HEADER OXIDOREDUCTASE 25-JUN-12 4FQ8 TITLE CRYSTAL STRUCTURE OF SHIKIMATE DEHYDROGENASE (AROE) Y210A MUTANT FROM TITLE 2 HELICOBACTER PYLORI IN COMPLEX WITH SHIKIMATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHIKIMATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.25; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 85962; SOURCE 4 STRAIN: 26695; SOURCE 5 GENE: AROE, HP_1249; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS DEHYDROGENASE, NADP BINDING, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR W.C.CHENG,T.J.CHEN,W.C.WANG REVDAT 3 13-SEP-23 4FQ8 1 REMARK SEQADV REVDAT 2 15-NOV-17 4FQ8 1 REMARK REVDAT 1 26-DEC-12 4FQ8 0 REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 30151 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1516 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.07 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.12 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1990 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE SET COUNT : 112 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4114 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.20000 REMARK 3 B22 (A**2) : 1.98000 REMARK 3 B33 (A**2) : -1.77000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.266 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.204 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.136 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.848 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4232 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5700 ; 1.450 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 524 ; 7.544 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 176 ;39.904 ;24.545 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 758 ;20.113 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;21.361 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 632 ; 0.118 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3140 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2614 ; 1.393 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4172 ; 2.403 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1618 ; 3.512 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1528 ; 5.425 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4FQ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000073218. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30207 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.060 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.38300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3PHG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM ACETATE, 0.1M TRIS, 29% REMARK 280 PEG 4000, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.12200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.16900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.16750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.16900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.12200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.16750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 