HEADER MEMBRANE PROTEIN 29-JUN-12 4FVF TITLE SPFH DOMAIN OF MOUSE STOMATIN (CRYSTAL FORM 1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: STOMATIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN 7.2B, ERYTHROCYTE BAND 7 INTEGRAL MEMBRANE PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: EPB7.2, EPB72, STOM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLAMSID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX6P1 KEYWDS MIXED ALPHA-BETA, SCAFFOLDING PROTEIN, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.BRAND,D.SCHWEFEL,O.DAUMKE REVDAT 4 13-SEP-23 4FVF 1 REMARK LINK REVDAT 3 25-APR-18 4FVF 1 REMARK REVDAT 2 31-OCT-12 4FVF 1 JRNL REVDAT 1 15-AUG-12 4FVF 0 JRNL AUTH J.BRAND,E.S.SMITH,D.SCHWEFEL,L.LAPATSINA,K.POOLE, JRNL AUTH 2 D.OMERBASIC,A.KOZLENKOV,J.BEHLKE,G.R.LEWIN,O.DAUMKE JRNL TITL A STOMATIN DIMER MODULATES THE ACTIVITY OF ACID-SENSING ION JRNL TITL 2 CHANNELS. JRNL REF EMBO J. V. 31 3635 2012 JRNL REFN ISSN 0261-4189 JRNL PMID 22850675 JRNL DOI 10.1038/EMBOJ.2012.203 REMARK 2 REMARK 2 RESOLUTION. 2.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0086 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 11753 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 597 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.46 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.53 REMARK 3 REFLECTION IN BIN (WORKING SET) : 808 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1800 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 77 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.96000 REMARK 3 B22 (A**2) : 0.96000 REMARK 3 B33 (A**2) : -1.44000 REMARK 3 B12 (A**2) : 0.48000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.369 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.271 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.197 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.083 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1830 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2491 ; 0.954 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 232 ; 5.186 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 81 ;38.601 ;25.556 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 333 ;15.538 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;14.846 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 315 ; 0.058 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1334 ; 0.002 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 88 A 202 REMARK 3 ORIGIN FOR THE GROUP (A): 17.5368 7.7893 18.5928 REMARK 3 T TENSOR REMARK 3 T11: 0.0606 T22: 0.1052 REMARK 3 T33: 0.0527 T12: 0.0146 REMARK 3 T13: 0.0401 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 5.6711 L22: 1.8161 REMARK 3 L33: 5.6227 L12: -0.1218 REMARK 3 L13: 4.5560 L23: -0.2697 REMARK 3 S TENSOR REMARK 3 S11: -0.1829 S12: 0.2540 S13: 0.0424 REMARK 3 S21: -0.0320 S22: 0.1179 S23: -0.1696 REMARK 3 S31: -0.2523 S32: -0.0532 S33: 0.0650 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 89 B 205 REMARK 3 ORIGIN FOR THE GROUP (A): 48.9671 -11.3004 16.6221 REMARK 3 T TENSOR REMARK 3 T11: 0.0603 T22: 0.0964 REMARK 3 T33: 0.0679 T12: 0.0121 REMARK 3 T13: -0.0095 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 5.5094 L22: 1.6793 REMARK 3 L33: 4.9149 L12: -0.7987 REMARK 3 L13: -4.2336 L23: 0.5007 REMARK 3 S TENSOR REMARK 3 S11: -0.2603 S12: 0.1253 S13: -0.1541 REMARK 3 S21: -0.0291 S22: 0.0462 S23: 0.2518 REMARK 3 S31: 0.3299 S32: 0.0080 S33: 0.2141 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4FVF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073404. