 465 ASP B 202 REMARK 465 ASP B 203 REMARK 465 TYR B 204 REMARK 465 SER B 205 REMARK 465 ASP B 206 REMARK 465 GLU B 207 REMARK 465 ASN B 208 REMARK 465 VAL B 209 REMARK 465 GLU B 210 REMARK 465 ARG B 211 REMARK 465 PRO B 212 REMARK 465 GLU B 213 REMARK 465 LEU B 251 REMARK 465 GLU B 252 REMARK 465 GLY B 253 REMARK 465 THR B 254 REMARK 465 LEU B 255 REMARK 465 THR B 256 REMARK 465 VAL B 257 REMARK 465 SER B 258 REMARK 465 ARG B 259 REMARK 465 THR B 260 REMARK 465 ILE B 261 REMARK 465 ALA B 262 REMARK 465 GLU B 263 REMARK 465 ASN B 264 REMARK 465 LEU B 265 REMARK 465 TYR B 266 REMARK 465 PHE B 267 REMARK 465 GLN B 268 REMARK 465 SER B 269 REMARK 465 HIS B 270 REMARK 465 HIS B 271 REMARK 465 HIS B 272 REMARK 465 HIS B 273 REMARK 465 HIS B 274 REMARK 465 HIS B 275 REMARK 465 TRP B 276 REMARK 465 SER B 277 REMARK 465 HIS B 278 REMARK 465 PRO B 279 REMARK 465 GLN B 280 REMARK 465 PHE B 281 REMARK 465 GLU B 282 REMARK 465 LYS B 283 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 211 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 86 UNK UNX B 301 1.98 REMARK 500 OD2 ASP B 90 UNK UNX B 301 2.16 REMARK 500 NE2 HIS A 92 UNK UNX A 302 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 212 C - N - CD ANGL. DEV. = -13.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 3 48.24 -104.09 REMARK 500 ASP A 150 -71.93 -57.19 REMARK 500 ARG A 180 66.20 -117.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GER A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-501993 RELATED DB: TARGETTRACK DBREF 4FP4 A 1 261 UNP A3MX09 A3MX09_PYRCJ 1 261 DBREF 4FP4 B 1 261 UNP A3MX09 A3MX09_PYRCJ 1 261 SEQADV 4FP4 MET A -1 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 VAL A 0 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 ALA A 262 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 GLU A 263 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 ASN A 264 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 LEU A 265 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 TYR A 266 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 PHE A 267 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 GLN A 268 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 SER A 269 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 HIS A 270 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 HIS A 271 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 HIS A 272 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 HIS A 273 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 HIS A 274 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 HIS A 275 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 TRP A 276 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 SER A 277 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 HIS A 278 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 PRO A 279 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 GLN A 280 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 PHE A 281 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 GLU A 282 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 LYS A 283 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 MET B -1 