264 REMARK 465 GLU A 265 REMARK 465 HIS A 266 REMARK 465 HIS A 267 REMARK 465 HIS A 268 REMARK 465 HIS A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 LEU B 264 REMARK 465 GLU B 265 REMARK 465 HIS B 266 REMARK 465 HIS B 267 REMARK 465 HIS B 268 REMARK 465 HIS B 269 REMARK 465 HIS B 270 REMARK 465 HIS B 271 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 110 OD1 ASP B 155 4446 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 135 CB CYS B 135 SG -0.116 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 11 94.43 -167.22 REMARK 500 ILE A 13 -19.78 -155.07 REMARK 500 PRO A 67 38.90 -97.90 REMARK 500 ASP A 97 15.58 58.92 REMARK 500 ASN A 117 59.98 -116.78 REMARK 500 ASN A 191 132.46 -37.64 REMARK 500 ARG B 34 -4.92 -53.90 REMARK 500 PRO B 67 40.10 -103.63 REMARK 500 ASP B 97 -0.55 73.26 REMARK 500 GLN B 115 -73.25 -150.79 REMARK 500 LYS B 116 -145.45 -151.57 REMARK 500 ASN B 117 60.80 -103.94 REMARK 500 ALA B 126 16.27 -141.87 REMARK 500 ARG B 152 -41.20 129.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG B 34 PHE B 35 -146.16 REMARK 500 GLN B 115 LYS B 116 144.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SKM A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SKM B 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3PHG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SHIKIMATE 5-DEHYDROGENASE (AROE) FROM REMARK 900 HELICOBACTER PYLORI REMARK 900 RELATED ID: 3PHH RELATED DB: PDB REMARK 900 SHIKIMATE 5-DEHYDROGENASE (AROE) FROM HELICOBACTER PYLORI IN REMARK 900 COMPLEX WITH SHIKIMATE REMARK 900 RELATED ID: 3PHI RELATED DB: PDB REMARK 900 SHIKIMATE 5-DEHYDROGENASE (AROE) FROM HELICOBACTER PYLORI IN REMARK 900 COMPLEX WITH SHIKIMATE AND NADPH REMARK 900 RELATED ID: 3PHJ RELATED DB: PDB REMARK 900 SHIKIMATE 5-DEHYDROGENASE (AROE) FROM HELICOBACTER PYLORI IN REMARK 900 COMPLEX WITH 3-DEHYDROSHIKIMATE REMARK 900 RELATED ID: 4FOO RELATED DB: PDB REMARK 900 RELATED ID: 4FOS RELATED DB: PDB REMARK 900 RELATED ID: 4FPX RELATED DB: PDB REMARK 900 RELATED ID: 4FR5 RELATED DB: PDB DBREF 4FQ8 A 1 263 UNP P56119 AROE_HELPY 1 263 DBREF 4FQ8 B 1 263 UNP P56119 AROE_HELPY 1 263 SEQADV 4FQ8 ALA A 210 UNP P56119 TYR 210 ENGINEERED MUTATION SEQADV 4FQ8 LEU A 264 UNP P56119 EXPRESSION TAG SEQADV 4FQ8 GLU A 265 UNP P56119 EXPRESSION TAG SEQADV 4FQ8 HIS A 266 UNP P56119 EXPRESSION TAG SEQADV 4FQ8 HIS A 267 UNP P56119 EXPRESSION TAG SEQADV 4FQ8 HIS A 268 UNP P56119 EXPRESSION TAG SEQADV 4FQ8 HIS A 269 UNP P56119 EXPRESSION TAG SEQADV 4FQ8 HIS A 270 UNP P56119 EXPRESSION TAG SEQADV 4FQ8 HIS A 271 UNP P56119 EXPRESSION TAG SEQADV 4FQ8 ALA B 210 UNP P56119 TYR 210 ENGINEERED MUTATION SEQADV 4FQ8 LEU B 264 UNP P56119 EXPRESSION TAG SEQADV 4FQ8 GLU B 265 UNP P56119 EXPRESSION TAG SEQADV 4FQ8 HIS B 266 UNP P56119 EXPRESSION TAG SEQADV 4FQ8 HIS B 267 UNP P56119 EXPRESSION TAG SEQADV 4FQ8 HIS B 268 UNP P56119 EXPRESSION TAG SEQADV 4FQ8 HIS B 269 UNP