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918410 REMARK 200 MONOCHROMATOR : SI 111 DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12351 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.460 REMARK 200 RESOLUTION RANGE LOW (A) : 57.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.6700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 1.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.70 REMARK 200 R MERGE FOR SHELL (I) : 1.85100 REMARK 200 R SYM FOR SHELL (I) : 0.62600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.120 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2RPB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 M SODIUM ACETATE, 0.05 M CADMIUM REMARK 280 SULFATE, 0.1 M HEPES , PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 228.96667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 114.48333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 171.72500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 57.24167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 286.20833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 228.96667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 114.48333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 57.24167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 171.72500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 286.20833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 86 REMARK 465 CYS A 87 REMARK 465 LEU A 203 REMARK 465 GLN A 204 REMARK 465 ARG A 205 REMARK 465 ALA A 206 REMARK 465 MET A 207 REMARK 465 ALA A 208 REMARK 465 ALA A 209 REMARK 465 GLU A 210 REMARK 465 ALA A 211 REMARK 465 GLU A 212 REMARK 465 ALA A 213 REMARK 465 PRO B 86 REMARK 465 CYS B 87 REMARK 465 THR B 88 REMARK 465 ALA B 206 REMARK 465 MET B 207 REMARK 465 ALA B 208 REMARK 465 ALA B 209 REMARK 465 GLU B 210 REMARK 465 ALA B 211 REMARK 465 GLU B 212 REMARK 465 ALA B 213 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 138 CG OD1 ND2 REMARK 470 ARG B 205 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP B 180 CD CD A 303 10655 2.17 REMARK 500 OD2 ASP B 166 CD CD A 309 10655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 195 -83.99 -93.93 REMARK 500 LYS B 195 -86.99 -87.68 REMARK 500 PRO B 200 98.85 -64.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 308 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 98 OG1 REMARK 620 2 ACT A 310 OXT 70.7 REMARK 620 3 HOH A 424 O 82.1 67.1 REMARK 620 4 HOH A 425 O 90.3 128.8 63.4 REMARK 620 5 HOH A 436 O 93.7 129.7 160.3 97.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 302 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 168 OE2 REMARK 620 2 GLU A 193 OE2 168.3 REMARK 620 3 HOH A 451 O 90.6 80.