HEADER LIGASE 28-JUN-12 4FUT TITLE CRYSTAL STRUCTURE OF ATP BOUND MATB FROM RHODOPSEUDOMONAS PALUSTRIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALONYL COA SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MATB; COMPND 5 EC: 6.2.1.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOPSEUDOMONAS PALUSTRIS; SOURCE 3 ORGANISM_TAXID: 258594; SOURCE 4 STRAIN: CGA009; SOURCE 5 GENE: MATB, RPA0221; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JE9314; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTEV5 KEYWDS ANL SUPERFAMILY, METHYMALONYL-COA SYNTHETASE, COA, METHYLMALONATE, KEYWDS 2 MALONATE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR K.C.RANK,H.A.CROSBY,J.C.ESCALANTE-SEMERENA,I.RAYMENT REVDAT 3 03-APR-24 4FUT 1 REMARK SEQADV LINK REVDAT 2 12-SEP-12 4FUT 1 JRNL REVDAT 1 25-JUL-12 4FUT 0 JRNL AUTH H.A.CROSBY,K.C.RANK,I.RAYMENT,J.C.ESCALANTE-SEMERENA JRNL TITL STRUCTURE-GUIDED EXPANSION OF THE SUBSTRATE RANGE OF JRNL TITL 2 METHYLMALONYL COENZYME A SYNTHETASE (MATB) OF JRNL TITL 3 RHODOPSEUDOMONAS PALUSTRIS. JRNL REF APPL.ENVIRON.MICROBIOL. V. 78 6619 2012 JRNL REFN ISSN 0099-2240 JRNL PMID 22773649 JRNL DOI 10.1128/AEM.01733-12 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6_289) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.160 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 53454 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2718 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.9925 - 4.3019 0.99 5425 269 0.1566 0.1776 REMARK 3 2 4.3019 - 3.4173 0.99 5241 306 0.1427 0.1824 REMARK 3 3 3.4173 - 2.9861 0.98 5212 271 0.1636 0.1905 REMARK 3 4 2.9861 - 2.7135 0.97 5125 270 0.1625 0.2136 REMARK 3 5 2.7135 - 2.5192 0.96 5048 282 0.1541 0.1822 REMARK 3 6 2.5192 - 2.3708 0.95 5023 256 0.1501 0.1907 REMARK 3 7 2.3708 - 2.2521 0.95 5015 255 0.1546 0.2158 REMARK 3 8 2.2521 - 2.1541 0.94 4913 294 0.1488 0.2039 REMARK 3 9 2.1541 - 2.0713 0.94 4971 238 0.1510 0.2068 REMARK 3 10 2.0713 - 1.9998 0.92 4763 277 0.1665 0.2361 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 57.06 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.98560 REMARK 3 B22 (A**2) : -0.98560 REMARK 3 B33 (A**2) : 1.97130 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4076 REMARK 3 ANGLE : 1.052 5553 REMARK 3 CHIRALITY : 0.066 623 REMARK 3 PLANARITY : 0.004 704 REMARK 3 DIHEDRAL : 16.325 1500 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 1:399 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.5047 -39.9513 -2.7242 REMARK 3 T TENSOR REMARK 3 T11: 0.2031 T22: 0.1587 REMARK 3 T33: 0.1402 T12: 0.0907 REMARK 3 T13: -0.0613 T23: -0.0424 REMARK 3 L TENSOR