P56119 EXPRESSION TAG SEQADV 4FQ8 HIS B 270 UNP P56119 EXPRESSION TAG SEQADV 4FQ8 HIS B 271 UNP P56119 EXPRESSION TAG SEQRES 1 A 271 MET LYS LEU LYS SER PHE GLY VAL PHE GLY ASN PRO ILE SEQRES 2 A 271 LYS HIS SER LYS SER PRO LEU ILE HIS ASN ALA CYS PHE SEQRES 3 A 271 LEU THR PHE GLN LYS GLU LEU ARG PHE LEU GLY HIS TYR SEQRES 4 A 271 HIS PRO ILE LEU LEU PRO LEU GLU SER HIS ILE LYS SER SEQRES 5 A 271 GLU PHE LEU HIS LEU GLY LEU SER GLY ALA ASN VAL THR SEQRES 6 A 271 LEU PRO PHE LYS GLU ARG ALA PHE GLN VAL CYS ASP LYS SEQRES 7 A 271 ILE LYS GLY ILE ALA LEU GLU CYS GLY ALA VAL ASN THR SEQRES 8 A 271 LEU VAL LEU GLU ASN ASP GLU LEU VAL GLY TYR ASN THR SEQRES 9 A 271 ASP ALA LEU GLY PHE TYR LEU SER LEU LYS GLN LYS ASN SEQRES 10 A 271 TYR GLN ASN ALA LEU ILE LEU GLY ALA GLY GLY SER ALA SEQRES 11 A 271 LYS ALA LEU ALA CYS GLU LEU LYS LYS GLN GLY LEU GLN SEQRES 12 A 271 VAL SER VAL LEU ASN ARG SER SER ARG GLY LEU ASP PHE SEQRES 13 A 271 PHE GLN ARG LEU GLY CYS ASP CYS PHE MET GLU PRO PRO SEQRES 14 A 271 LYS SER ALA PHE ASP LEU ILE ILE ASN ALA THR SER ALA SEQRES 15 A 271 SER LEU HIS ASN GLU LEU PRO LEU ASN LYS GLU VAL LEU SEQRES 16 A 271 LYS GLY TYR PHE LYS GLU GLY LYS LEU ALA TYR ASP LEU SEQRES 17 A 271 ALA ALA GLY PHE LEU THR PRO PHE LEU SER LEU ALA LYS SEQRES 18 A 271 GLU LEU LYS THR PRO PHE GLN ASP GLY LYS ASP MET LEU SEQRES 19 A 271 ILE TYR GLN ALA ALA LEU SER PHE GLU LYS PHE SER ALA SEQRES 20 A 271 SER GLN ILE PRO TYR SER LYS ALA PHE GLU VAL MET ARG SEQRES 21 A 271 SER VAL PHE LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 271 MET LYS LEU LYS SER PHE GLY VAL PHE GLY ASN PRO ILE SEQRES 2 B 271 LYS HIS SER LYS SER PRO LEU ILE HIS ASN ALA CYS PHE SEQRES 3 B 271 LEU THR PHE GLN LYS GLU LEU ARG PHE LEU GLY HIS TYR SEQRES 4 B 271 HIS PRO ILE LEU LEU PRO LEU GLU SER HIS ILE LYS SER SEQRES 5 B 271 GLU PHE LEU HIS LEU GLY LEU SER GLY ALA ASN VAL THR SEQRES 6 B 271 LEU PRO PHE LYS GLU ARG ALA PHE GLN VAL CYS ASP LYS SEQRES 7 B 271 ILE LYS GLY ILE ALA LEU GLU CYS GLY ALA VAL ASN THR SEQRES 8 B 271 LEU VAL LEU GLU ASN ASP GLU LEU VAL GLY TYR ASN THR SEQRES 9 B 271 ASP ALA LEU GLY PHE TYR LEU SER LEU LYS GLN LYS ASN SEQRES 10 B 271 TYR GLN ASN ALA LEU ILE LEU GLY ALA GLY GLY SER ALA SEQRES 11 B 271 LYS ALA LEU ALA CYS GLU LEU LYS LYS GLN GLY LEU GLN SEQRES 12 B 271 VAL SER VAL LEU ASN ARG SER SER ARG GLY LEU ASP PHE SEQRES 13 B 271 PHE GLN ARG LEU GLY CYS ASP CYS PHE MET GLU PRO PRO SEQRES 14 B 271 LYS SER ALA PHE ASP LEU ILE ILE ASN ALA THR SER ALA SEQRES 15 B 271 SER LEU HIS ASN GLU LEU PRO LEU ASN LYS GLU VAL LEU SEQRES 16 B 271 LYS GLY TYR PHE LYS GLU GLY LYS LEU ALA TYR ASP LEU SEQRES 17 B 271 ALA ALA GLY PHE LEU THR PRO PHE LEU SER LEU ALA LYS SEQRES 18 B 271 GLU LEU LYS THR PRO PHE GLN ASP GLY LYS ASP MET LEU SEQRES 19 B 271 ILE TYR GLN ALA ALA LEU SER PHE GLU LYS PHE SER ALA SEQRES 20 B 271 SER GLN ILE PRO TYR SER LYS ALA PHE GLU VAL MET ARG SEQRES 21 B 271 SER VAL PHE LEU GLU HIS HIS HIS HIS HIS HIS HET SKM A 500 12 HET SKM B 500 12 