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 303 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 169 OE1 REMARK 620 2 HIS A 173 ND1 99.0 REMARK 620 3 HOH A 403 O 129.4 103.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 307 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 172 ND1 REMARK 620 2 HOH A 412 O 104.6 REMARK 620 3 HOH A 437 O 74.2 113.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 304 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 180 OD2 REMARK 620 2 ASP A 180 OD1 51.4 REMARK 620 3 HOH A 402 O 99.7 112.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 306 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 410 O REMARK 620 2 HOH A 411 O 76.8 REMARK 620 3 HOH A 446 O 91.3 122.7 REMARK 620 4 HOH A 452 O 93.4 66.6 170.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 301 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 168 OE2 REMARK 620 2 GLU B 193 OE2 160.5 REMARK 620 3 HOH B 406 O 95.0 103.8 REMARK 620 4 HOH B 423 O 81.1 79.6 172.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 302 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 179 OD2 REMARK 620 2 ASP B 183 OD2 103.6 REMARK 620 3 ASP B 183 OD1 108.3 50.2 REMARK 620 4 HOH B 418 O 120.7 113.9 69.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 303 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 180 O REMARK 620 2 HOH B 409 O 88.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FVJ RELATED DB: PDB REMARK 900 RELATED ID: 4FVG RELATED DB: PDB REMARK 900 L91A, I92A MUTANT OF STOMATIN DBREF 4FVF A 86 213 UNP P54116 STOM_MOUSE 86 213 DBREF 4FVF B 86 213 UNP P54116 STOM_MOUSE 86 213 SEQRES 1 A 128 PRO CYS THR ASP SER LEU ILE LYS VAL ASP MET ARG THR SEQRES 2 A 128 ILE SER PHE ASP ILE PRO PRO GLN GLU VAL LEU THR LYS SEQRES 3 A 128 ASP SER VAL THR ILE SER VAL ASP GLY VAL VAL TYR TYR SEQRES 4 A 128 ARG VAL GLN ASN ALA THR LEU ALA VAL ALA ASN ILE THR SEQRES 5 A 128 ASN ALA ASP SER ALA THR ARG LEU LEU ALA GLN THR THR SEQRES 6 A 128 LEU ARG ASN ALA LEU GLY THR LYS ASN LEU SER GLN ILE SEQRES 7 A 128 LEU SER ASP ARG GLU GLU ILE ALA HIS HIS MET GLN SER SEQRES 8 A 128 THR LEU ASP ASP ALA THR ASP ASP TRP GLY ILE LYS VAL SEQRES 9 A 128 GLU ARG VAL GLU ILE LYS ASP VAL LYS LEU PRO VAL GLN SEQRES 10 A 128 LEU GLN ARG ALA MET ALA ALA GLU ALA GLU ALA SEQRES 1 B 128 PRO CYS THR ASP SER LEU ILE LYS VAL ASP MET ARG THR SEQRES 2 B 128 ILE SER PHE ASP ILE PRO PRO GLN GLU VAL LEU THR LYS SEQRES 3 B 128 ASP SER VAL THR ILE SER VAL ASP GLY VAL VAL TYR TYR SEQRES 4 B 128 ARG VAL GLN ASN ALA THR LEU ALA VAL ALA ASN ILE THR SEQRES 5 B 128 ASN ALA ASP SER ALA THR ARG LEU LEU ALA GLN THR THR SEQRES 6 B 128 LEU ARG ASN ALA LEU GLY THR LYS ASN LEU SER GLN ILE SEQRES 7 B 128 LEU SER ASP ARG GLU GLU ILE ALA HIS HIS MET GLN SER SEQRES 8 B 128 THR LEU ASP ASP ALA THR ASP ASP TRP GLY ILE LYS VAL SEQRES 9 B 128 GLU ARG VAL GLU ILE LYS ASP VAL LYS LEU PRO VAL GLN SEQRES 10 B 128 LEU GLN ARG ALA MET ALA ALA GLU ALA GLU ALA HET CD A 301 1 HET CD A 302 1 HET CD A 303 1 HET CD A 304 1 HET CD A 305 1 HET CD A 306 1 HET CD A 307 1 HET CD A 308 1 HET CD A 309 1 HET ACT A 310 4 HET CD B 301 1 HET CD B 302 1 HET CD B 303 1 HET CD B 304 1 HETNAM CD CADMIUM ION HETNAM ACT ACETATE ION FORMUL 3 CD 13(CD 2+) FORMUL 