HEADER HYDROLASE 28-JUN-12 4FUU TITLE CRYSTAL STRUCTURE OF A LEUCINE AMINOPEPTIDASE PRECURSOR (BT_2548) FROM TITLE 2 BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.30 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUCINE AMINOPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 24-331; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 STRAIN: ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482; SOURCE 5 GENE: BT_2548; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PHOSPHORYLASE/HYDROLASE LIKE FOLD, PEPTIDASE FAMILY M28, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-BIOLOGY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 3 01-FEB-23 4FUU 1 REMARK SEQADV LINK REVDAT 2 15-NOV-17 4FUU 1 REMARK REVDAT 1 31-OCT-12 4FUU 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A LEUCINE AMINOPEPTIDASE PRECURSOR JRNL TITL 2 (BT_2548) FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.30 JRNL TITL 3 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 64273 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.120 REMARK 3 R VALUE (WORKING SET) : 0.118 REMARK 3 FREE R VALUE : 0.157 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3265 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4377 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 244 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2259 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 329 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.17000 REMARK 3 B22 (A**2) : -0.06000 REMARK 3 B33 (A**2) : -0.22000 REMARK 3 B12 (A**2) : -0.14000 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : 0.60000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.043 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.045 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.028 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.485 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.983 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.972 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2440 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1621 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3342 ; 1.356 ; 1.938 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3970 ; 0.898 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 323 ; 5.811 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 121 ;37.544 ;24.793 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 388 ;11.458 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;21.435 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 361 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2798 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 499 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1492 ; 2.485 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 608 ; 1.282 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2412 ; 3.525 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 948 ; 4.760 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 912 ; 6.630 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4061 ; 1.709 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 335 ;12.521 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3989 ; 5.551 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 4.PHOSPHATE (PO4) FROM THE CRYSTALLIZATION BUFFER REMARK 3 AND 1,2-ETHANEDIOL (EDO) USED AS A CRYOPROTECTANT WERE MODELED REMARK 3 INTO THE STRUCTURE. 