HETNAM SKM (3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC HETNAM 2 SKM ACID HETSYN SKM SHIKIMATE FORMUL 3 SKM 2(C7 H10 O5) FORMUL 5 HOH *100(H2 O) HELIX 1 1 LYS A 17 ARG A 34 1 18 HELIX 2 2 HIS A 49 GLY A 58 1 10 HELIX 3 3 PHE A 68 CYS A 76 1 9 HELIX 4 4 ILE A 82 GLY A 87 1 6 HELIX 5 5 THR A 104 LEU A 113 1 10 HELIX 6 6 GLY A 127 GLN A 140 1 14 HELIX 7 7 GLY A 153 LEU A 160 1 8 HELIX 8 8 ALA A 182 ASN A 186 5 5 HELIX 9 9 ASN A 191 GLY A 202 1 12 HELIX 10 10 THR A 214 LEU A 223 1 10 HELIX 11 11 GLY A 230 SER A 246 1 17 HELIX 12 12 PRO A 251 PHE A 263 1 13 HELIX 13 13 LYS B 17 GLN B 30 1 14 HELIX 14 14 HIS B 49 LEU B 57 1 9 HELIX 15 15 PHE B 68 CYS B 76 1 9 HELIX 16 16 ILE B 82 GLY B 87 1 6 HELIX 17 17 THR B 104 LEU B 113 1 10 HELIX 18 18 GLY B 127 GLN B 140 1 14 HELIX 19 19 LEU B 154 GLY B 161 1 8 HELIX 20 20 SER B 181 ASN B 186 5 6 HELIX 21 21 ASN B 191 GLY B 202 1 12 HELIX 22 22 THR B 214 LEU B 223 1 10 HELIX 23 23 GLY B 230 SER B 246 1 17 HELIX 24 24 PRO B 251 PHE B 263 1 13 SHEET 1 A 6 LEU A 36 LEU A 43 0 SHEET 2 A 6 LEU A 3 GLY A 10 1 N VAL A 8 O ILE A 42 SHEET 3 A 6 GLY A 61 VAL A 64 1 O ASN A 63 N GLY A 7 SHEET 4 A 6 THR A 91 GLU A 95 -1 O LEU A 92 N ALA A 62 SHEET 5 A 6 GLU A 98 TYR A 102 -1 O VAL A 100 N VAL A 93 SHEET 6 A 6 LYS A 78 ILE A 79 1 N LYS A 78 O GLY A 101 SHEET 1 B 6 ASP A 163 PHE A 165 0 SHEET 2 B 6 GLN A 143 LEU A 147 1 N VAL A 144 O ASP A 163 SHEET 3 B 6 ASN A 120 LEU A 124 1 N ALA A 121 O SER A 145 SHEET 4 B 6 LEU A 175 ASN A 178 1 O ILE A 177 N LEU A 122 SHEET 5 B 6 LEU A 204 ASP A 207 1 O TYR A 206 N ILE A 176 SHEET 6 B 6 PHE A 227 GLN A 228 1 O GLN A 228 N ASP A 207 SHEET 1 C 6 LEU B 36 LEU B 43 0 SHEET 2 C 6 LEU B 3 GLY B 10 1 N VAL B 8 O ILE B 42 SHEET 3 C 6 GLY B 61 VAL B 64 1 O ASN B 63 N PHE B 9 SHEET 4 C 6 THR B 91 GLU B 95 -1 O LEU B 92 N ALA B 62 SHEET 5 C 6 GLU B 98 TYR B 102 -1 O VAL B 100 N VAL B 93 SHEET 6 C 6 LYS B 78 ILE B 79 1 N LYS B 78 O GLY B 101 SHEET 1 D 6 ASP B 163 PHE B 165 0 SHEET 2 D 6 GLN B 143 LEU B 147 1 N VAL B 146 O PHE B 165 SHEET 3 D 6 ASN B 120 LEU B 124 1 N ALA B 121 O SER B 145 SHEET 4 D 6 LEU B 175 ASN B 178 1 O ILE B 177 N LEU B 124 SHEET 5 D 6 LEU B 204 ASP B 207 1 O TYR B 206 N ILE B 176 SHEET 6 D 6 PHE B 227 GLN B 228 1 O GLN B 228 N ASP B 207 CISPEP 1 ASN A 11 PRO A 12 0 8.52 CISPEP 2 LEU A 66 PRO A 67 0 -6.19 CISPEP 3 ASN B 11 PRO B 12 0 4.25 CISPEP 4 LEU B 66 PRO B 67 0 4.66 CISPEP 5 LYS B 114 GLN B 115 0 -6.69 CISPEP 6 LYS B 116 ASN B 117 0 12.99 CISPEP 7 SER B 151 ARG B 152 0 13.25 SITE 1 AC1 9 SER A 16 SER A 18 ASN A 63 VAL A 64 SITE 2 AC1 9 THR A 65 LYS A 69 ASN A 90 ASP A 105 SITE 3 AC1 9 GLN A 237 SITE 1 AC2 11 SER B 16 SER B 18 ASN B 63 THR B 65 SITE 2 AC2 11 LYS B 69 ASN B 90 ASP B 105 GLN B 237 SITE 3 AC2 11 HOH B 612 HOH B 624 HOH B 637 CRYST1 46.244 88.335 118.338 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021624 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011321 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008450 0.00000