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 VAL B 0 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 ALA B 262 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 GLU B 263 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 ASN B 264 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 LEU B 265 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 TYR B 266 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 PHE B 267 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 GLN B 268 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 SER B 269 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 HIS B 270 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 HIS B 271 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 HIS B 272 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 HIS B 273 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 HIS B 274 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 HIS B 275 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 TRP B 276 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 SER B 277 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 HIS B 278 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 PRO B 279 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 GLN B 280 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 PHE B 281 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 GLU B 282 UNP A3MX09 EXPRESSION TAG SEQADV 4FP4 LYS B 283 UNP A3MX09 EXPRESSION TAG SEQRES 1 A 285 MET VAL MET TYR SER LEU PRO PRO GLU VAL LEU ALA ALA SEQRES 2 A 285 LEU GLU ARG VAL LYS ALA ARG LEU ASN LYS VAL GLY GLU SEQRES 3 A 285 GLU LEU GLU PRO ILE SER LEU ARG LYS ALA VAL ARG HIS SEQRES 4 A 285 TYR ILE GLU THR PRO GLY LYS LEU LEU ARG PRO LEU LEU SEQRES 5 A 285 LEU LEU THR PHE THR TYR SER ILE ASP ARG ARG SER ILE SEQRES 6 A 285 MET ASP PRO ARG ILE LEU GLU ALA ALA ALA ILE VAL GLU SEQRES 7 A 285 LEU LEU HIS VAL VAL SER LEU LEU GLN ASP ASP VAL MET SEQRES 8 A 285 ASP GLN HIS ASP GLN ARG ARG GLY ILE LYS THR PRO ARG SEQRES 9 A 285 ALA MET TYR GLY ASP GLY ARG ALA ILE VAL ALA SER ASP SEQRES 10 A 285 TRP LEU ILE ALA GLU SER ILE LYS MET ALA VAL ASN LEU SEQRES 11 A 285 GLY ALA ASP VAL VAL THR TYR LEU ALA ASP VAL ALA GLN SEQRES 12 A 285 ARG LEU SER VAL GLY GLN ALA LEU ASP LEU GLU GLY GLU SEQRES 13 A 285 ARG ASP LYS ALA ALA GLU PHE LYS THR ALA PRO LEU ILE SEQRES 14 A 285 GLU ALA ALA LEU VAL MET PRO LEU VAL ILE LEU GLY ARG SEQRES 15 A 285 ARG GLU LEU ILE GLU THR ALA LYS LYS LEU GLY THR LYS SEQRES 16 A 285 LEU GLY ILE LEU TYR GLN TYR SER ASP ASP TYR SER ASP SEQRES 17 A 285 GLU ASN VAL GLU ARG PRO GLU THR LYS SER ILE ALA ASN SEQRES 18 A 285 GLU ILE GLY ARG TYR LEU LEU LYS ILE LYS GLU HIS VAL SEQRES 19 A 285 GLY ASP ALA ILE ALA PRO PHE GLU ARG LEU ILE LYS TYR SEQRES 20 A 285 LEU ILE GLY LYS ALA LEU GLU GLY THR LEU THR VAL SER SEQRES 21 A 285 ARG THR ILE ALA GLU ASN LEU TYR PHE GLN SER HIS HIS SEQRES 22 A 285 HIS HIS HIS HIS TRP SER HIS PRO GLN PHE GLU LYS SEQRES 1 B 285 MET VAL MET TYR SER LEU PRO PRO GLU VAL LEU ALA ALA SEQRES 2 B 285 LEU GLU ARG VAL LYS ALA ARG LEU ASN LYS VAL GLY GLU SEQRES 3 B 285 GLU LEU GLU PRO ILE SER LEU ARG LYS ALA VAL ARG HIS SEQRES 4 B 285 TYR