5. THE MODELING OF ZINC IS SUPPORTED BY X- REMARK 3 RAY FLUORESCENCE SCANS. THE OCCUPANCY OF THE ZN ATOM WAS REDUCED REMARK 3 TO 0.5 FOR ITS REDUCED SCATTERING INDICATED BY ELECTRON DENSITY REMARK 3 MAPS. 6. AN UNKNOWN LIGAND (UNL) WAS MODELED AT THE PUTATIVE REMARK 3 ACTIVE SITE. REMARK 4 REMARK 4 4FUU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073383. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537,0.9796,0.9793 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : KOHZU: DOUBLE CRYSTAL SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64313 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 27.993 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05500 REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.3 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.43500 REMARK 200 R SYM FOR SHELL (I) : 0.43500 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20.00% POLYETHYLENE GLYCOL 3350, REMARK 280 0.200M AMMONIUM DIHYDROGEN PHOSPHATE, NANODROP, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: PACKING ANALYSIS SUGGEST THE ASSIGNMENT OF A MONOMER AS THE REMARK 300 SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLY A 24 REMARK 465 GLY A 25 REMARK 465 LYS A 26 REMARK 465 ALA A 27 REMARK 465 THR A 28 REMARK 465 GLY A 29 REMARK 465 THR A 30 REMARK 465 ASN A 31 REMARK 465 GLU A 32 REMARK 465 GLN A 33 REMARK 465 SER A 34 REMARK 465 GLU A 35 REMARK 465 LYS A 36 REMARK 465 VAL A 37 REMARK 465 ASP A 292 REMARK 465 PRO A 293 REMARK 465 GLU A 294 REMARK 465 THR A 295 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 38 CG1 CG2 REMARK 470 GLU A 114 CD OE1 OE2 REMARK 470 LYS A 116 CD CE NZ REMARK 470 LYS A 117 CD CE NZ REMARK 470 GLU A 137 CG CD OE1 OE2 REMARK 470 LYS A 138 CG CD CE NZ REMARK 470 GLU A 190 CG CD OE1 OE2 REMARK 470 LYS A 192 CG CD CE NZ REMARK 470 LYS A 194 CG CD CE NZ REMARK 470 GLU A 196 CG CD OE1 OE2 REMARK 470 ASP A 244 CG OD1 OD2 REMARK 470 LYS A 247 CE NZ REMARK 470 LYS A 254 CE NZ REMARK 470 LYS A 284 CE NZ REMARK 470 LYS A 331 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MSE A 224 66.53 62.69 REMARK 500 ALA A 242 49.69 -143.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 149 OD2 REMARK 620 2 ASP A 182 OD2 93.1 REMARK 620 3 HIS A 302 NE2 109.5 110.9 REMARK 620 4 UNL A 401 O2 105.0 114.7 119.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-417178 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT (RESIDUES 24-331) WAS EXPRESSED WITH AN N-TERMINAL REMARK 999 PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV REMARK 999 PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 4FUU A 24 331 UNP Q8A4P9 Q8A4P9_BACTN 24 331 SEQADV 4FUU GLY A 0 UNP Q8A4P9 EXPRESSION TAG SEQRES 1 A 309 GLY GLY GLY LYS ALA THR GLY THR ASN GLU GLN SER GLU SEQRES 2 A 309 LYS VAL VAL VAL ASN VAL PRO GLN PHE ASP ALA ASP SER SEQRES 3 A 309 ALA TYR LEU TYR VAL LYS ASN GLN VAL ASP PHE GLY PRO SEQRES 4 A 309 ARG VAL PRO ASN THR LYS GLU HIS VAL ALA CYS GLY ASN SEQRES 5 A 309 TYR LEU ALA GLY LYS LEU GLU ALA PHE GLY ALA LYS VAL SEQRES 6 A 309 THR ASN GLN TYR ALA ASP LEU ILE ALA TYR ASP GLY THR SEQRES 7 A 309 LEU LEU LYS ALA ARG ASN ILE ILE GLY SER TYR LYS PRO SEQRES 8 A 309 GLU SER LYS LYS