REMARK 3 L11: 0.7229 L22: 0.7053 REMARK 3 L33: 0.4618 L12: 0.2360 REMARK 3 L13: 0.0575 L23: -0.1142 REMARK 3 S TENSOR REMARK 3 S11: 0.0211 S12: -0.0517 S13: -0.0167 REMARK 3 S21: -0.0662 S22: -0.0050 S23: -0.0281 REMARK 3 S31: 0.1298 S32: 0.1099 S33: -0.0147 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 400:503 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.0596 -70.7467 0.8779 REMARK 3 T TENSOR REMARK 3 T11: 0.5321 T22: 0.2125 REMARK 3 T33: 0.1996 T12: 0.2407 REMARK 3 T13: 0.0044 T23: -0.0295 REMARK 3 L TENSOR REMARK 3 L11: 0.5264 L22: 0.2060 REMARK 3 L33: 0.6973 L12: -0.1278 REMARK 3 L13: -0.2000 L23: 0.0041 REMARK 3 S TENSOR REMARK 3 S11: -0.0301 S12: -0.1174 S13: -0.1075 REMARK 3 S21: -0.0512 S22: -0.1276 S23: 0.0567 REMARK 3 S31: 0.4986 S32: 0.0835 S33: 0.1259 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4FUT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073382. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : BENDING MAGNET REMARK 200 OPTICS : ROSENBAUM-ROCK DOUBLE-CRYSTAL REMARK 200 MONOCHROMATOR: WATER COOLED; REMARK 200 SAGITALLY FOCUSING 2ND CRYSTAL, REMARK 200 ROSENBAUM-ROCK VERTICAL FOCUSING REMARK 200 MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.30 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : 0.05900 REMARK 200 FOR THE DATA SET : 47.8670 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.80 REMARK 200 R MERGE FOR SHELL (I) : 0.45400 REMARK 200 R SYM FOR SHELL (I) : 0.44200 REMARK 200 FOR SHELL : 7.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: APO-RPMATB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: (BIS-TRIS BUFFER (100 MM, PH 6.5) REMARK 280 CONTAINING TRIMETHYLAMMONIUM CHLORIDE (25 MM), POLYETHYLENE REMARK 280 GLYCOL 8000 (19.5 %, W/V), GLYCEROL (5 %, W/V), VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 15.91300 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.82600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 23.86950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 39.78250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 7.95650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 388 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 277 -18.85 85.75 REMARK 500 ASN A 306 -147.30 50.85 REMARK 500 GLU A 337 -76.70 -77.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 607 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 608 O3G REMARK 620 2 ATP A 608 O1B 84.1 REMARK 620 3 HOH A 775 O 92.9 84.8 REMARK 620 4 HOH A 802 O 88.8 89.2 173.5 REMARK 620 5 HOH A1064 O 96.6 174.6 89.8 96.2 REMARK 620 6 HOH A1065 O 164.6 81.5 91.0 85.8 98.