ILE GLU THR PRO GLY LYS LEU LEU ARG PRO LEU LEU SEQRES 5 B 285 LEU LEU THR PHE THR TYR SER ILE ASP ARG ARG SER ILE SEQRES 6 B 285 MET ASP PRO ARG ILE LEU GLU ALA ALA ALA ILE VAL GLU SEQRES 7 B 285 LEU LEU HIS VAL VAL SER LEU LEU GLN ASP ASP VAL MET SEQRES 8 B 285 ASP GLN HIS ASP GLN ARG ARG GLY ILE LYS THR PRO ARG SEQRES 9 B 285 ALA MET TYR GLY ASP GLY ARG ALA ILE VAL ALA SER ASP SEQRES 10 B 285 TRP LEU ILE ALA GLU SER ILE LYS MET ALA VAL ASN LEU SEQRES 11 B 285 GLY ALA ASP VAL VAL THR TYR LEU ALA ASP VAL ALA GLN SEQRES 12 B 285 ARG LEU SER VAL GLY GLN ALA LEU ASP LEU GLU GLY GLU SEQRES 13 B 285 ARG ASP LYS ALA ALA GLU PHE LYS THR ALA PRO LEU ILE SEQRES 14 B 285 GLU ALA ALA LEU VAL MET PRO LEU VAL ILE LEU GLY ARG SEQRES 15 B 285 ARG GLU LEU ILE GLU THR ALA LYS LYS LEU GLY THR LYS SEQRES 16 B 285 LEU GLY ILE LEU TYR GLN TYR SER ASP ASP TYR SER ASP SEQRES 17 B 285 GLU ASN VAL GLU ARG PRO GLU THR LYS SER ILE ALA ASN SEQRES 18 B 285 GLU ILE GLY ARG TYR LEU LEU LYS ILE LYS GLU HIS VAL SEQRES 19 B 285 GLY ASP ALA ILE ALA PRO PHE GLU ARG LEU ILE LYS TYR SEQRES 20 B 285 LEU ILE GLY LYS ALA LEU GLU GLY THR LEU THR VAL SER SEQRES 21 B 285 ARG THR ILE ALA GLU ASN LEU TYR PHE GLN SER HIS HIS SEQRES 22 B 285 HIS HIS HIS HIS TRP SER HIS PRO GLN PHE GLU LYS HET GER A 301 20 HET UNX A 302 1 HET UNL A 303 13 HET UNX B 301 1 HETNAM GER GERAN-8-YL GERAN HETNAM UNX UNKNOWN ATOM OR ION HETNAM UNL UNKNOWN LIGAND FORMUL 3 GER C20 H34 FORMUL 4 UNX 2(X) FORMUL 7 HOH *99(H2 O) HELIX 1 1 PRO A 5 LYS A 21 1 17 HELIX 2 2 PRO A 28 THR A 41 1 14 HELIX 3 3 LEU A 45 ASP A 59 1 15 HELIX 4 4 ARG A 60 MET A 64 5 5 HELIX 5 5 ASP A 65 ASP A 90 1 26 HELIX 6 6 THR A 100 GLY A 106 1 7 HELIX 7 7 GLY A 106 ASN A 127 1 22 HELIX 8 8 GLY A 129 GLU A 152 1 24 HELIX 9 9 GLU A 154 THR A 163 1 10 HELIX 10 10 THR A 163 GLY A 179 1 17 HELIX 11 11 ARG A 180 GLU A 182 5 3 HELIX 12 12 LEU A 183 TYR A 198 1 16 HELIX 13 13 PRO A 212 GLY A 233 1 22 HELIX 14 14 ILE A 236 GLU A 252 1 17 HELIX 15 15 PRO B 5 ASN B 20 1 16 HELIX 16 16 PRO B 28 THR B 41 1 14 HELIX 17 17 LEU B 45 ASP B 59 1 15 HELIX 18 18 ARG B 60 MET B 64 5 5 HELIX 19 19 ASP B 65 ASP B 90 1 26 HELIX 20 20 THR B 100 GLY B 106 1 7 HELIX 21 21 GLY B 106 ASN B 127 1 22 HELIX 22 22 GLY B 129 GLU B 152 1 24 HELIX 23 23 GLU B 154 THR B 163 1 10 HELIX 24 24 THR B 163 GLY B 179 1 17 HELIX 25 25 ARG B 180 GLU B 182 5 3 HELIX 26 26 LEU B 183 TYR B 200 1 18 HELIX 27 27 SER B 216 GLY B 233 1 18 HELIX 28 28 ILE B 236 ALA B 250 1 15 SHEET 1 A 2 GLN B 94 ARG B 95 0 SHEET 2 A 2 ILE B 98 LYS B 99 -1 O ILE B 98 N ARG B 95 CISPEP 1 GLU A 27 PRO A 28 0 2.73 CISPEP 2 GLU B 27 PRO B 28 0 -1.24 SITE 1 AC1 12 LEU A 78 VAL A 81 SER A 82 GLN A 85 SITE 2 AC1 12 MET A 89 ILE A 118 ILE A 122 VAL A 133 SITE 3 AC1 12 LEU A 136 ALA A 140 ASP B 115 ILE B 122 CRYST1 46.957 115.420 53.139 90.00 110.84 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021296 0.000000 0.008107 0.00000 SCALE2 0.000000 0.008664 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020136 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.911410 -0.286045 -0.295822 56.34529 1 MTRIX2 2 -0.264292 -0.144111 0.953615 4.79887 1 MTRIX3 2 -0.315408 0.947317 0.055745 12.10518 1