12 ACT C2 H3 O2 1- FORMUL 17 HOH *77(H2 O) HELIX 1 1 ASN A 128 ASN A 135 1 8 HELIX 2 2 ASN A 135 THR A 157 1 23 HELIX 3 3 ASN A 159 ASP A 166 1 8 HELIX 4 4 ASP A 166 ASP A 183 1 18 HELIX 5 5 ASN B 128 ASN B 135 1 8 HELIX 6 6 ASN B 135 THR B 157 1 23 HELIX 7 7 ASN B 159 ASP B 166 1 8 HELIX 8 8 ASP B 166 ASP B 183 1 18 HELIX 9 9 GLN B 202 GLN B 204 5 3 SHEET 1 A 6 ILE A 99 LEU A 109 0 SHEET 2 A 6 THR A 115 VAL A 126 -1 O TYR A 124 N ILE A 99 SHEET 3 A 6 ILE A 187 LYS A 198 -1 O ARG A 191 N TYR A 123 SHEET 4 A 6 ILE B 187 PRO B 200 -1 O LEU B 199 N VAL A 197 SHEET 5 A 6 THR B 115 VAL B 126 -1 N TYR B 123 O ARG B 191 SHEET 6 A 6 ILE B 99 LEU B 109 -1 N ILE B 99 O TYR B 124 LINK OG1 THR A 98 CD CD A 308 1555 1555 2.42 LINK OD1 ASP A 166 CD CD A 301 1555 1555 2.69 LINK OE2 GLU A 168 CD CD A 302 1555 1555 2.49 LINK OE1 GLU A 169 CD CD A 303 1555 1555 2.30 LINK ND1 HIS A 172 CD CD A 307 1555 1555 2.69 LINK ND1 HIS A 173 CD CD A 303 1555 1555 2.47 LINK OD2 ASP A 180 CD CD A 304 1555 1555 2.34 LINK OD1 ASP A 180 CD CD A 304 1555 1555 2.68 LINK OE2 GLU A 193 CD CD A 302 1555 1555 2.44 LINK CD CD A 302 O HOH A 451 1555 1555 2.31 LINK CD CD A 303 O HOH A 403 1555 1555 2.51 LINK CD CD A 304 O HOH A 402 1555 1555 2.39 LINK CD CD A 306 O HOH A 410 1555 1555 2.43 LINK CD CD A 306 O HOH A 411 1555 1555 2.68 LINK CD CD A 306 O HOH A 446 1555 1555 2.34 LINK CD CD A 306 O HOH A 452 1555 1555 2.64 LINK CD CD A 307 O HOH A 412 1555 1555 2.60 LINK CD CD A 307 O HOH A 437 1555 1555 2.69 LINK CD CD A 308 OXT ACT A 310 1555 1555 2.18 LINK CD CD A 308 O HOH A 424 1555 1555 2.51 LINK CD CD A 308 O HOH A 425 1555 1555 2.65 LINK CD CD A 308 O HOH A 436 1555 1555 2.53 LINK OD2 ASP B 119 CD CD B 304 1555 1555 2.35 LINK OE2 GLU B 168 CD CD B 301 1555 1555 2.16 LINK OD2 ASP B 179 CD CD B 302 1555 1555 2.59 LINK O ASP B 180 CD CD B 303 1555 1555 2.60 LINK OD2AASP B 183 CD CD B 302 1555 1555 2.46 LINK OD1AASP B 183 CD CD B 302 1555 1555 2.70 LINK OE2 GLU B 193 CD CD B 301 1555 1555 2.52 LINK CD CD B 301 O HOH B 406 1555 1555 2.62 LINK CD CD B 301 O HOH B 423 1555 1555 2.53 LINK CD CD B 302 O HOH B 418 1555 1555 2.28 LINK CD CD B 303 O HOH B 409 1555 1555 2.36 SITE 1 AC1 1 ASP A 166 SITE 1 AC2 3 GLU A 168 GLU A 193 HOH A 451 SITE 1 AC3 4 GLU A 169 HIS A 173 HOH A 403 ASP B 180 SITE 1 AC4 4 ASP A 180 HOH A 402 GLU B 169 HIS B 173 SITE 1 AC5 4 ASP A 179 ASP A 183 HOH A 447 HOH B 424 SITE 1 AC6 6 HIS A 172 HOH A 410 HOH A 411 HOH A 446 SITE 2 AC6 6 HOH A 452 HIS B 172 SITE 1 AC7 4 HIS A 172 HOH A 412 HOH A 437 HIS B 172 SITE 1 AC8 6 THR A 98 ACT A 310 HOH A 424 HOH A 425 SITE 2 AC8 6 HOH A 436 THR B 98 SITE 1 AC9 2 ASP B 166 HOH B 424 SITE 1 BC1 9 MET A 96 ARG A 97 THR A 98 ARG A 125 SITE 2 BC1 9 GLU A 190 CD A 308 HOH A 424 THR B 98 SITE 3 BC1 9 HOH B 404 SITE 1 BC2 4 GLU B 168 GLU B 193 HOH B 406 HOH B 423 SITE 1 BC3 3 ASP B 179 ASP B 183 HOH B 418 SITE 1 BC4 5 ASP B 180 ASP B 183 ASP B 184 HOH B 409 SITE 2 BC4 5 HOH B 419 SITE 1 BC5 2 ASP B 119 ASP B 196 CRYST1 55.500 55.500 343.450 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018018 0.010403 0.000000 0.00000 SCALE2 0.000000 0.020805 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002912 0.00000