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 608 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NYQ RELATED DB: PDB REMARK 900 STRUCTURE OF SCMATB WITH AMP AND METHYLMALONYL-COA BOUND REMARK 900 RELATED ID: 3NYR RELATED DB: PDB REMARK 900 STRUCTURE OF SCMATB WITH AMP AND MALONYL-COA BOUND DBREF 4FUT A 1 503 UNP Q6ND88 Q6ND88_RHOPA 1 503 SEQADV 4FUT ALA A 488 UNP Q6ND88 LYS 488 ENGINEERED MUTATION SEQRES 1 A 503 MET ASN ALA ASN LEU PHE ALA ARG LEU PHE ASP MLY LEU SEQRES 2 A 503 ASP ASP PRO HIS MLY LEU ALA ILE GLU THR ALA ALA GLY SEQRES 3 A 503 ASP MLY ILE SER TYR ALA GLU LEU VAL ALA ARG ALA GLY SEQRES 4 A 503 ARG VAL ALA ASN VAL LEU VAL ALA ARG GLY LEU GLN VAL SEQRES 5 A 503 GLY ASP ARG VAL ALA ALA GLN THR GLU MLY SER VAL GLU SEQRES 6 A 503 ALA LEU VAL LEU TYR LEU ALA THR VAL ARG ALA GLY GLY SEQRES 7 A 503 VAL TYR LEU PRO LEU ASN THR ALA TYR THR LEU HIS GLU SEQRES 8 A 503 LEU ASP TYR PHE ILE THR ASP ALA GLU PRO MLY ILE VAL SEQRES 9 A 503 VAL CYS ASP PRO SER MLY ARG ASP GLY ILE ALA ALA ILE SEQRES 10 A 503 ALA ALA MLY VAL GLY ALA THR VAL GLU THR LEU GLY PRO SEQRES 11 A 503 ASP GLY ARG GLY SER LEU THR ASP ALA ALA ALA GLY ALA SEQRES 12 A 503 SER GLU ALA PHE ALA THR ILE ASP ARG GLY ALA ASP ASP SEQRES 13 A 503 LEU ALA ALA ILE LEU TYR THR SER GLY THR THR GLY ARG SEQRES 14 A 503 SER MLY GLY ALA MET LEU SER HIS ASP ASN LEU ALA SER SEQRES 15 A 503 ASN SER LEU THR LEU VAL ASP TYR TRP ARG PHE THR PRO SEQRES 16 A 503 ASP ASP VAL LEU ILE HIS ALA LEU PRO ILE TYR HIS THR SEQRES 17 A 503 HIS GLY LEU PHE VAL ALA SER ASN VAL THR LEU PHE ALA SEQRES 18 A 503 ARG GLY SER MET ILE PHE LEU PRO MLY PHE ASP PRO ASP SEQRES 19 A 503 MLY ILE LEU ASP LEU MET ALA ARG ALA THR VAL LEU MET SEQRES 20 A 503 GLY VAL PRO THR PHE TYR THR ARG LEU LEU GLN SER PRO SEQRES 21 A 503 ARG LEU THR MLY GLU THR THR GLY HIS MET ARG LEU PHE SEQRES 22 A 503 ILE SER GLY SER ALA PRO LEU LEU ALA ASP THR HIS ARG SEQRES 23 A 503 GLU TRP SER ALA MLY THR GLY HIS ALA VAL LEU GLU ARG SEQRES 24 A 503 TYR GLY MET THR GLU THR ASN MET ASN THR SER ASN PRO SEQRES 25 A 503 TYR ASP GLY ASP ARG VAL PRO GLY ALA VAL GLY PRO ALA SEQRES 26 A 503 LEU PRO GLY VAL SER ALA ARG VAL THR ASP PRO GLU THR SEQRES 27 A 503 GLY MLY GLU LEU PRO ARG GLY ASP ILE GLY MET ILE GLU SEQRES 28 A 503 VAL MLY GLY PRO ASN VAL PHE MLY GLY TYR TRP ARG MET SEQRES 29 A 503 PRO GLU MLY THR MLY SER GLU PHE ARG ASP ASP GLY PHE SEQRES 30 A 503 PHE ILE THR GLY ASP LEU GLY MLY ILE ASP GLU ARG GLY SEQRES 31 A 503 TYR VAL HIS ILE LEU GLY ARG GLY MLY ASP LEU VAL ILE SEQRES 32 A 503 THR GLY GLY PHE ASN VAL TYR PRO MLY GLU ILE GLU SER SEQRES 33 A 503 GLU ILE ASP ALA MET PRO GLY VAL VAL GLU SER ALA VAL SEQRES 34 A 503 ILE