ARG ILE ALA LEU PHE ALA HIS TRP ASP SEQRES 9 A 309 THR ARG PRO TRP ALA ASP ASN ASP ALA ASP GLU LYS ASN SEQRES 10 A 309 HIS HIS THR PRO ILE LEU GLY ALA ASN ASP GLY ALA SER SEQRES 11 A 309 GLY VAL GLY ALA LEU LEU GLU ILE ALA ARG LEU VAL ASN SEQRES 12 A 309 GLN GLN GLN PRO GLU LEU GLY ILE ASP ILE ILE PHE LEU SEQRES 13 A 309 ASP ALA GLU ASP TYR GLY THR PRO GLN PHE TYR GLU GLY SEQRES 14 A 309 LYS HIS LYS GLU GLU ALA TRP CYS LEU GLY SER GLN TYR SEQRES 15 A 309 TRP SER ARG ASN PRO HIS VAL GLN GLY TYR ASN ALA ARG SEQRES 16 A 309 PHE GLY ILE LEU LEU ASP MSE VAL GLY GLY GLU ASN SER SEQRES 17 A 309 VAL PHE LEU LYS GLU GLY TYR SER GLU GLU PHE ALA PRO SEQRES 18 A 309 ASP ILE ASN LYS LYS VAL TRP LYS ALA ALA LYS LYS ALA SEQRES 19 A 309 GLY TYR GLY LYS THR PHE ILE ASP GLU ARG GLY ASP THR SEQRES 20 A 309 ILE THR ASP ASP HIS LEU PHE ILE ASN ARG LEU ALA ARG SEQRES 21 A 309 ILE LYS THR ILE ASP ILE ILE PRO ASN ASP PRO GLU THR SEQRES 22 A 309 GLY PHE PRO PRO THR TRP HIS THR ILE HIS ASP ASN MSE SEQRES 23 A 309 ASP HIS ILE ASP LYS ASN THR LEU LYS ALA VAL GLY GLN SEQRES 24 A 309 THR VAL LEU GLU VAL ILE TYR ASN GLU LYS MODRES 4FUU MSE A 224 MET SELENOMETHIONINE MODRES 4FUU MSE A 308 MET SELENOMETHIONINE HET MSE A 224 8 HET MSE A 308 8 HET UNL A 401 4 HET PO4 A 402 5 HET ZN A 403 1 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HETNAM MSE SELENOMETHIONINE HETNAM UNL UNKNOWN LIGAND HETNAM PO4 PHOSPHATE ION HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 3 PO4 O4 P 3- FORMUL 4 ZN ZN 2+ FORMUL 5 EDO 3(C2 H6 O2) FORMUL 8 HOH *329(H2 O) HELIX 1 1 ASP A 45 ASP A 58 1 14 HELIX 2 2 THR A 66 PHE A 83 1 18 HELIX 3 3 ASP A 136 HIS A 140 5 5 HELIX 4 4 GLY A 150 GLN A 167 1 18 HELIX 5 5 LYS A 194 TRP A 198 5 5 HELIX 6 6 CYS A 199 ASN A 208 1 10 HELIX 7 7 GLU A 235 ALA A 242 1 8 HELIX 8 8 ALA A 242 ALA A 256 1 15 HELIX 9 9 ASP A 272 ALA A 281 1 10 HELIX 10 10 ASN A 307 ILE A 311 5 5 HELIX 11 11 ASP A 312 GLU A 330 1 19 SHEET 1 A 6 LYS A 86 ILE A 95 0 SHEET 2 A 6 LEU A 101 TYR A 111 -1 O LEU A 102 N LEU A 94 SHEET 3 A 6 GLY A 172 LEU A 178 -1 O PHE A 177 N ILE A 107 SHEET 4 A 6 ARG A 118 HIS A 124 1 N LEU A 121 O ILE A 176 SHEET 5 A 6 PHE A 218 LEU A 222 1 O ILE A 220 N PHE A 122 SHEET 6 A 6 THR A 285 ILE A 288 1 O ILE A 286 N LEU A 221 SHEET 1 B 2 PHE A 232 LYS A 234 0 SHEET 2 B 2 PHE A 262 ARG A 266 1 O GLU A 265 N LYS A 234 LINK C ASP A 223 N MSE A 224 1555 1555 1.32 LINK C MSE A 224 N VAL A 225 1555 1555 1.33 LINK C ASN A 307 N MSE A 308 1555 1555 1.34 LINK C MSE A 308 N ASP A 309 1555 1555 1.33 LINK OD2 ASP A 149 ZN ZN A 403 1555 1555 1.91 LINK OD2 ASP A 182 ZN ZN A 403 1555 1555 2.16 LINK NE2 HIS A 302 ZN ZN A 403 1555 1555 1.95 LINK O2 UNL A 401 ZN ZN A 403 1555 1555 1.81 SITE 1 AC1 5 HIS A 305 ASN A 307 ASP A 309 HIS A 310 SITE 2 AC1 5 HOH A 655 SITE 1 AC2 3 ASP A 149 ASP A 182 HIS A 302 SITE 1 AC3 7 LEU A 233 ASP A 268 ILE A 270 ILE A 289 SITE 2 AC3 7 PRO A 290 ASN A 291 HOH A 693 SITE 1 AC4 6 GLY A 84 GLY A 236 GLU A 240 THR A 269 SITE 2 AC4 6 EDO A 406 HOH A 589 SITE 1 AC5 6 GLY A 84 ASN A 165 GLY A 236 GLU A 239 SITE 2 AC5 6 EDO A 405 HOH A 578 CRYST1 40.236 41.582 48.528 65.47 80.43 78.68 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024853 -0.004974 -0.002420 0.00000 SCALE2 0.000000 0.024526 -0.010567 0.00000 SCALE3 0.000000 0.000000 0.022755 0.00000