GLY VAL PRO HIS ALA ASP PHE GLY GLU GLY VAL THR SEQRES 35 A 503 ALA VAL VAL VAL ARG ASP MLY GLY ALA THR ILE ASP GLU SEQRES 36 A 503 ALA GLN VAL LEU HIS GLY LEU ASP GLY GLN LEU ALA MLY SEQRES 37 A 503 PHE MLY MET PRO MLY MLY VAL ILE PHE VAL ASP ASP LEU SEQRES 38 A 503 PRO ARG ASN THR MET GLY ALA VAL GLN MLY ASN VAL LEU SEQRES 39 A 503 ARG GLU THR TYR MLY ASP ILE TYR MLY MODRES 4FUT MLY A 12 LYS N-DIMETHYL-LYSINE MODRES 4FUT MLY A 18 LYS N-DIMETHYL-LYSINE MODRES 4FUT MLY A 28 LYS N-DIMETHYL-LYSINE MODRES 4FUT MLY A 62 LYS N-DIMETHYL-LYSINE MODRES 4FUT MLY A 102 LYS N-DIMETHYL-LYSINE MODRES 4FUT MLY A 110 LYS N-DIMETHYL-LYSINE MODRES 4FUT MLY A 120 LYS N-DIMETHYL-LYSINE MODRES 4FUT MLY A 171 LYS N-DIMETHYL-LYSINE MODRES 4FUT MLY A 230 LYS N-DIMETHYL-LYSINE MODRES 4FUT MLY A 235 LYS N-DIMETHYL-LYSINE MODRES 4FUT MLY A 264 LYS N-DIMETHYL-LYSINE MODRES 4FUT MLY A 291 LYS N-DIMETHYL-LYSINE MODRES 4FUT MLY A 340 LYS N-DIMETHYL-LYSINE MODRES 4FUT MLY A 353 LYS N-DIMETHYL-LYSINE MODRES 4FUT MLY A 359 LYS N-DIMETHYL-LYSINE MODRES 4FUT MLY A 367 LYS N-DIMETHYL-LYSINE MODRES 4FUT MLY A 369 LYS N-DIMETHYL-LYSINE MODRES 4FUT MLY A 385 LYS N-DIMETHYL-LYSINE MODRES 4FUT MLY A 399 LYS N-DIMETHYL-LYSINE MODRES 4FUT MLY A 412 LYS N-DIMETHYL-LYSINE MODRES 4FUT MLY A 449 LYS N-DIMETHYL-LYSINE MODRES 4FUT MLY A 468 LYS N-DIMETHYL-LYSINE MODRES 4FUT MLY A 470 LYS N-DIMETHYL-LYSINE MODRES 4FUT MLY A 473 LYS N-DIMETHYL-LYSINE MODRES 4FUT MLY A 474 LYS N-DIMETHYL-LYSINE MODRES 4FUT MLY A 491 LYS N-DIMETHYL-LYSINE MODRES 4FUT MLY A 499 LYS N-DIMETHYL-LYSINE MODRES 4FUT MLY A 503 LYS N-DIMETHYL-LYSINE HET MLY A 12 11 HET MLY A 18 11 HET MLY A 28 11 HET MLY A 62 11 HET MLY A 102 11 HET MLY A 110 11 HET MLY A 120 11 HET MLY A 171 11 HET MLY A 230 11 HET MLY A 235 11 HET MLY A 264 11 HET MLY A 291 11 HET MLY A 340 11 HET MLY A 353 11 HET MLY A 359 11 HET MLY A 367 11 HET MLY A 369 11 HET MLY A 385 11 HET MLY A 399 11 HET MLY A 412 11 HET MLY A 449 11 HET MLY A 468 11 HET MLY A 470 11 HET MLY A 473 11 HET MLY A 474 11 HET MLY A 491 11 HET MLY A 499 11 HET MLY A 503 12 HET GOL A 601 6 HET GOL A 602 6 HET GOL A 603 6 HET GOL A 604 6 HET GOL A 605 6 HET GOL A 606 6 HET MG A 607 1 HET ATP A 608 31 HETNAM MLY N-DIMETHYL-LYSINE HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MLY 28(C8 H18 N2 O2) FORMUL 2 GOL 6(C3 H8 O3) FORMUL 8 MG MG 2+ FORMUL 9 ATP C10 H16 N5 O13 P3 FORMUL 10 HOH *609(H2 O) HELIX 1 1 ASN A 4 ASP A 11 1 8 HELIX 2 2 TYR A 31 ARG A 48 1 18 HELIX 3 3 SER A 63 ALA A 76 1 14 HELIX 4 4 THR A 88 GLU A 100 1 13 HELIX 5 5 MLY A 110 MLY A 120 1 11 HELIX 6 6 GLY A 134 ALA A 143 1 10 HELIX 7 7 HIS A 177 TRP A 191 1 15 HELIX 8 8 HIS A 207 PHE A 212 1 6 HELIX 9 9 PHE A 212 ARG A 222 1 11 HELIX 10 10 ASP A 232 ALA A 241 1 10 HELIX 11 11 VAL A 249 LEU A 257 1 9 HELIX 12 12 THR A 263 GLY A 268 1 6 HELIX 13 13 LEU A 281 GLY A 293 1 13 HELIX 14 14 MET A 364 GLU A 371 1 8 HELIX 15 15 MLY A 399 LEU A 401 5 3 HELIX 16 16 TYR A 410 ALA A 420 1 11 HELIX 17 17 ASP A 454 GLY A 464 1 11 HELIX 18 18 ALA A 467 MET A 471 5 5 HELIX 19 19 GLN A 490 TYR A 498 1 9 SHEET 1 A 8 MLY A 28 SER A 30 0 SHEET 2 A 8 LEU A 19 GLU A 22 -1 N ALA A 20 O ILE A 29 SHEET 3 A 8 SER A 224 PHE A 227 1 O PHE A 227 N GLU A 22 SHEET 4 A 8 VAL A 198 HIS A 201 1 N HIS A 201 O ILE A 226 SHEET 5 A 8 VAL A 245 GLY A 248 1 O VAL A 245 N ILE A 200 SHEET 6 A 8 LEU A 272 SER A 275 1 O ILE A 274 N LEU A 246 SHEET 7 A 8 LEU A 297 MET A 302 1 O LEU A 297 N PHE A 273 SHEET 8 A 8 ASN A 306 SER A 310 -1 O ASN A 308 N TYR A 300 SHEET 1 B 4 VAL A 79 PRO A 82 0 SHEET 2 B 4 ARG A 55 GLN A 59 1 N VAL A 56 O LEU A 81 SHEET 3 B 4 ILE A 103 CYS A 106 1 O VAL A 105 N ALA A 57 SHEET 4 B 4 THR A 124 THR A 127 1 O THR A 124 N VAL A 104 SHEET 1 C 2 LEU A 157 TYR A 162 0 SHEET 2 C 2 GLY A 172 SER A 176 -1 O LEU A 175 N ALA A 158 SHEET 1 D 4 SER A 330 THR A 334 0 SHEET 2 D 4 GLY A 348 MLY A 353 -1 O MLY A 353 N SER A 330 SHEET 3 D 4 PHE A 378 ILE A 386 -1 O PHE A 378 N VAL A 352 SHEET 4 D 4 VAL A 392 ARG A 397 -1 O GLY A 396 N LEU A 383 SHEET 1 E 2 VAL A 402 THR A 404 0 SHEET 2 E 2 PHE A 407 VAL A 409 -1 O VAL A 409 N VAL A 402 SHEET 1 F 3 VAL A 424 HIS A 434 0 SHEET 2 F 3 GLY A 438 ARG A 447 -1 O GLY A 440 N VAL A 432 SHEET 3 F 3 MLY A 474 PHE A 477 1 O ILE A 476 N ALA A 443 LINK C ASP A 11 N MLY A 12 1555 1555 1.33 LINK C MLY A 12 N LEU A 13 1555 1555 1.33 LINK C HIS A 17 N MLY A 18 1555 1555 1.32 LINK C MLY A 18 N LEU A 19 1555 1555 1.33 LINK C ASP A 27 N MLY A 28 1555 1555 1.33 LINK C MLY A 28 N ILE A 29 1555 1555 1.33 LINK C GLU A 61 N MLY A 62 1555 1555 1.32 LINK C MLY A 62 N SER A 63 1555 1555 1.33 LINK C PRO A 101 N MLY A 102 1555 1555 1.33 LINK C MLY A 102 N ILE A 103 1555 1555 1.33 LINK C SER A 109 N MLY A 110 1555 1555 1.33 LINK C MLY A 110 N ARG A 111 1555 1555 1.33 LINK C ALA A 119 N MLY A 120 1555 1555 1.33 LINK C MLY A 120 N VAL A 121 1555 1555 1.33 LINK C SER A 170 N MLY A 171 1555 1555 1.33 LINK C MLY A 171 N GLY A 172 1555 1555 1.33 LINK C PRO A 229 N MLY A 230 1555 1555 1.33 LINK C MLY A 230 N PHE A 231 1555 1555 1.33 LINK C ASP A 234 N MLY A 235 1555 1555 1.33 LINK C MLY A 235 N ILE A 236 1555 1555 1.33 LINK C THR A 263 N MLY A 264 1555 1555 1.33 LINK C MLY A 264 N GLU A 265 1555 1555 1.33 LINK C ALA A 290 N MLY A 291 1555 1555 1.33 LINK C MLY A 291 N THR A 292 1555 1555 1.33 LINK C GLY A 339 N MLY A 340 1555 1555 1.33 LINK C MLY A 340 N GLU A 341 1555 1555 1.33 LINK C VAL A 352 N MLY A 353 1555 1555 1.33 LINK C MLY A 353 N GLY A 354 1555 1555 1.33 LINK C PHE A 358 N MLY A 359 1555 1555 1.33 LINK C MLY A 359 N GLY A 360 1555 1555 1.33 LINK C GLU A 366 N MLY A 367 1555 1555 1.33 LINK C MLY A 367 N THR A 368 1555 1555 1.33 LINK C THR A 368 N MLY A 369 1555 1555 1.33 LINK C MLY A 369 N SER A 370 1555 1555 1.33 LINK C GLY A 384 N MLY A 385 1555 1555 1.33 LINK C MLY A 385 N ILE A 386 1555 1555 1.32 LINK C GLY A 398 N MLY A 399 1555 1555 1.33 LINK C MLY A 399 N ASP A 400 1555 1555 1.33 LINK C PRO A 411 N MLY A 412 1555 1555 1.33 LINK C MLY A 412 N GLU A 413 1555 1555 1.33 LINK C ASP A 448 N MLY A 449 1555 1555 1.33 LINK C MLY A 449 N GLY A 450 1555 1555 1.33 LINK C ALA A 467 N MLY A 468 1555 1555 1.33 LINK C MLY A 468 N PHE A 469 1555 1555 1.33 LINK C PHE A 469 N MLY A 470 1555 1555 1.33 LINK C MLY A 470 N MET A 471 1555 1555 1.33 LINK C PRO A 472 N MLY A 473 1555 1555 1.33 LINK C MLY A 473 N MLY A 474 1555 1555 1.33 LINK C MLY A 474 N VAL A 475 1555 1555 1.33 LINK C GLN A 490 N MLY A 491 1555 1555 1.33 LINK C MLY A 491 N ASN A 492 1555 1555 1.33 LINK C TYR A 498 N MLY A 499 1555 1555 1.33 LINK C MLY A 499 N ASP A 500 1555 1555 1.33 LINK C TYR A 502 N MLY A 503 1555 1555 1.33 LINK MG MG A 607 O3G ATP A 608 1555 1555 2.11 LINK MG MG A 607 O1B ATP A 608 1555 1555 2.16 LINK MG MG A 607 O HOH A 775 1555 1555 2.30 LINK MG MG A 607 O HOH A 802 1555 1555 2.34 LINK MG MG A 607 O HOH A1064 1555 1555 2.16 LINK MG MG A 607 O HOH A1065 1555 1555 2.25 SITE 1 AC1 3 ARG A 8 HOH A 937 HOH A1103 SITE 1 AC2 3 THR A 368 PHE A 372 HOH A1306 SITE 1 AC3 3 ALA A 282 ARG A 286 HOH A1192 SITE 1 AC4 8 ALA A 325 LEU A 326 GLY A 328 VAL A 329 SITE 2 AC4 8 HOH A 787 HOH A1018 HOH A1033 HOH A1299 SITE 1 AC5 5 PRO A 204 THR A 251 ARG A 255 THR A 485 SITE 2 AC5 5 GLY A 487 SITE 1 AC6 2 VAL A 52 ARG A 152 SITE 1 AC7 5 ATP A 608 HOH A 775 HOH A 802 HOH A1064 SITE 2 AC7 5 HOH A1065 SITE 1 AC8 29 THR A 163 SER A 164 GLY A 165 THR A 166 SITE 2 AC8 29 THR A 167 HIS A 207 SER A 277 ALA A 278 SITE 3 AC8 29 PRO A 279 GLU A 298 ARG A 299 GLY A 301 SITE 4 AC8 29 MET A 302 THR A 303 VAL A 322 ASP A 382 SITE 5 AC8 29 ILE A 394 ARG A 397 MG A 607 HOH A 713 SITE 6 AC8 29 HOH A 735 HOH A 775 HOH A 802 HOH A 882 SITE 7 AC8 29 HOH A 886 HOH A1065 HOH A1067 HOH A1168 SITE 8 AC8 29 HOH A1242 CRYST1 173.140 173.140 47.739 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005776 0.003335 0.000000 0.00000 SCALE2 0.000000 0.006669 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020947 0.00000